Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G20320 AT2G20320 |
| fragaria_vesca | FvH4_2g20280 |
| malus_domestica | MD05G1186700.v1.1 MD10G1174800.v1.1 |
| prunus_persica | Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 |
| pyrus_communis | pycom05g17090 pycom10g15050 |
| rosa_chinensis | RchiOBHm_Chr6g0286081 |
| rosa_laevigata | RLG00000012584 |
| rosa_multiflora | Rmu_sc0023663.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00182470 |
| rosa_rugosa | Rorug06G0178800 |
| rosa_samantha | Rh3BG272300 Rh6AG291200 Rh6BG294500 Rh6CG294100 Rh6DG286100 |
| rosa_wichuraiana | Rw6G025090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 395 |
| AccB1I | GGYRCC | 1 cut(s) | 151 |
| AccI | GTMKAC | 1 cut(s) | 2427 |
| AccIII | TCCGGA | 1 cut(s) | 1225 |
| AciI | CCGC | 4 cut(s) | 143, 166, 401, 1856 |
| AclWI | GGATC | 3 cut(s) | 1061, 2069, 2109 |
| AcoI | YGGCCR | 1 cut(s) | 1339 |
| AcsI | RAATTY | 1 cut(s) | 283 |
| AcuI | CTGAAG | 2 cut(s) | 60, 1293 |
| AdeI | CACNNNGTG | 1 cut(s) | 665 |
| AfaI | GTAC | 3 cut(s) | 552, 1242, 2334 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 862, 1015, 1631, 1900, 1901 |
| AflIII | ACRYGT | 1 cut(s) | 775 |
| AgeI | ACCGGT | 1 cut(s) | 2403 |
| AjnI | CCWGG | 3 cut(s) | 568, 619, 1984 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1424, 1456 |
| AleI | CACNNNNGTG | 1 cut(s) | 877 |
| Alw26I | GTCTC | 4 cut(s) | 461, 1055, 1151, 2193 |
| AlwI | GGATC | 3 cut(s) | 1061, 2069, 2109 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2078, 2252 |
| Aor13HI | TCCGGA | 1 cut(s) | 1225 |
| AoxI | GGCC | 3 cut(s) | 168, 797, 1339 |
| ApaI | GGGCCC | 1 cut(s) | 172 |
| ApeKI | GCWGC | 8 cut(s) | 82, 440, 511, 1133, 1700, 1766, 2252, 2255 |
| ApoI | RAATTY | 1 cut(s) | 283 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1304, 1336 |
| AseI | ATTAAT | 1 cut(s) | 641 |
| AsiGI | ACCGGT | 1 cut(s) | 2403 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 789, 1270, 1489, 2388 |
| AspLEI | GCGC | 4 cut(s) | 204, 957, 1783, 2170 |
| AspS9I | GGNCC | 5 cut(s) | 168, 169, 258, 521, 2401 |
| AsuC2I | CCSGG | 3 cut(s) | 156, 1199, 2351 |
| AsuHPI | GGTGA | 2 cut(s) | 816, 2119 |
| AsuNHI | GCTAGC | 1 cut(s) | 580 |
| AvaII | GGWCC | 3 cut(s) | 258, 521, 2401 |
| AxyI | CCTNAGG | 3 cut(s) | 294, 546, 1746 |
| BaeGI | GKGCMC | 2 cut(s) | 172, 1895 |
| BalI | TGGCCA | 1 cut(s) | 1341 |
| BanI | GGYRCC | 1 cut(s) | 151 |
| BanII | GRGCYC | 1 cut(s) | 172 |
| BauI | CACGAG | 1 cut(s) | 1350 |
| BbsI | GAAGAC | 1 cut(s) | 656 |
| BbvCI | CCTCAGC | 1 cut(s) | 435 |
| BbvI | GCAGC | 8 cut(s) | 94, 452, 523, 1120, 1687, 1753, 2239, 2267 |
| BccI | CCATC | 4 cut(s) | 246, 536, 664, 1253 |
| BciT130I | CCWGG | 3 cut(s) | 570, 621, 1986 |
| BcnI | CCSGG | 3 cut(s) | 156, 1199, 2351 |
| BcoDI | GTCTC | 4 cut(s) | 461, 1055, 1151, 2193 |
| BfaI | CTAG | 7 cut(s) | 192, 581, 1215, 1428, 1482, 1566, 2394 |
| BfmI | CTRYAG | 8 cut(s) | 509, 1134, 1589, 1667, 1809, 1917, 2049, 2253 |
| BfoI | RGCGCY | 2 cut(s) | 958, 1784 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 999 |
| BglII | AGATCT | 3 cut(s) | 2053, 2149, 2312 |
| BisI | GCNGC | 9 cut(s) | 83, 143, 441, 512, 1134, 1701, 1767, 2253, 2256 |
| BlsI | GCNGC | 9 cut(s) | 84, 144, 442, 513, 1135, 1702, 1768, 2254, 2257 |
| Bme1390I | CCNGG | 6 cut(s) | 156, 570, 621, 1199, 1986, 2351 |
| Bme18I | GGWCC | 3 cut(s) | 258, 521, 2401 |
| BmgT120I | GGNCC | 5 cut(s) | 168, 169, 258, 521, 2401 |
| BmiI | GGNNCC | 8 cut(s) | 153, 170, 259, 369, 523, 1188, 1224, 1297 |
| BmrFI | CCNGG | 6 cut(s) | 156, 570, 621, 1199, 1986, 2351 |
| BmrI | ACTGGG | 2 cut(s) | 1672, 2254 |
| BmsI | GCATC | 8 cut(s) | 13, 25, 225, 406, 825, 1744, 1999, 2224 |
| BmtI | GCTAGC | 1 cut(s) | 584 |
| BmuI | ACTGGG | 2 cut(s) | 1672, 2254 |
| BpiI | GAAGAC | 1 cut(s) | 656 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 108, 140 |
| BpmI | CTGGAG | 3 cut(s) | 642, 864, 1386 |
| Bpu10I | CCTNAGC | 1 cut(s) | 435 |
| BpuEI | CTTGAG | 3 cut(s) | 719, 1160, 2175 |
| BpuMI | CCSGG | 3 cut(s) | 156, 1199, 2351 |
| BsaBI | GATNNNNATC | 1 cut(s) | 420 |
| BsaJI | CCNNGG | 6 cut(s) | 155, 569, 875, 1197, 1705, 1985 |
| BsaWI | WCCGGW | 2 cut(s) | 1225, 2403 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 862, 1015, 1631, 1900, 1901 |
| Bse118I | RCCGGY | 1 cut(s) | 2403 |
| Bse1I | ACTGG | 6 cut(s) | 74, 319, 1678, 1872, 2015, 2260 |
| Bse21I | CCTNAGG | 3 cut(s) | 294, 546, 1746 |
| Bse3DI | GCAATG | 1 cut(s) | 591 |
| Bse8I | GATNNNNATC | 1 cut(s) | 420 |
| BseAI | TCCGGA | 1 cut(s) | 1225 |
| BseBI | CCWGG | 3 cut(s) | 570, 621, 1986 |
| BseDI | CCNNGG | 6 cut(s) | 155, 569, 875, 1197, 1705, 1985 |
| BseJI | GATNNNNATC | 1 cut(s) | 420 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 862, 1015, 1631, 1900, 1901 |
| BseMI | GCAATG | 1 cut(s) | 591 |
| BseNI | ACTGG | 6 cut(s) | 74, 319, 1678, 1872, 2015, 2260 |
| BseRI | GAGGAG | 3 cut(s) | 65, 110, 1790 |
| BseSI | GKGCMC | 2 cut(s) | 172, 1895 |
| BseXI | GCAGC | 8 cut(s) | 94, 452, 523, 1120, 1687, 1753, 2239, 2267 |
| BsgI | GTGCAG | 2 cut(s) | 855, 2261 |
| BshFI | GGCC | 3 cut(s) | 170, 799, 1341 |
| BshNI | GGYRCC | 1 cut(s) | 151 |
| BshTI | ACCGGT | 1 cut(s) | 2403 |
| BsiSI | CCGG | 5 cut(s) | 155, 1199, 1226, 2350, 2404 |
| BslFI | GGGAC | 3 cut(s) | 49, 271, 1180 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 862, 1015, 1631, 1900, 1901 |
| BsmAI | GTCTC | 4 cut(s) | 461, 1055, 1151, 2193 |
| BsmBI | CGTCTC | 1 cut(s) | 461 |
| BsmFI | GGGAC | 3 cut(s) | 49, 271, 1180 |
| BsmI | GAATGC | 1 cut(s) | 443 |
| BsnI | GGCC | 3 cut(s) | 170, 799, 1341 |
| Bsp120I | GGGCCC | 1 cut(s) | 168 |
| Bsp1286I | GDGCHC | 2 cut(s) | 172, 1895 |
| Bsp13I | TCCGGA | 1 cut(s) | 1225 |
| Bsp1407I | TGTACA | 1 cut(s) | 2332 |
| Bsp143I | GATC | 7 cut(s) | 1066, 1510, 2053, 2074, 2101, 2149, 2312 |
| BspACI | CCGC | 4 cut(s) | 143, 166, 401, 1856 |
| BspANI | GGCC | 3 cut(s) | 170, 799, 1341 |
| BspEI | TCCGGA | 1 cut(s) | 1225 |
| BspHI | TCATGA | 1 cut(s) | 2274 |
| BspLI | GGNNCC | 8 cut(s) | 153, 170, 259, 369, 523, 1188, 1224, 1297 |
| BspMAI | CTGCAG | 4 cut(s) | 513, 1138, 2053, 2257 |
| BspOI | GCTAGC | 1 cut(s) | 584 |
| BspPI | GGATC | 3 cut(s) | 1061, 2069, 2109 |
| BspT107I | GGYRCC | 1 cut(s) | 151 |
| BsrDI | GCAATG | 1 cut(s) | 591 |
| BsrFI | RCCGGY | 1 cut(s) | 2403 |
| BsrGI | TGTACA | 1 cut(s) | 2332 |
| BsrI | ACTGG | 6 cut(s) | 74, 319, 1678, 1872, 2015, 2260 |
| BssAI | RCCGGY | 1 cut(s) | 2403 |
| BssECI | CCNNGG | 6 cut(s) | 155, 569, 875, 1197, 1705, 1985 |
| BssMI | GATC | 7 cut(s) | 1066, 1510, 2053, 2074, 2101, 2149, 2312 |
| BssSI | CACGAG | 1 cut(s) | 1350 |
| BssT1I | CCWWGG | 1 cut(s) | 1705 |
| Bst2BI | CACGAG | 1 cut(s) | 1350 |
| Bst2UI | CCWGG | 3 cut(s) | 570, 621, 1986 |
| Bst4CI | ACNGT | 5 cut(s) | 887, 938, 1109, 1292, 1813 |
| Bst6I | CTCTTC | 4 cut(s) | 834, 857, 1429, 1626 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1853, 2252 |
| BstAUI | TGTACA | 1 cut(s) | 2332 |
| BstC8I | GCNNGC | 4 cut(s) | 168, 372, 582, 2244 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1629 |
| BstH2I | RGCGCY | 2 cut(s) | 958, 1784 |
| BstHHI | GCGC | 4 cut(s) | 204, 957, 1783, 2170 |
| BstKTI | GATC | 7 cut(s) | 1069, 1513, 2056, 2077, 2104, 2152, 2315 |
| BstMAI | GTCTC | 4 cut(s) | 461, 1055, 1151, 2193 |
| BstMBI | GATC | 7 cut(s) | 1066, 1510, 2053, 2074, 2101, 2149, 2312 |
| BstNI | CCWGG | 3 cut(s) | 570, 621, 1986 |
| BstNSI | RCATGY | 1 cut(s) | 779 |
| BstSCI | CCNGG | 6 cut(s) | 154, 568, 619, 1197, 1984, 2349 |
| BstSFI | CTRYAG | 8 cut(s) | 509, 1134, 1589, 1667, 1809, 1917, 2049, 2253 |
| BstSLI | GKGCMC | 2 cut(s) | 172, 1895 |
| BstV1I | GCAGC | 8 cut(s) | 94, 452, 523, 1120, 1687, 1753, 2239, 2267 |
| BstV2I | GAAGAC | 1 cut(s) | 656 |
| BstX2I | RGATCY | 5 cut(s) | 1066, 2053, 2074, 2149, 2312 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1956 |
| BstYI | RGATCY | 5 cut(s) | 1066, 2053, 2074, 2149, 2312 |
| Bsu36I | CCTNAGG | 3 cut(s) | 294, 546, 1746 |
| BsuRI | GGCC | 3 cut(s) | 170, 799, 1341 |
| BtgZI | GCGATG | 1 cut(s) | 1557 |
| BtsIMutI | CAGTG | 3 cut(s) | 326, 659, 1114 |
| Cac8I | GCNNGC | 4 cut(s) | 168, 372, 582, 2244 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2078, 2252 |
| CciI | TCATGA | 1 cut(s) | 2274 |
| CfoI | GCGC | 4 cut(s) | 204, 957, 1783, 2170 |
| Cfr10I | RCCGGY | 1 cut(s) | 2403 |
| Cfr13I | GGNCC | 5 cut(s) | 168, 169, 258, 521, 2401 |
| Csp6I | GTAC | 3 cut(s) | 551, 1241, 2333 |
| CspAI | ACCGGT | 1 cut(s) | 2403 |
| CviQI | GTAC | 3 cut(s) | 551, 1241, 2333 |
| DpnI | GATC | 7 cut(s) | 1068, 1512, 2055, 2076, 2103, 2151, 2314 |
| DpnII | GATC | 7 cut(s) | 1066, 1510, 2053, 2074, 2101, 2149, 2312 |
| DraI | TTTAAA | 1 cut(s) | 559 |
| DraIII | CACNNNGTG | 1 cut(s) | 665 |
| EaeI | YGGCCR | 1 cut(s) | 1339 |
| Eam1104I | CTCTTC | 4 cut(s) | 834, 857, 1429, 1626 |
| EarI | CTCTTC | 4 cut(s) | 834, 857, 1429, 1626 |
| Eco130I | CCWWGG | 1 cut(s) | 1705 |
| Eco147I | AGGCCT | 1 cut(s) | 799 |
| Eco24I | GRGCYC | 1 cut(s) | 172 |
| Eco47I | GGWCC | 3 cut(s) | 258, 521, 2401 |
| Eco57I | CTGAAG | 2 cut(s) | 60, 1293 |
| Eco81I | CCTNAGG | 3 cut(s) | 294, 546, 1746 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1629 |
| EcoO109I | RGGNCCY | 1 cut(s) | 521 |
| EcoRII | CCWGG | 3 cut(s) | 568, 619, 1984 |
| EcoT14I | CCWWGG | 1 cut(s) | 1705 |
| EcoT38I | GRGCYC | 1 cut(s) | 172 |
| ErhI | CCWWGG | 1 cut(s) | 1705 |
| Esp3I | CGTCTC | 1 cut(s) | 461 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1497, 1529 |
| FaqI | GGGAC | 3 cut(s) | 49, 271, 1180 |
| FauI | CCCGC | 3 cut(s) | 159, 394, 1849 |
| FauNDI | CATATG | 1 cut(s) | 138 |
| FblI | GTMKAC | 1 cut(s) | 2427 |
| Fnu4HI | GCNGC | 9 cut(s) | 83, 143, 441, 512, 1134, 1701, 1767, 2253, 2256 |
| FriOI | GRGCYC | 1 cut(s) | 172 |
| Fsp4HI | GCNGC | 9 cut(s) | 83, 143, 441, 512, 1134, 1701, 1767, 2253, 2256 |
| FspBI | CTAG | 7 cut(s) | 192, 581, 1215, 1428, 1482, 1566, 2394 |
| GlaI | GCGC | 4 cut(s) | 203, 956, 1782, 2169 |
| GluI | GCNGC | 9 cut(s) | 83, 143, 441, 512, 1134, 1701, 1767, 2253, 2256 |
| GsuI | CTGGAG | 3 cut(s) | 642, 864, 1386 |
| HaeII | RGCGCY | 2 cut(s) | 958, 1784 |
| HaeIII | GGCC | 3 cut(s) | 170, 799, 1341 |
| HapII | CCGG | 5 cut(s) | 155, 1199, 1226, 2350, 2404 |
| HhaI | GCGC | 4 cut(s) | 204, 957, 1783, 2170 |
| Hin6I | GCGC | 4 cut(s) | 202, 955, 1781, 2168 |
| HinP1I | GCGC | 4 cut(s) | 202, 955, 1781, 2168 |
| HindIII | AAGCTT | 2 cut(s) | 1486, 2470 |
| HpaII | CCGG | 5 cut(s) | 155, 1199, 1226, 2350, 2404 |
| HphI | GGTGA | 2 cut(s) | 816, 2119 |
| Hpy166II | GTNNAC | 4 cut(s) | 134, 1800, 2333, 2428 |
| Hpy8I | GTNNAC | 4 cut(s) | 134, 1800, 2333, 2428 |
| HpyAV | CCTTC | 6 cut(s) | 35, 235, 1020, 1407, 2032, 2189 |
| HpyCH4III | ACNGT | 5 cut(s) | 887, 938, 1109, 1292, 1813 |
| HspAI | GCGC | 4 cut(s) | 202, 955, 1781, 2168 |
| Kpn2I | TCCGGA | 1 cut(s) | 1225 |
| Kzo9I | GATC | 7 cut(s) | 1066, 1510, 2053, 2074, 2101, 2149, 2312 |
| LmnI | GCTCC | 5 cut(s) | 367, 694, 952, 1228, 1444 |
| Lsp1109I | GCAGC | 8 cut(s) | 94, 452, 523, 1120, 1687, 1753, 2239, 2267 |
| LweI | GCATC | 8 cut(s) | 13, 25, 225, 406, 825, 1744, 1999, 2224 |
| MaeI | CTAG | 7 cut(s) | 192, 581, 1215, 1428, 1482, 1566, 2394 |
| MaeIII | GTNAC | 5 cut(s) | 184, 665, 915, 1328, 2292 |
| MalI | GATC | 7 cut(s) | 1068, 1512, 2055, 2076, 2103, 2151, 2314 |
| MboI | GATC | 7 cut(s) | 1066, 1510, 2053, 2074, 2101, 2149, 2312 |
| MfeI | CAATTG | 1 cut(s) | 1695 |
| MflI | RGATCY | 5 cut(s) | 1066, 2053, 2074, 2149, 2312 |
| MhlI | GDGCHC | 2 cut(s) | 172, 1895 |
| MlsI | TGGCCA | 1 cut(s) | 1341 |
| MluNI | TGGCCA | 1 cut(s) | 1341 |
| MlyI | GAGTC | 8 cut(s) | 358, 646, 843, 970, 1046, 1153, 2300, 2450 |
| MmeI | TCCRAC | 2 cut(s) | 1187, 2478 |
| Mox20I | TGGCCA | 1 cut(s) | 1341 |
| MroI | TCCGGA | 1 cut(s) | 1225 |
| MroXI | GAANNNNTTC | 4 cut(s) | 789, 1270, 1489, 2388 |
| MscI | TGGCCA | 1 cut(s) | 1341 |
| MslI | CAYNNNNRTG | 5 cut(s) | 414, 877, 1937, 1954, 2435 |
| Msp20I | TGGCCA | 1 cut(s) | 1341 |
| MspA1I | CMGCKG | 1 cut(s) | 1127 |
| MspI | CCGG | 5 cut(s) | 155, 1199, 1226, 2350, 2404 |
| MspR9I | CCNGG | 6 cut(s) | 156, 570, 621, 1199, 1986, 2351 |
| MunI | CAATTG | 1 cut(s) | 1695 |
| Mva1269I | GAATGC | 1 cut(s) | 443 |
| MvaI | CCWGG | 3 cut(s) | 570, 621, 1986 |
| NciI | CCSGG | 3 cut(s) | 156, 1199, 2351 |
| NdeI | CATATG | 1 cut(s) | 138 |
| NdeII | GATC | 7 cut(s) | 1066, 1510, 2053, 2074, 2101, 2149, 2312 |
| NheI | GCTAGC | 1 cut(s) | 580 |
| NlaIV | GGNNCC | 8 cut(s) | 153, 170, 259, 369, 523, 1188, 1224, 1297 |
| NmeAIII | GCCGAG | 1 cut(s) | 1844 |
| NmuCI | GTSAC | 3 cut(s) | 184, 665, 2292 |
| NspI | RCATGY | 1 cut(s) | 779 |
| OliI | CACNNNNGTG | 1 cut(s) | 877 |
| PagI | TCATGA | 1 cut(s) | 2274 |
| PceI | AGGCCT | 1 cut(s) | 799 |
| PciI | ACATGT | 1 cut(s) | 775 |
| PctI | GAATGC | 1 cut(s) | 443 |
| PdmI | GAANNNNTTC | 4 cut(s) | 789, 1270, 1489, 2388 |
| PfeI | GAWTC | 9 cut(s) | 272, 1271, 1373, 1432, 1463, 1730, 1942, 2359, 2384 |
| PfoI | TCCNGGA | 1 cut(s) | 619 |
| PinAI | ACCGGT | 1 cut(s) | 2403 |
| PkrI | GCNGC | 9 cut(s) | 84, 144, 442, 513, 1135, 1702, 1768, 2254, 2257 |
| PleI | GAGTC | 8 cut(s) | 357, 646, 843, 969, 1046, 1153, 2299, 2450 |
| PpsI | GAGTC | 8 cut(s) | 357, 646, 843, 969, 1046, 1153, 2299, 2450 |
| PpuMI | RGGWCCY | 1 cut(s) | 521 |
| PscI | ACATGT | 1 cut(s) | 775 |
| PshBI | ATTAAT | 1 cut(s) | 641 |
| PsiI | TTATAA | 1 cut(s) | 395 |
| Psp5II | RGGWCCY | 1 cut(s) | 521 |
| Psp6I | CCWGG | 3 cut(s) | 568, 619, 1984 |
| PspGI | CCWGG | 3 cut(s) | 568, 619, 1984 |
| PspN4I | GGNNCC | 8 cut(s) | 153, 170, 259, 369, 523, 1188, 1224, 1297 |
| PspOMI | GGGCCC | 1 cut(s) | 168 |
| PspPI | GGNCC | 5 cut(s) | 168, 169, 258, 521, 2401 |
| PspPPI | RGGWCCY | 1 cut(s) | 521 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 534, 566, 1351, 1383 |
| PstI | CTGCAG | 4 cut(s) | 513, 1138, 2053, 2257 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2078, 2252 |
| PsuI | RGATCY | 5 cut(s) | 1066, 2053, 2074, 2149, 2312 |
| PvuII | CAGCTG | 1 cut(s) | 1127 |
| RsaI | GTAC | 3 cut(s) | 552, 1242, 2334 |
| RsaNI | GTAC | 3 cut(s) | 551, 1241, 2333 |
| RseI | CAYNNNNRTG | 5 cut(s) | 414, 877, 1937, 1954, 2435 |
| SatI | GCNGC | 9 cut(s) | 83, 143, 441, 512, 1134, 1701, 1767, 2253, 2256 |
| Sau3AI | GATC | 7 cut(s) | 1066, 1510, 2053, 2074, 2101, 2149, 2312 |
| Sau96I | GGNCC | 5 cut(s) | 168, 169, 258, 521, 2401 |
| SchI | GAGTC | 8 cut(s) | 358, 646, 843, 970, 1046, 1153, 2300, 2450 |
| ScrFI | CCNGG | 6 cut(s) | 156, 570, 621, 1199, 1986, 2351 |
| SduI | GDGCHC | 2 cut(s) | 172, 1895 |
| SfaNI | GCATC | 8 cut(s) | 13, 25, 225, 406, 825, 1744, 1999, 2224 |
| SfcI | CTRYAG | 8 cut(s) | 509, 1134, 1589, 1667, 1809, 1917, 2049, 2253 |
| SinI | GGWCC | 3 cut(s) | 258, 521, 2401 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 414, 877, 1937, 1954, 2435 |
| SmlI | CTYRAG | 3 cut(s) | 734, 1175, 2190 |
| SmoI | CTYRAG | 3 cut(s) | 734, 1175, 2190 |
| SseBI | AGGCCT | 1 cut(s) | 799 |
| SsiI | CCGC | 4 cut(s) | 143, 166, 401, 1856 |
| SspI | AATATT | 2 cut(s) | 1320, 1724 |
| SspMI | CTAG | 7 cut(s) | 192, 581, 1215, 1428, 1482, 1566, 2394 |
| StuI | AGGCCT | 1 cut(s) | 799 |
| StyD4I | CCNGG | 6 cut(s) | 154, 568, 619, 1197, 1984, 2349 |
| StyI | CCWWGG | 1 cut(s) | 1705 |
| TaaI | ACNGT | 5 cut(s) | 887, 938, 1109, 1292, 1813 |
| TaqI | TCGA | 2 cut(s) | 964, 2357 |
| TatI | WGTACW | 1 cut(s) | 2332 |
| TauI | GCSGC | 1 cut(s) | 145 |
| TfiI | GAWTC | 9 cut(s) | 272, 1271, 1373, 1432, 1463, 1730, 1942, 2359, 2384 |
| TscAI | CASTG | 3 cut(s) | 326, 666, 1114 |
| TseFI | GTSAC | 3 cut(s) | 184, 665, 2292 |
| TseI | GCWGC | 8 cut(s) | 82, 440, 511, 1133, 1700, 1766, 2252, 2255 |
| Tsp45I | GTSAC | 3 cut(s) | 184, 665, 2292 |
| TspGWI | ACGGA | 2 cut(s) | 485, 845 |
| TspRI | CASTG | 3 cut(s) | 326, 666, 1114 |
| VpaK11BI | GGWCC | 3 cut(s) | 258, 521, 2401 |
| VspI | ATTAAT | 1 cut(s) | 641 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1629 |
| XapI | RAATTY | 1 cut(s) | 283 |
| XceI | RCATGY | 1 cut(s) | 779 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1077 |
| XmiI | GTMKAC | 1 cut(s) | 2427 |
| XmnI | GAANNNNTTC | 4 cut(s) | 789, 1270, 1489, 2388 |
| XspI | CTAG | 7 cut(s) | 192, 581, 1215, 1428, 1482, 1566, 2394 |