Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006052

Physical Location & Seq

Genomic Coordinates Forward (+)

18382374 .. 18385809

Gene Structure 3436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g15050.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGGAGGGTAAAGAAGATGGGGAAGCATACGAAGAGCGGCCTTCGTTGCCTACTCAGGTTTTGCAGGAAATATCTGAGGAGGCATTTAAAGTGGCAGGGGAAACATTGCAAAATGTGATCTCAAGTAATTCGAGCATGCCACCATTGGCACCGGGGCATACGCGCTCCCAAAGTGAAGTTGTAAGTATGACACACAAACGGAGCAATAGCTTTCAAAAATTGAAAACTCAGATGCAGAAGGCTTGGAGATGGGGTGGAAGTTCACGGGATGGTTTGCGGTTGTCTTTCAATCCTGAGGTTTTGGCAAACCAAAAACGCCAGTGGTATCAGCGTCACTCCAAATCAAAGGGCCATATAAAATATACCGAGCCAAGTTCACTCTTTGAGCATTTTATTATTGCGGGGCTTCATCCTGATGCTAACCTTGACACTGCGGAGGATGCATTTGTTAAAAGAAAGAAATGGGAGATGGAGATGATAAACTGTGGAATTGTTGACCTTAAATTGCTACAGCAGCGGGGACCTCCAATTCCTACATTAGAACCTCAGATACTTTTTAAATATCCTCCTGGGAAGCGGTTTGATATGCGTTTGACAGATTTAGCTTCCTTTTGTTTTCCTGGAGGGGTTAAGGCACGGTTATTGGAGAAGACTCCATCACTAAGTGATTTAAATCAAGTTGTTTATGGACAGGAGCATTTAGGCAAAGATGATTTGTCATTTATTTTCTCACTCAAGGTGGCAGACAATGCAACACTTTATGGTGTTTGCCTACACGTGTCAGAAATTGTTCAGAGGCCTCCTGCTATCTTAGGCATCTCATCACCTAATTCTCATTCGACGGGAGGACTCTTCCGCTTTTTGGTTTCTGCACCTCGATGCTACTGTGTGCTATCCAGATTTCCTTTTTTTGAGTTACATTACGAGATGCTGAATAGTATCATTCAACAGGAGCGTCTGAAGCGAATAACACAATTTGCTAGTGAAATGGCCCTCAATGATTTTGTCCCTACATTGCCCAAAGTACAAGATTATGATGATGAGTCCCCTGAGAGGGAGTCTTTTGATAATTGGATGGACTCCGCAATACCAGTTAACAGTTCAATTGCACTTACAGTTGCTGGTGCAGGAATCAGACCGGAGGATGAGACTCCACCTTCTTCACTCAAGATATGGGAACTGCAGTCCCCTGAAAGTGTTTCTGCTAGTGAAAGTTCAGATTTTTGTCAAGTACGGTATTTAGACAAGGATGGTAGAAAGGATTCACAATGTTCTGATGACTATGGTTTTGAGGCCTCAGAAACTCGTTCAGAGGCTTCAGAAAGAATATGCGCAATCTATGGAAATGACCATACTTCTCCAGAGGTTGGGACATCTTTCTCCACCAGGAATCGCACATTGGAGCGTCTTGGCAGTTCTGAATCTCTATTCAGGCTTTGTCTATATATGCTGCTATATGAGATTAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN dDENN uDENN

Protein Analysis

491

Amino Acids

55.33

Weight (kDa)

5.61

Isoelectric Point (pI)

51.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20320 AT2G20320
fragaria_vesca	FvH4_2g20280
malus_domestica	MD05G1186700.v1.1 MD10G1174800.v1.1
prunus_persica	Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1
pyrus_communis	pycom05g17090 pycom10g15050
rosa_chinensis	RchiOBHm_Chr6g0286081
rosa_laevigata	RLG00000012584
rosa_multiflora	Rmu_sc0023663.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182470
rosa_rugosa	Rorug06G0178800
rosa_samantha	Rh3BG272300 Rh6AG291200 Rh6BG294500 Rh6CG294100 Rh6DG286100
rosa_wichuraiana	Rw6G025090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1333
AccB1I	GGYRCC	1 cut(s)	148
AccB7I	CCANNNNNTGG	1 cut(s)	1367
AccBSI	CCGCTC	1 cut(s)	37
AccII	CGCG	1 cut(s)	163
AciI	CCGC	8 cut(s)	37, 277, 401, 434, 517, 577, 856, 1083
AcuI	CTGAAG	2 cut(s)	980, 1302
AcvI	CACGTG	1 cut(s)	778
AdeI	CACNNNGTG	1 cut(s)	665
AfaI	GTAC	2 cut(s)	1026, 1233
AfiI	CCNNNNNNNGG	4 cut(s)	862, 1053, 1054, 1367
AflIII	ACRYGT	2 cut(s)	775, 777
AgsI	TTSAA	5 cut(s)	215, 223, 289, 947, 1104
AjnI	CCWGG	3 cut(s)	568, 619, 1385
AjuI	GAANNNNNNNTTGG	2 cut(s)	1382, 1414
AluBI	AGCT	2 cut(s)	210, 605
AluI	AGCT	2 cut(s)	210, 605
Alw26I	GTCTC	1 cut(s)	1142
AlwNI	CAGNNNCTG	1 cut(s)	1121
AoxI	GGCC	5 cut(s)	38, 349, 797, 990, 1293
ApeKI	GCWGC	2 cut(s)	514, 1450
ArsI	GACNNNNNNTTYG	2 cut(s)	1271, 1303
Asp700I	GAANNNNTTC	2 cut(s)	789, 1261
AspLEI	GCGC	2 cut(s)	165, 1334
AspS9I	GGNCC	3 cut(s)	349, 521, 991
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	1 cut(s)	816
AvaII	GGWCC	1 cut(s)	521
AxyI	CCTNAGG	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	148
BbrPI	CACGTG	1 cut(s)	778
BbsI	GAAGAC	1 cut(s)	656
BbvI	GCAGC	2 cut(s)	526, 1437
BccI	CCATC	7 cut(s)	11, 243, 263, 463, 664, 1069, 1244
BciT130I	CCWGG	3 cut(s)	570, 621, 1387
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	1142
BfaI	CTAG	2 cut(s)	981, 1206
BfmI	CTRYAG	2 cut(s)	509, 1181
BisI	GCNGC	3 cut(s)	38, 515, 1451
BlsI	GCNGC	3 cut(s)	39, 516, 1452
Bme1390I	CCNGG	4 cut(s)	153, 570, 621, 1387
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	3 cut(s)	349, 521, 991
BmiI	GGNNCC	2 cut(s)	150, 522
BmrFI	CCNGG	4 cut(s)	153, 570, 621, 1387
BmsI	GCATC	6 cut(s)	222, 406, 430, 825, 869, 918
BpiI	GAAGAC	1 cut(s)	656
BpmI	CTGGAG	2 cut(s)	642, 1344
BpuEI	CTTGAG	3 cut(s)	106, 719, 1151
BpuMI	CCSGG	1 cut(s)	153
BsaAI	YACGTR	1 cut(s)	778
BsaBI	GATNNNNATC	1 cut(s)	672
BsaJI	CCNNGG	2 cut(s)	152, 569
BsaWI	WCCGGW	1 cut(s)	1138
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bsc4I	CCNNNNNNNGG	4 cut(s)	862, 1053, 1054, 1367
Bse1I	ACTGG	2 cut(s)	319, 1091
Bse21I	CCTNAGG	1 cut(s)	294
Bse3DI	GCAATG	2 cut(s)	104, 1013
Bse8I	GATNNNNATC	1 cut(s)	672
BseBI	CCWGG	3 cut(s)	570, 621, 1387
BseDI	CCNNGG	2 cut(s)	152, 569
BseGI	GGATG	6 cut(s)	274, 409, 445, 1080, 1150, 1255
BseJI	GATNNNNATC	1 cut(s)	672
BseLI	CCNNNNNNNGG	4 cut(s)	862, 1053, 1054, 1367
BseMI	GCAATG	2 cut(s)	104, 1013
BseMII	CTCAG	7 cut(s)	66, 68, 242, 285, 560, 1041, 1311
BseNI	ACTGG	2 cut(s)	319, 1091
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	2 cut(s)	526, 1437
BsgI	GTGCAG	2 cut(s)	855, 1146
Bsh1236I	CGCG	1 cut(s)	163
BshFI	GGCC	5 cut(s)	40, 351, 799, 992, 1295
BshNI	GGYRCC	1 cut(s)	148
BsiSI	CCGG	2 cut(s)	152, 1139
BslFI	GGGAC	5 cut(s)	534, 992, 1030, 1171, 1384
BslI	CCNNNNNNNGG	4 cut(s)	862, 1053, 1054, 1367
BsmAI	GTCTC	1 cut(s)	1142
BsmFI	GGGAC	5 cut(s)	534, 992, 1030, 1171, 1384
BsnI	GGCC	5 cut(s)	40, 351, 799, 992, 1295
Bsp143I	GATC	1 cut(s)	117
BspACI	CCGC	8 cut(s)	37, 277, 401, 434, 517, 577, 856, 1083
BspANI	GGCC	5 cut(s)	40, 351, 799, 992, 1295
BspCNI	CTCAG	7 cut(s)	67, 67, 241, 286, 559, 1042, 1310
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	2 cut(s)	150, 522
BspMAI	CTGCAG	1 cut(s)	1185
BspQI	GCTCTTC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	148
BsrBI	CCGCTC	1 cut(s)	37
BsrDI	GCAATG	2 cut(s)	104, 1013
BsrI	ACTGG	2 cut(s)	319, 1091
BssECI	CCNNGG	2 cut(s)	152, 569
BssMI	GATC	1 cut(s)	117
Bst2UI	CCWGG	3 cut(s)	570, 621, 1387
Bst4CI	ACNGT	6 cut(s)	485, 639, 887, 1100, 1117, 1236
Bst6I	CTCTTC	2 cut(s)	27, 857
BstAPI	GCANNNNNTGC	1 cut(s)	749
BstBAI	YACGTR	1 cut(s)	778
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	9 cut(s)	54, 75, 228, 294, 546, 662, 811, 1050, 1297
BstF5I	GGATG	6 cut(s)	274, 409, 445, 1080, 1150, 1255
BstFNI	CGCG	1 cut(s)	163
BstHHI	GCGC	2 cut(s)	165, 1334
BstKTI	GATC	1 cut(s)	120
BstMAI	GTCTC	1 cut(s)	1142
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 440, 514, 749, 961
BstNI	CCWGG	3 cut(s)	570, 621, 1387
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	4 cut(s)	151, 568, 619, 1385
BstSFI	CTRYAG	2 cut(s)	509, 1181
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	2 cut(s)	526, 1437
BstV2I	GAAGAC	1 cut(s)	656
Bsu36I	CCTNAGG	1 cut(s)	294
BsuRI	GGCC	5 cut(s)	40, 351, 799, 992, 1295
BtsCI	GGATG	6 cut(s)	274, 409, 445, 1080, 1150, 1255
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	2 cut(s)	326, 429
Cac8I	GCNNGC	1 cut(s)	137
CaiI	CAGNNNCTG	1 cut(s)	1121
CfoI	GCGC	2 cut(s)	165, 1334
Cfr13I	GGNCC	3 cut(s)	349, 521, 991
CseI	GACGC	3 cut(s)	320, 944, 1394
Csp6I	GTAC	2 cut(s)	1025, 1232
CviAII	CATG	1 cut(s)	136
CviQI	GTAC	2 cut(s)	1025, 1232
DdeI	CTNAG	9 cut(s)	54, 75, 228, 294, 546, 662, 811, 1050, 1297
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
DraI	TTTAAA	3 cut(s)	88, 559, 672
DraIII	CACNNNGTG	1 cut(s)	665
Eam1104I	CTCTTC	2 cut(s)	27, 857
EarI	CTCTTC	2 cut(s)	27, 857
Eco147I	AGGCCT	2 cut(s)	799, 1295
Eco47I	GGWCC	1 cut(s)	521
Eco57I	CTGAAG	2 cut(s)	980, 1302
Eco72I	CACGTG	1 cut(s)	778
Eco81I	CCTNAGG	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	521
EcoRII	CCWGG	3 cut(s)	568, 619, 1385
EcoT22I	ATGCAT	1 cut(s)	445
FaeI	CATG	1 cut(s)	139
FaqI	GGGAC	5 cut(s)	534, 992, 1030, 1171, 1384
FatI	CATG	1 cut(s)	135
FauI	CCCGC	2 cut(s)	394, 510
Fnu4HI	GCNGC	3 cut(s)	38, 515, 1451
FokI	GGATG	6 cut(s)	281, 396, 452, 1087, 1157, 1262
Fsp4HI	GCNGC	3 cut(s)	38, 515, 1451
FspBI	CTAG	2 cut(s)	981, 1206
FspI	TGCGCA	1 cut(s)	1333
GlaI	GCGC	2 cut(s)	164, 1333
GluI	GCNGC	3 cut(s)	38, 515, 1451
GsuI	CTGGAG	2 cut(s)	642, 1344
HaeIII	GGCC	5 cut(s)	40, 351, 799, 992, 1295
HapII	CCGG	2 cut(s)	152, 1139
HgaI	GACGC	3 cut(s)	320, 944, 1394
HhaI	GCGC	2 cut(s)	165, 1334
Hin1II	CATG	1 cut(s)	139
Hin6I	GCGC	2 cut(s)	163, 1332
HinP1I	GCGC	2 cut(s)	163, 1332
HincII	GTYRAC	2 cut(s)	496, 1096
HindII	GTYRAC	2 cut(s)	496, 1096
HpaI	GTTAAC	1 cut(s)	1096
HpaII	CCGG	2 cut(s)	152, 1139
HphI	GGTGA	1 cut(s)	816
Hpy166II	GTNNAC	4 cut(s)	263, 377, 496, 1096
Hpy188III	TCNNGA	5 cut(s)	293, 413, 897, 1168, 1361
Hpy8I	GTNNAC	4 cut(s)	263, 377, 496, 1096
Hpy99I	CGWCG	1 cut(s)	844
HpyAV	CCTTC	3 cut(s)	51, 232, 1167
HpyCH4III	ACNGT	6 cut(s)	485, 639, 887, 1100, 1117, 1236
HpyCH4IV	ACGT	1 cut(s)	777
HpyCH4V	TGCA	9 cut(s)	64, 109, 235, 443, 752, 872, 1109, 1127, 1183
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 440, 514, 749, 961
HpyF3I	CTNAG	9 cut(s)	54, 75, 228, 294, 546, 662, 811, 1050, 1297
HpySE526I	ACGT	1 cut(s)	777
Hsp92II	CATG	1 cut(s)	139
HspAI	GCGC	2 cut(s)	163, 1332
KspAI	GTTAAC	1 cut(s)	1096
Kzo9I	GATC	1 cut(s)	117
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	5 cut(s)	170, 201, 694, 952, 1402
Lsp1109I	GCAGC	2 cut(s)	526, 1437
LweI	GCATC	6 cut(s)	222, 406, 430, 825, 869, 918
MaeI	CTAG	2 cut(s)	981, 1206
MaeII	ACGT	1 cut(s)	777
MaeIII	GTNAC	2 cut(s)	332, 915
MalI	GATC	1 cut(s)	119
MbiI	CCGCTC	1 cut(s)	37
MboI	GATC	1 cut(s)	117
MboII	GAAGA	5 cut(s)	26, 44, 661, 844, 1152
MfeI	CAATTG	1 cut(s)	1104
MlyI	GAGTC	6 cut(s)	646, 843, 1052, 1067, 1073, 1144
Mph1103I	ATGCAT	1 cut(s)	445
MroXI	GAANNNNTTC	2 cut(s)	789, 1261
MseI	TTAA	8 cut(s)	87, 450, 501, 558, 630, 671, 1095, 1464
MslI	CAYNNNNRTG	2 cut(s)	414, 877
MspA1I	CMGCKG	1 cut(s)	517
MspI	CCGG	2 cut(s)	152, 1139
MspR9I	CCNGG	4 cut(s)	153, 570, 621, 1387
MunI	CAATTG	1 cut(s)	1104
MvaI	CCWGG	3 cut(s)	570, 621, 1387
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	5 cut(s)	46, 440, 514, 749, 961
NciI	CCSGG	1 cut(s)	153
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	2 cut(s)	150, 522
NmuCI	GTSAC	1 cut(s)	332
NsbI	TGCGCA	1 cut(s)	1333
NsiI	ATGCAT	1 cut(s)	445
NspI	RCATGY	1 cut(s)	139
PaeI	GCATGC	1 cut(s)	139
PceI	AGGCCT	2 cut(s)	799, 1295
PciSI	GCTCTTC	1 cut(s)	27
PdmI	GAANNNNTTC	2 cut(s)	789, 1261
PfeI	GAWTC	4 cut(s)	1131, 1262, 1390, 1421
PflMI	CCANNNNNTGG	1 cut(s)	1367
PfoI	TCCNGGA	1 cut(s)	619
PkrI	GCNGC	3 cut(s)	39, 516, 1452
PleI	GAGTC	6 cut(s)	646, 843, 1051, 1066, 1073, 1144
PmaCI	CACGTG	1 cut(s)	778
PmlI	CACGTG	1 cut(s)	778
PpsI	GAGTC	6 cut(s)	646, 843, 1051, 1066, 1073, 1144
Ppu21I	YACGTR	1 cut(s)	778
PpuMI	RGGWCCY	1 cut(s)	521
Psp5II	RGGWCCY	1 cut(s)	521
Psp6I	CCWGG	3 cut(s)	568, 619, 1385
PspCI	CACGTG	1 cut(s)	778
PspGI	CCWGG	3 cut(s)	568, 619, 1385
PspN4I	GGNNCC	2 cut(s)	150, 522
PspPI	GGNCC	3 cut(s)	349, 521, 991
PspPPI	RGGWCCY	1 cut(s)	521
PsrI	GAACNNNNNNTAC	2 cut(s)	534, 566
PstI	CTGCAG	1 cut(s)	1185
PstNI	CAGNNNCTG	1 cut(s)	1121
RsaI	GTAC	2 cut(s)	1026, 1233
RsaNI	GTAC	2 cut(s)	1025, 1232
RseI	CAYNNNNRTG	2 cut(s)	414, 877
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	8 cut(s)	87, 450, 501, 558, 630, 671, 1095, 1464
SatI	GCNGC	3 cut(s)	38, 515, 1451
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	3 cut(s)	349, 521, 991
SchI	GAGTC	6 cut(s)	646, 843, 1052, 1067, 1073, 1144
ScrFI	CCNGG	4 cut(s)	153, 570, 621, 1387
SfaNI	GCATC	6 cut(s)	222, 406, 430, 825, 869, 918
SfcI	CTRYAG	2 cut(s)	509, 1181
SinI	GGWCC	1 cut(s)	521
SmiI	ATTTAAAT	1 cut(s)	672
SmiMI	CAYNNNNRTG	2 cut(s)	414, 877
SmlI	CTYRAG	3 cut(s)	121, 734, 1166
SmoI	CTYRAG	3 cut(s)	121, 734, 1166
SphI	GCATGC	1 cut(s)	139
SseBI	AGGCCT	2 cut(s)	799, 1295
SsiI	CCGC	8 cut(s)	37, 277, 401, 434, 517, 577, 856, 1083
SspMI	CTAG	2 cut(s)	981, 1206
StuI	AGGCCT	2 cut(s)	799, 1295
StyD4I	CCNGG	4 cut(s)	151, 568, 619, 1385
SwaI	ATTTAAAT	1 cut(s)	672
TaaI	ACNGT	6 cut(s)	485, 639, 887, 1100, 1117, 1236
TaiI	ACGT	1 cut(s)	780
TaqI	TCGA	3 cut(s)	131, 839, 877
TatI	WGTACW	1 cut(s)	1024
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	4 cut(s)	1131, 1262, 1390, 1421
Tru1I	TTAA	8 cut(s)	87, 450, 501, 558, 630, 671, 1095, 1464
Tru9I	TTAA	8 cut(s)	87, 450, 501, 558, 630, 671, 1095, 1464
TscAI	CASTG	2 cut(s)	326, 436
TseFI	GTSAC	1 cut(s)	332
TseI	GCWGC	2 cut(s)	514, 1450
Tsp45I	GTSAC	1 cut(s)	332
TspDTI	ATGAA	1 cut(s)	398
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	2 cut(s)	326, 436
Van91I	CCANNNNNTGG	1 cut(s)	1367
VpaK11BI	GGWCC	1 cut(s)	521
XceI	RCATGY	1 cut(s)	139
XmnI	GAANNNNTTC	2 cut(s)	789, 1261
XspI	CTAG	2 cut(s)	981, 1206
Zsp2I	ATGCAT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.