Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006052

Physical Location & Seq

Genomic Coordinates Reverse (-)

28227111 .. 28228483

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0178800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGGTGTCATGTCTAGACTTAACCTTCCATATACTGAGGTATACTCGAATGGCATAGAACATATGGTTGGTCATCTTAAAGGTGGGGATGATTTAGAGGTGGACTTAACAAGAACAGAGGAGGGTGACAAGTGTGCAACAAAAGGCAAAGTCAGGCCTTCCGAGAATAGAGAAGAAAGTAAAAAAAAAGTTTACCGCTTCAAACCTAAGGTGGCAAAGGATCGCATCCCTCCTCCAGTAGTCAAAAGTGCCTTTGGTGTTAGAGTGATACTGCCGTCGAGTTTAGCTGATGGAAAAGGGAAGAAAAGGAAAGCCGCTTCTTGCTCAAGACCTAGTGGAGCTACTAAGCAAAAGGTTACAGTTGATGCCTCACCTGCTGTCCGCAGGCGGAGCTCTCGCGTTGCTAACATGAGTTTTTCTAAACCTAAACCGTCGTCTAAGGGTGCTGCTCATGTTGATCTTAGTGACGCGCCAAGTGACGACATCGAAGGTAGCCCCCTTAGTGATAATGCGGAATCCCTTGGAGATGAGGATGATCGGGGAGCTCATGCTGCTGTCTCGATGGAGAATCACGAGCATAATGTGGCTGGTGCTAGTGCTCTAATGAAGGAATCTGCTGTAAATGTCTGTCCTTGTGCAGATAATCGTAACAAGCAGGTGAGCAAAGTTGACATCGGTATAAATGATTTGGTGAAAGAACTGCTGTCGACGATAGTCTTTGTGAGGATGACCATAATGAGCGGATACGTAGTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN dDENN uDENN

Protein Analysis

252

Amino Acids

27.15

Weight (kDa)

9.17

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20320 AT2G20320
fragaria_vesca	FvH4_2g20280
malus_domestica	MD05G1186700.v1.1 MD10G1174800.v1.1
prunus_persica	Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1
pyrus_communis	pycom05g17090 pycom10g15050
rosa_chinensis	RchiOBHm_Chr6g0286081
rosa_laevigata	RLG00000012584
rosa_multiflora	Rmu_sc0023663.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182470
rosa_rugosa	Rorug06G0178800
rosa_samantha	Rh3BG272300 Rh6AG291200 Rh6BG294500 Rh6CG294100 Rh6DG286100
rosa_wichuraiana	Rw6G025090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	382, 646
Acc36I	ACCTGC	2 cut(s)	382, 646
AccBSI	CCGCTC	1 cut(s)	741
AccI	GTMKAC	2 cut(s)	42, 707
AccII	CGCG	2 cut(s)	399, 470
AciI	CCGC	6 cut(s)	196, 315, 382, 388, 512, 741
AclWI	GGATC	1 cut(s)	228
AgsI	TTSAA	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AluBI	AGCT	4 cut(s)	287, 341, 393, 545
AluI	AGCT	4 cut(s)	287, 341, 393, 545
Alw21I	GWGCWC	3 cut(s)	395, 547, 601
Alw26I	GTCTC	1 cut(s)	562
AlwI	GGATC	1 cut(s)	228
AoxI	GGCC	1 cut(s)	155
ApeKI	GCWGC	2 cut(s)	446, 551
AspLEI	GCGC	1 cut(s)	472
AsuHPI	GGTGA	4 cut(s)	137, 363, 670, 703
AxyI	CCTNAGG	1 cut(s)	207
BaeI	ACNNNNGTAYC	2 cut(s)	260, 293
BanII	GRGCYC	2 cut(s)	395, 547
BauI	CACGAG	1 cut(s)	572
Bbv12I	GWGCWC	3 cut(s)	395, 547, 601
BbvI	GCAGC	2 cut(s)	433, 538
BccI	CCATC	2 cut(s)	284, 556
BceAI	ACGGC	1 cut(s)	259
BciVI	GTATCC	1 cut(s)	737
BcoDI	GTCTC	1 cut(s)	562
BfaI	CTAG	3 cut(s)	15, 333, 594
BfuAI	ACCTGC	2 cut(s)	382, 646
BfuI	GTATCC	1 cut(s)	737
BisI	GCNGC	3 cut(s)	315, 447, 552
BlsI	GCNGC	3 cut(s)	316, 448, 553
BmsI	GCATC	2 cut(s)	234, 355
BoxI	GACNNNNGTC	1 cut(s)	713
BplI	GAGNNNNNCTC	2 cut(s)	29, 61
BpmI	CTGGAG	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	310
BsaAI	YACGTR	1 cut(s)	748
BsaJI	CCNNGG	1 cut(s)	520
Bse1I	ACTGG	1 cut(s)	236
Bse21I	CCTNAGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	4 cut(s)	94, 225, 538, 732
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	236
BseRI	GAGGAG	2 cut(s)	134, 222
BseXI	GCAGC	2 cut(s)	433, 538
BsgI	GTGCAG	1 cut(s)	657
Bsh1236I	CGCG	2 cut(s)	399, 470
BshFI	GGCC	1 cut(s)	157
BsiHKAI	GWGCWC	3 cut(s)	395, 547, 601
BsmAI	GTCTC	1 cut(s)	562
BsnI	GGCC	1 cut(s)	157
Bsp1286I	GDGCHC	3 cut(s)	395, 547, 601
Bsp143I	GATC	3 cut(s)	220, 457, 535
BspACI	CCGC	6 cut(s)	196, 315, 382, 388, 512, 741
BspANI	GGCC	1 cut(s)	157
BspCNI	CTCAG	1 cut(s)	28
BspFNI	CGCG	2 cut(s)	399, 470
BspMI	ACCTGC	2 cut(s)	382, 646
BspPI	GGATC	1 cut(s)	228
BsrBI	CCGCTC	1 cut(s)	741
BsrI	ACTGG	1 cut(s)	236
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	3 cut(s)	220, 457, 535
BssNAI	GTATAC	1 cut(s)	43
BssSI	CACGAG	1 cut(s)	572
BssT1I	CCWWGG	1 cut(s)	520
Bst1107I	GTATAC	1 cut(s)	43
Bst2BI	CACGAG	1 cut(s)	572
Bst4CI	ACNGT	2 cut(s)	361, 432
BstBAI	YACGTR	1 cut(s)	748
BstC8I	GCNNGC	1 cut(s)	386
BstDEI	CTNAG	6 cut(s)	36, 207, 345, 438, 461, 500
BstF5I	GGATG	4 cut(s)	94, 225, 538, 732
BstFNI	CGCG	2 cut(s)	399, 470
BstHHI	GCGC	1 cut(s)	472
BstKTI	GATC	3 cut(s)	223, 460, 538
BstMAI	GTCTC	1 cut(s)	562
BstMBI	GATC	3 cut(s)	220, 457, 535
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 390, 551
BstPAI	GACNNNNGTC	1 cut(s)	713
BstSNI	TACGTA	1 cut(s)	748
BstUI	CGCG	2 cut(s)	399, 470
BstV1I	GCAGC	2 cut(s)	433, 538
BstZ17I	GTATAC	1 cut(s)	43
Bsu36I	CCTNAGG	1 cut(s)	207
BsuI	GTATCC	1 cut(s)	737
BsuRI	GGCC	1 cut(s)	157
BtsCI	GGATG	4 cut(s)	94, 225, 538, 732
BveI	ACCTGC	2 cut(s)	382, 646
Cac8I	GCNNGC	1 cut(s)	386
CfoI	GCGC	1 cut(s)	472
CseI	GACGC	1 cut(s)	476
CviAII	CATG	4 cut(s)	10, 409, 452, 548
CviJI	RGCY	8 cut(s)	157, 287, 314, 341, 393, 495, 545, 587
CviKI_1	RGCY	8 cut(s)	157, 287, 314, 341, 393, 495, 545, 587
DdeI	CTNAG	6 cut(s)	36, 207, 345, 438, 461, 500
DpnI	GATC	3 cut(s)	222, 459, 537
DpnII	GATC	3 cut(s)	220, 457, 535
EciI	GGCGGA	1 cut(s)	403
Ecl136II	GAGCTC	2 cut(s)	393, 545
Eco105I	TACGTA	1 cut(s)	748
Eco130I	CCWWGG	1 cut(s)	520
Eco147I	AGGCCT	1 cut(s)	157
Eco24I	GRGCYC	2 cut(s)	395, 547
Eco53kI	GAGCTC	2 cut(s)	393, 545
Eco81I	CCTNAGG	1 cut(s)	207
EcoICRI	GAGCTC	2 cut(s)	393, 545
EcoT14I	CCWWGG	1 cut(s)	520
EcoT38I	GRGCYC	2 cut(s)	395, 547
ErhI	CCWWGG	1 cut(s)	520
FaeI	CATG	4 cut(s)	13, 412, 455, 551
FatI	CATG	4 cut(s)	9, 408, 451, 547
FauNDI	CATATG	1 cut(s)	63
FblI	GTMKAC	2 cut(s)	42, 707
Fnu4HI	GCNGC	3 cut(s)	315, 447, 552
FokI	GGATG	4 cut(s)	101, 212, 545, 739
FriOI	GRGCYC	2 cut(s)	395, 547
Fsp4HI	GCNGC	3 cut(s)	315, 447, 552
FspBI	CTAG	3 cut(s)	15, 333, 594
GlaI	GCGC	1 cut(s)	471
GluI	GCNGC	3 cut(s)	315, 447, 552
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	157
HgaI	GACGC	1 cut(s)	476
HhaI	GCGC	1 cut(s)	472
Hin1II	CATG	4 cut(s)	13, 412, 455, 551
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HincII	GTYRAC	2 cut(s)	670, 708
HindII	GTYRAC	2 cut(s)	670, 708
HinfI	GANTC	3 cut(s)	515, 568, 611
HphI	GGTGA	4 cut(s)	137, 363, 670, 703
Hpy166II	GTNNAC	5 cut(s)	43, 103, 193, 670, 708
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	4 cut(s)	15, 327, 559, 572
Hpy8I	GTNNAC	5 cut(s)	43, 103, 193, 670, 708
Hpy99I	CGWCG	3 cut(s)	280, 436, 712
HpyAV	CCTTC	4 cut(s)	35, 168, 482, 601
HpyCH4III	ACNGT	2 cut(s)	361, 432
HpyCH4IV	ACGT	1 cut(s)	747
HpyCH4V	TGCA	2 cut(s)	137, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 390, 551
HpyF3I	CTNAG	6 cut(s)	36, 207, 345, 438, 461, 500
HpySE526I	ACGT	1 cut(s)	747
Hsp92II	CATG	4 cut(s)	13, 412, 455, 551
HspAI	GCGC	1 cut(s)	470
Kzo9I	GATC	3 cut(s)	220, 457, 535
LmnI	GCTCC	3 cut(s)	338, 390, 542
LpnPI	CCDG	6 cut(s)	139, 249, 370, 387, 573, 641
Lsp1109I	GCAGC	2 cut(s)	433, 538
LweI	GCATC	2 cut(s)	234, 355
MaeI	CTAG	3 cut(s)	15, 333, 594
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	5 cut(s)	125, 355, 464, 476, 647
MalI	GATC	3 cut(s)	222, 459, 537
MbiI	CCGCTC	1 cut(s)	741
MboI	GATC	3 cut(s)	220, 457, 535
MboII	GAAGA	2 cut(s)	185, 313
MhlI	GDGCHC	3 cut(s)	395, 547, 601
MnlI	CCTC	9 cut(s)	31, 91, 112, 115, 240, 243, 379, 523, 717
MseI	TTAA	3 cut(s)	21, 78, 107
MvnI	CGCG	2 cut(s)	399, 470
MwoI	GCNNNNNNNGC	3 cut(s)	374, 390, 551
NdeI	CATATG	1 cut(s)	63
NdeII	GATC	3 cut(s)	220, 457, 535
NlaIII	CATG	4 cut(s)	13, 412, 455, 551
NmuCI	GTSAC	3 cut(s)	125, 464, 476
PaqCI	CACCTGC	2 cut(s)	382, 646
PceI	AGGCCT	1 cut(s)	157
PfeI	GAWTC	3 cut(s)	515, 568, 611
PkrI	GCNGC	3 cut(s)	316, 448, 553
Ppu21I	YACGTR	1 cut(s)	748
PshAI	GACNNNNGTC	1 cut(s)	713
Psp124BI	GAGCTC	2 cut(s)	395, 547
SacI	GAGCTC	2 cut(s)	395, 547
SalI	GTCGAC	1 cut(s)	706
SaqAI	TTAA	3 cut(s)	21, 78, 107
SatI	GCNGC	3 cut(s)	315, 447, 552
Sau3AI	GATC	3 cut(s)	220, 457, 535
SduI	GDGCHC	3 cut(s)	395, 547, 601
SfaNI	GCATC	2 cut(s)	234, 355
SmlI	CTYRAG	1 cut(s)	325
SmoI	CTYRAG	1 cut(s)	325
SnaBI	TACGTA	1 cut(s)	748
SseBI	AGGCCT	1 cut(s)	157
SsiI	CCGC	6 cut(s)	196, 315, 382, 388, 512, 741
SspMI	CTAG	3 cut(s)	15, 333, 594
SstI	GAGCTC	2 cut(s)	395, 547
StuI	AGGCCT	1 cut(s)	157
StyI	CCWWGG	1 cut(s)	520
TaaI	ACNGT	2 cut(s)	361, 432
TaiI	ACGT	1 cut(s)	750
TaqI	TCGA	5 cut(s)	47, 278, 486, 560, 707
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	3 cut(s)	515, 568, 611
Tru1I	TTAA	3 cut(s)	21, 78, 107
Tru9I	TTAA	3 cut(s)	21, 78, 107
TseFI	GTSAC	3 cut(s)	125, 464, 476
TseI	GCWGC	2 cut(s)	446, 551
Tsp45I	GTSAC	3 cut(s)	125, 464, 476
TspDTI	ATGAA	1 cut(s)	620
XbaI	TCTAGA	1 cut(s)	14
XmiI	GTMKAC	2 cut(s)	42, 707
XspI	CTAG	3 cut(s)	15, 333, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.