Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006052

Physical Location & Seq

Genomic Coordinates Reverse (-)

20223639 .. 20231309

Gene Structure 7671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012584

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2430 bp

ATGAGCTTAGTGTTTGAAATGGATGCAAAAGAAGATGCTGAAGGACATGAAGAGGAGGGTTCGTCCCCCATTCAGGTTATATCTGAGGAGGCATGCACATTGGCAGGAGAAGCCCCCAATAACTTGGCCAGTCCGAATATGCCGCCATTGGCACCGGGGAATGGGCATAGGCGGACCCAAAGTGATGTTTTGACCACCAAACACAGGCGCAGTCATAGCTTTCAGAGATTGAAAAACCAAATGCAGAAGGCTTGGAGATGGGGGACCAATCAGGATTCCCGGCTGGCTTTCAATCCTGAGGTTTTGGCAAACCAAAAACGCCAGTGGTATCAGCTTCACTCCAAATCAAAGGGTCATGTAAATTATCAGGAGCCAACTTCACTCTTTGAGCATTTTATAATTGCGGGGCTTCATCCAGATACTAATCTTAAAAATGCCGAGGCAGCATTCATTAAAAGAAAGAGATGGGAGACGGACATGATAAGCTATGGAATTACCGACCTTAAATTACTGCAGCAGAAGGGACCTCCAGCCCCAATATTAGAACCTCAGGTACTTTTTAAATATCCTCCCGGGAAGAGGCTAGCGATGCGTTTGAAAGATTTAGCTTCCTTTTGTTTTCCTGGAGGTGTTAAGGCACGATTAATGGAGAAGACTCCATCACTAAGTGACCTTAATCAAATTGTGTATGGACAGGAGCATTTAGGCAAAGATGATTTAGCATTTATCTTTTCACTCAAGGTAGCAGACAATGCAACACTTTATGGTATTTGCCTACATGTGTTGGAAATAGTTCAGAGGCCTCCTGCTATCTTAGGCATCACATCACCTCTTCCTCATTCATCTGAAGGACTCTTCCGTTTTTTGGTTTCTGCACCTCGGTGCTACTGTCTGTTATCCAAATATCCTTTTTTTGAGTTACATTACGAGATGTTGAACAGTATCATTCAACAGGAGCGCCTGAGTCGAATAACACAACTTGCTAATGGAATGAGCCTCAATGACCATGTCCCTTCAATGCCCAAAATAGATGATGAAATGAATAATAATGAGGAGTCCCCTGAGACCGAGTCTTTTGATGATTGGATGAATTCTGCAATCCCTGTTGACAGTGCAATAGCCCGTACAGCTGTTGCTGCAGGAATTACACCTGATGATGAGACTTCAACTTCTTCACTCAAGATATGGGAACCACAGTCCCCGGAAAGTGCTTCTGCTAGTGAGGCTCCAGATTTTATTCAAGTCCGCTATTTAGATAAGGATGATAGAAAGGATTCACAATGTTTTGATGACGGTGGTTCCTCAGAAACTTCAGAAAGAATATATGGAAGTCACACAAATGGCCATACTTCACGTGAGAGTCTTGGGAGTTCTGAATGTCTATTTAGAAATGGTCATACTTCTCCAGAAGTTGGGATATCTTTCTCCAGGAATCGCACATTGGAGCGTTTTGGGAGTTCTGAATCTCTATTCAGTCCAGCTAGAAGCATGTCAGAGGATGATGATGATGACCTTTCCTCAACTTGTGAGCAAGATTTTAGCGATGACTTGATAATGGCATGGGCTAGGGAGAATAAAAATGATTTGCTACAGATTGTATGTGGTTTTCATGCTCTTCCTCTTCCCGAACGAGGAAGTGAGTTAGTTTTCCAACCTCTTGAACATCTACAGGCAATCCAGTATAATCGACCTCCAATTGCTGCCCTTGGTTTTGATGAAAAAAATTTCGATTCATCTGAAGATCCTGGGGTTGATGCAAAGTTGGCTGCTGCTGAGGAAGCGCTGTCACTATCACTGTGGACAACTGCTACAATTTGCCGAGTTCTCTCTGTTGAAAGTATTTTGGCATTGGTTGCGGGAGTACTACTGGAAAAGCAAGTGATATTAGTATGCCCTAATCTGGGTGTTCTATCAGCTACAGTGTTATCTCTTATACCCATGATTTGTCCATTTCAATGGCAGAGTTTAATGCTTCCTGTTCTACCAGGGAAAATGCTGGATTTTCTTGATGCCCCAGTTCCCTTCATTATTGGGATAGAACAAGTTCCTGCAGATCTAAGGAAGAAAACATCAGATCCTGTTGTAGTTAACGTGCTCATGGATCAGGTGAAACTGTCTCATCACTTGCCAACATTACCACGATATAGAGATCTTGCCCTTGAACTCGCGCCAATCCATTCTAAACTGTCACTCGAAGGTTCATTTGCTAAAAAGCATCCTGTATATAGGTGCAACGAAGTGCAGCTAAGGTCTTACACCATAACAAGTGTACAGTCAAATAATGACAGGGTTTCGTTACTTCTCAAAGATAGCTTCATTGATTCCTTTCCTAGTAAGGACCGGTCATTTATCAAGTTGTTGGTAGACACACAAATGTTCACAGTTCTATCCGACTCTCGTCTGTCAAGCTTAGAGAATGGCAACCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN dDENN uDENN

Protein Analysis

810

Amino Acids

90.26

Weight (kDa)

5.26

Isoelectric Point (pI)

49.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
uDENN	PF03456	183 - 260	3.9e-06	uDENN domain
DENN	PF02141	604 - 697	1.2e-21	DENN (AEX-3) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20320 AT2G20320
fragaria_vesca	FvH4_2g20280
malus_domestica	MD05G1186700.v1.1 MD10G1174800.v1.1
prunus_persica	Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1
pyrus_communis	pycom05g17090 pycom10g15050
rosa_chinensis	RchiOBHm_Chr6g0286081
rosa_laevigata	RLG00000012584
rosa_multiflora	Rmu_sc0023663.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182470
rosa_rugosa	Rorug06G0178800
rosa_samantha	Rh3BG272300 Rh6AG291200 Rh6BG294500 Rh6CG294100 Rh6DG286100
rosa_wichuraiana	Rw6G025090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	398
AccB1I	GGYRCC	1 cut(s)	151
AccB7I	CCANNNNNTGG	1 cut(s)	1412
AccI	GTMKAC	1 cut(s)	2364
AccII	CGCG	1 cut(s)	2168
AciI	CCGC	5 cut(s)	143, 172, 404, 1246, 1856
AclWI	GGATC	3 cut(s)	1736, 2069, 2109
AcoI	YGGCCR	2 cut(s)	126, 1342
AcsI	RAATTY	2 cut(s)	1090, 1723
AcuI	CTGAAG	4 cut(s)	60, 867, 1296, 1758
AcvI	CACGTG	1 cut(s)	1355
AdeI	CACNNNGTG	1 cut(s)	668
AfaI	GTAC	4 cut(s)	555, 1126, 1863, 2271
AfeI	AGCGCT	1 cut(s)	1782
AfiI	CCNNNNNNNGG	9 cut(s)	73, 161, 204, 579, 865, 1412, 1631, 1900, 1901
AflIII	ACRYGT	1 cut(s)	778
AgeI	ACCGGT	1 cut(s)	2340
AjnI	CCWGG	4 cut(s)	622, 1427, 1744, 1984
AjuI	GAANNNNNNNTTGG	2 cut(s)	1424, 1456
AleI	CACNNNNGTG	1 cut(s)	880
Alw21I	GWGCWC	1 cut(s)	2097
Alw26I	GTCTC	4 cut(s)	464, 1058, 1154, 2121
AlwI	GGATC	3 cut(s)	1736, 2069, 2109
AlwNI	CAGNNNCTG	1 cut(s)	2078
Ama87I	CYCGRG	1 cut(s)	572
Aor51HI	AGCGCT	1 cut(s)	1782
AoxI	GGCC	3 cut(s)	126, 800, 1342
ApeKI	GCWGC	7 cut(s)	443, 514, 1136, 1700, 1766, 1769, 2242
ApoI	RAATTY	2 cut(s)	1090, 1723
AseI	ATTAAT	1 cut(s)	644
AsiGI	ACCGGT	1 cut(s)	2340
Asp700I	GAANNNNTTC	3 cut(s)	792, 1273, 2043
AspLEI	GCGC	4 cut(s)	210, 960, 1783, 2170
AspS9I	GGNCC	4 cut(s)	174, 264, 524, 2338
AsuC2I	CCSGG	5 cut(s)	156, 280, 573, 574, 1202
AsuHPI	GGTGA	2 cut(s)	819, 2119
AsuNHI	GCTAGC	1 cut(s)	583
AvaI	CYCGRG	1 cut(s)	572
AvaII	GGWCC	4 cut(s)	174, 264, 524, 2338
AxyI	CCTNAGG	2 cut(s)	297, 549
BalI	TGGCCA	2 cut(s)	128, 1344
BanI	GGYRCC	1 cut(s)	151
BbrPI	CACGTG	1 cut(s)	1355
BbsI	GAAGAC	1 cut(s)	659
Bbv12I	GWGCWC	1 cut(s)	2097
BbvCI	CCTCAGC	1 cut(s)	1773
BbvI	GCAGC	7 cut(s)	455, 526, 1123, 1687, 1753, 1756, 2254
BccI	CCATC	3 cut(s)	252, 459, 667
BciT130I	CCWGG	4 cut(s)	624, 1429, 1746, 1986
BcnI	CCSGG	5 cut(s)	156, 280, 573, 574, 1202
BcoDI	GTCTC	4 cut(s)	464, 1058, 1154, 2121
BfaI	CTAG	5 cut(s)	584, 1218, 1482, 1566, 2331
BfmI	CTRYAG	6 cut(s)	512, 1137, 1589, 1667, 1917, 2049
BfoI	RGCGCY	2 cut(s)	961, 1784
BglII	AGATCT	2 cut(s)	2053, 2149
BisI	GCNGC	8 cut(s)	143, 444, 515, 1137, 1701, 1767, 1770, 2243
BlsI	GCNGC	8 cut(s)	144, 445, 516, 1138, 1702, 1768, 1771, 2244
BmcAI	AGTACT	1 cut(s)	1863
Bme1390I	CCNGG	9 cut(s)	156, 280, 573, 574, 624, 1202, 1429, 1746, 1986
Bme18I	GGWCC	4 cut(s)	174, 264, 524, 2338
BmeT110I	CYCGRG	1 cut(s)	572
BmgT120I	GGNCC	4 cut(s)	174, 264, 524, 2338
BmiI	GGNNCC	8 cut(s)	153, 176, 265, 372, 525, 1191, 1227, 1300
BmrFI	CCNGG	9 cut(s)	156, 280, 573, 574, 624, 1202, 1429, 1746, 1986
BmrI	ACTGGG	1 cut(s)	2009
BmsI	GCATC	7 cut(s)	13, 25, 579, 828, 1744, 1999, 2224
BmtI	GCTAGC	1 cut(s)	587
BmuI	ACTGGG	1 cut(s)	2009
BoxI	GACNNNNGTC	1 cut(s)	2397
BpiI	GAAGAC	1 cut(s)	659
BpmI	CTGGAG	5 cut(s)	513, 645, 1212, 1389, 1411
Bpu10I	CCTNAGC	2 cut(s)	1773, 2246
BpuEI	CTTGAG	2 cut(s)	722, 1163
BpuMI	CCSGG	5 cut(s)	156, 280, 573, 574, 1202
BsaAI	YACGTR	1 cut(s)	1355
BsaBI	GATNNNNATC	1 cut(s)	423
BsaI	GGTCTC	1 cut(s)	1058
BsaJI	CCNNGG	8 cut(s)	155, 438, 572, 878, 1200, 1705, 1745, 1985
BsaWI	WCCGGW	1 cut(s)	2340
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bsc4I	CCNNNNNNNGG	9 cut(s)	73, 161, 204, 579, 865, 1412, 1631, 1900, 1901
Bse118I	RCCGGY	1 cut(s)	2340
Bse1I	ACTGG	5 cut(s)	129, 322, 1678, 1872, 2015
Bse21I	CCTNAGG	2 cut(s)	297, 549
Bse8I	GATNNNNATC	1 cut(s)	423
BseBI	CCWGG	4 cut(s)	624, 1429, 1746, 1986
BseDI	CCNNGG	8 cut(s)	155, 438, 572, 878, 1200, 1705, 1745, 1985
BseGI	GGATG	6 cut(s)	28, 412, 1092, 1267, 1504, 2215
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	9 cut(s)	73, 161, 204, 579, 865, 1412, 1631, 1900, 1901
BseMII	CTCAG	7 cut(s)	75, 288, 563, 953, 1053, 1317, 1764
BseNI	ACTGG	5 cut(s)	129, 322, 1678, 1872, 2015
BseRI	GAGGAG	3 cut(s)	68, 101, 1067
BseXI	GCAGC	7 cut(s)	455, 526, 1123, 1687, 1753, 1756, 2254
BsgI	GTGCAG	2 cut(s)	858, 2261
Bsh1236I	CGCG	1 cut(s)	2168
BshFI	GGCC	3 cut(s)	128, 802, 1344
BshNI	GGYRCC	1 cut(s)	151
BshTI	ACCGGT	1 cut(s)	2340
BsiHKAI	GWGCWC	1 cut(s)	2097
BsiHKCI	CYCGRG	1 cut(s)	572
BsiSI	CCGG	5 cut(s)	155, 280, 573, 1202, 2341
BslFI	GGGAC	6 cut(s)	49, 277, 537, 995, 1042, 1183
BslI	CCNNNNNNNGG	9 cut(s)	73, 161, 204, 579, 865, 1412, 1631, 1900, 1901
BsmAI	GTCTC	4 cut(s)	464, 1058, 1154, 2121
BsmBI	CGTCTC	1 cut(s)	464
BsmFI	GGGAC	6 cut(s)	49, 277, 537, 995, 1042, 1183
BsmI	GAATGC	1 cut(s)	446
BsnI	GGCC	3 cut(s)	128, 802, 1344
Bso31I	GGTCTC	1 cut(s)	1058
BsoBI	CYCGRG	1 cut(s)	572
Bsp1286I	GDGCHC	1 cut(s)	2097
Bsp1407I	TGTACA	1 cut(s)	2269
Bsp143I	GATC	5 cut(s)	1741, 2053, 2074, 2101, 2149
BspACI	CCGC	5 cut(s)	143, 172, 404, 1246, 1856
BspANI	GGCC	3 cut(s)	128, 802, 1344
BspCNI	CTCAG	7 cut(s)	76, 289, 562, 954, 1054, 1316, 1765
BspFNI	CGCG	1 cut(s)	2168
BspLI	GGNNCC	8 cut(s)	153, 176, 265, 372, 525, 1191, 1227, 1300
BspMAI	CTGCAG	3 cut(s)	516, 1141, 2053
BspOI	GCTAGC	1 cut(s)	587
BspPI	GGATC	3 cut(s)	1736, 2069, 2109
BspQI	GCTCTTC	1 cut(s)	1620
BspT107I	GGYRCC	1 cut(s)	151
BspTNI	GGTCTC	1 cut(s)	1058
BsrFI	RCCGGY	1 cut(s)	2340
BsrGI	TGTACA	1 cut(s)	2269
BsrI	ACTGG	5 cut(s)	129, 322, 1678, 1872, 2015
BssAI	RCCGGY	1 cut(s)	2340
BssECI	CCNNGG	8 cut(s)	155, 438, 572, 878, 1200, 1705, 1745, 1985
BssMI	GATC	5 cut(s)	1741, 2053, 2074, 2101, 2149
BssT1I	CCWWGG	1 cut(s)	1705
Bst2UI	CCWGG	4 cut(s)	624, 1429, 1746, 1986
Bst6I	CTCTTC	6 cut(s)	45, 572, 837, 860, 1620, 1626
BstAPI	GCANNNNNTGC	2 cut(s)	752, 1853
BstAUI	TGTACA	1 cut(s)	2269
BstBAI	YACGTR	1 cut(s)	1355
BstC8I	GCNNGC	3 cut(s)	94, 285, 585
BstF5I	GGATG	6 cut(s)	28, 412, 1092, 1267, 1504, 2215
BstFNI	CGCG	1 cut(s)	2168
BstH2I	RGCGCY	2 cut(s)	961, 1784
BstHHI	GCGC	4 cut(s)	210, 960, 1783, 2170
BstKTI	GATC	5 cut(s)	1744, 2056, 2077, 2104, 2152
BstMAI	GTCTC	4 cut(s)	464, 1058, 1154, 2121
BstMBI	GATC	5 cut(s)	1741, 2053, 2074, 2101, 2149
BstNI	CCWGG	4 cut(s)	624, 1429, 1746, 1986
BstNSI	RCATGY	3 cut(s)	96, 782, 1492
BstPAI	GACNNNNGTC	1 cut(s)	2397
BstSCI	CCNGG	9 cut(s)	154, 278, 571, 572, 622, 1200, 1427, 1744, 1984
BstSFI	CTRYAG	6 cut(s)	512, 1137, 1589, 1667, 1917, 2049
BstUI	CGCG	1 cut(s)	2168
BstV1I	GCAGC	7 cut(s)	455, 526, 1123, 1687, 1753, 1756, 2254
BstV2I	GAAGAC	1 cut(s)	659
BstX2I	RGATCY	4 cut(s)	1741, 2053, 2074, 2149
BstXI	CCANNNNNNTGG	2 cut(s)	124, 1956
BstYI	RGATCY	4 cut(s)	1741, 2053, 2074, 2149
Bsu36I	CCTNAGG	2 cut(s)	297, 549
BsuRI	GGCC	3 cut(s)	128, 802, 1344
BtgZI	GCGATG	2 cut(s)	602, 1557
BtsCI	GGATG	6 cut(s)	28, 412, 1092, 1267, 1504, 2215
BtsIMutI	CAGTG	4 cut(s)	329, 1117, 1793, 1926
Cac8I	GCNNGC	3 cut(s)	94, 285, 585
CaiI	CAGNNNCTG	1 cut(s)	2078
CfoI	GCGC	4 cut(s)	210, 960, 1783, 2170
Cfr10I	RCCGGY	1 cut(s)	2340
Cfr13I	GGNCC	4 cut(s)	174, 264, 524, 2338
Cfr9I	CCCGGG	1 cut(s)	572
Csp6I	GTAC	4 cut(s)	554, 1125, 1862, 2270
CspAI	ACCGGT	1 cut(s)	2340
CviQI	GTAC	4 cut(s)	554, 1125, 1862, 2270
DpnI	GATC	5 cut(s)	1743, 2055, 2076, 2103, 2151
DpnII	GATC	5 cut(s)	1741, 2053, 2074, 2101, 2149
DraI	TTTAAA	1 cut(s)	562
DraIII	CACNNNGTG	1 cut(s)	668
EaeI	YGGCCR	2 cut(s)	126, 1342
Eam1104I	CTCTTC	6 cut(s)	45, 572, 837, 860, 1620, 1626
EarI	CTCTTC	6 cut(s)	45, 572, 837, 860, 1620, 1626
EciI	GGCGGA	1 cut(s)	187
Eco130I	CCWWGG	1 cut(s)	1705
Eco147I	AGGCCT	1 cut(s)	802
Eco31I	GGTCTC	1 cut(s)	1058
Eco32I	GATATC	1 cut(s)	1419
Eco47I	GGWCC	4 cut(s)	174, 264, 524, 2338
Eco47III	AGCGCT	1 cut(s)	1782
Eco57I	CTGAAG	4 cut(s)	60, 867, 1296, 1758
Eco72I	CACGTG	1 cut(s)	1355
Eco81I	CCTNAGG	2 cut(s)	297, 549
Eco88I	CYCGRG	1 cut(s)	572
EcoO109I	RGGNCCY	1 cut(s)	524
EcoRI	GAATTC	1 cut(s)	1090
EcoRII	CCWGG	4 cut(s)	622, 1427, 1744, 1984
EcoRV	GATATC	1 cut(s)	1419
EcoT14I	CCWWGG	1 cut(s)	1705
ErhI	CCWWGG	1 cut(s)	1705
Esp3I	CGTCTC	1 cut(s)	464
FaqI	GGGAC	6 cut(s)	49, 277, 537, 995, 1042, 1183
FauI	CCCGC	2 cut(s)	397, 1849
FblI	GTMKAC	1 cut(s)	2364
Fnu4HI	GCNGC	8 cut(s)	143, 444, 515, 1137, 1701, 1767, 1770, 2243
FokI	GGATG	6 cut(s)	35, 399, 1099, 1274, 1511, 2202
Fsp4HI	GCNGC	8 cut(s)	143, 444, 515, 1137, 1701, 1767, 1770, 2243
FspBI	CTAG	5 cut(s)	584, 1218, 1482, 1566, 2331
GlaI	GCGC	4 cut(s)	209, 959, 1782, 2169
GluI	GCNGC	8 cut(s)	143, 444, 515, 1137, 1701, 1767, 1770, 2243
GsuI	CTGGAG	5 cut(s)	513, 645, 1212, 1389, 1411
HaeII	RGCGCY	2 cut(s)	961, 1784
HaeIII	GGCC	3 cut(s)	128, 802, 1344
HapII	CCGG	5 cut(s)	155, 280, 573, 1202, 2341
HhaI	GCGC	4 cut(s)	210, 960, 1783, 2170
Hin6I	GCGC	4 cut(s)	208, 958, 1781, 2168
HinP1I	GCGC	4 cut(s)	208, 958, 1781, 2168
HincII	GTYRAC	2 cut(s)	1108, 2089
HindII	GTYRAC	2 cut(s)	1108, 2089
HindIII	AAGCTT	1 cut(s)	2407
HpaI	GTTAAC	1 cut(s)	2089
HpaII	CCGG	5 cut(s)	155, 280, 573, 1202, 2341
HphI	GGTGA	2 cut(s)	819, 2119
Hpy166II	GTNNAC	6 cut(s)	1108, 1800, 2089, 2270, 2365, 2379
Hpy8I	GTNNAC	6 cut(s)	1108, 1800, 2089, 2270, 2365, 2379
HpyAV	CCTTC	7 cut(s)	35, 241, 514, 842, 1023, 2032, 2189
HpyCH4IV	ACGT	2 cut(s)	1354, 2091
HpySE526I	ACGT	2 cut(s)	1354, 2091
HspAI	GCGC	4 cut(s)	208, 958, 1781, 2168
KspAI	GTTAAC	1 cut(s)	2089
Kzo9I	GATC	5 cut(s)	1741, 2053, 2074, 2101, 2149
LguI	GCTCTTC	1 cut(s)	1620
LmnI	GCTCC	5 cut(s)	370, 697, 955, 1231, 1444
Lsp1109I	GCAGC	7 cut(s)	455, 526, 1123, 1687, 1753, 1756, 2254
LweI	GCATC	7 cut(s)	13, 25, 579, 828, 1744, 1999, 2224
MaeI	CTAG	5 cut(s)	584, 1218, 1482, 1566, 2331
MaeII	ACGT	2 cut(s)	1354, 2091
MaeIII	GTNAC	6 cut(s)	668, 918, 1331, 1785, 2187, 2295
MalI	GATC	5 cut(s)	1743, 2055, 2076, 2103, 2151
MboI	GATC	5 cut(s)	1741, 2053, 2074, 2101, 2149
MfeI	CAATTG	1 cut(s)	1695
MflI	RGATCY	4 cut(s)	1741, 2053, 2074, 2149
MhlI	GDGCHC	1 cut(s)	2097
MlsI	TGGCCA	2 cut(s)	128, 1344
MluNI	TGGCCA	2 cut(s)	128, 1344
MlyI	GAGTC	7 cut(s)	649, 846, 973, 1064, 1079, 1369, 2387
MmeI	TCCRAC	3 cut(s)	765, 1675, 2415
Mox20I	TGGCCA	2 cut(s)	128, 1344
MroXI	GAANNNNTTC	3 cut(s)	792, 1273, 2043
MscI	TGGCCA	2 cut(s)	128, 1344
MslI	CAYNNNNRTG	4 cut(s)	880, 1338, 1954, 2372
Msp20I	TGGCCA	2 cut(s)	128, 1344
MspA1I	CMGCKG	1 cut(s)	1130
MspI	CCGG	5 cut(s)	155, 280, 573, 1202, 2341
MspR9I	CCNGG	9 cut(s)	156, 280, 573, 574, 624, 1202, 1429, 1746, 1986
MunI	CAATTG	1 cut(s)	1695
Mva1269I	GAATGC	1 cut(s)	446
MvaI	CCWGG	4 cut(s)	624, 1429, 1746, 1986
MvnI	CGCG	1 cut(s)	2168
NciI	CCSGG	5 cut(s)	156, 280, 573, 574, 1202
NdeII	GATC	5 cut(s)	1741, 2053, 2074, 2101, 2149
NheI	GCTAGC	1 cut(s)	583
NlaIV	GGNNCC	8 cut(s)	153, 176, 265, 372, 525, 1191, 1227, 1300
NmeAIII	GCCGAG	2 cut(s)	463, 1844
NmuCI	GTSAC	4 cut(s)	668, 1331, 1785, 2187
NspI	RCATGY	3 cut(s)	96, 782, 1492
OliI	CACNNNNGTG	1 cut(s)	880
PaeI	GCATGC	1 cut(s)	96
PceI	AGGCCT	1 cut(s)	802
PciI	ACATGT	1 cut(s)	778
PciSI	GCTCTTC	1 cut(s)	1620
PctI	GAATGC	1 cut(s)	446
PdmI	GAANNNNTTC	3 cut(s)	792, 1273, 2043
PfeI	GAWTC	6 cut(s)	275, 1274, 1432, 1463, 1730, 2321
PflFI	GACNNNGTC	2 cut(s)	1007, 1069
PflMI	CCANNNNNTGG	1 cut(s)	1412
PfoI	TCCNGGA	2 cut(s)	622, 1427
PinAI	ACCGGT	1 cut(s)	2340
PkrI	GCNGC	8 cut(s)	144, 445, 516, 1138, 1702, 1768, 1771, 2244
PleI	GAGTC	7 cut(s)	649, 846, 972, 1063, 1078, 1368, 2387
PmaCI	CACGTG	1 cut(s)	1355
PmlI	CACGTG	1 cut(s)	1355
PpsI	GAGTC	7 cut(s)	649, 846, 972, 1063, 1078, 1368, 2387
Ppu21I	YACGTR	1 cut(s)	1355
PpuMI	RGGWCCY	1 cut(s)	524
PscI	ACATGT	1 cut(s)	778
PshAI	GACNNNNGTC	1 cut(s)	2397
PshBI	ATTAAT	1 cut(s)	644
PsiI	TTATAA	1 cut(s)	398
Psp5II	RGGWCCY	1 cut(s)	524
Psp6I	CCWGG	4 cut(s)	622, 1427, 1744, 1984
PspCI	CACGTG	1 cut(s)	1355
PspGI	CCWGG	4 cut(s)	622, 1427, 1744, 1984
PspN4I	GGNNCC	8 cut(s)	153, 176, 265, 372, 525, 1191, 1227, 1300
PspPI	GGNCC	4 cut(s)	174, 264, 524, 2338
PspPPI	RGGWCCY	1 cut(s)	524
PsrI	GAACNNNNNNTAC	2 cut(s)	537, 569
PstI	CTGCAG	3 cut(s)	516, 1141, 2053
PstNI	CAGNNNCTG	1 cut(s)	2078
PsuI	RGATCY	4 cut(s)	1741, 2053, 2074, 2149
PsyI	GACNNNGTC	2 cut(s)	1007, 1069
PvuII	CAGCTG	1 cut(s)	1130
RsaI	GTAC	4 cut(s)	555, 1126, 1863, 2271
RsaNI	GTAC	4 cut(s)	554, 1125, 1862, 2270
RseI	CAYNNNNRTG	4 cut(s)	880, 1338, 1954, 2372
SapI	GCTCTTC	1 cut(s)	1620
SatI	GCNGC	8 cut(s)	143, 444, 515, 1137, 1701, 1767, 1770, 2243
Sau3AI	GATC	5 cut(s)	1741, 2053, 2074, 2101, 2149
Sau96I	GGNCC	4 cut(s)	174, 264, 524, 2338
ScaI	AGTACT	1 cut(s)	1863
SchI	GAGTC	7 cut(s)	649, 846, 973, 1064, 1079, 1369, 2387
ScrFI	CCNGG	9 cut(s)	156, 280, 573, 574, 624, 1202, 1429, 1746, 1986
SduI	GDGCHC	1 cut(s)	2097
SfaNI	GCATC	7 cut(s)	13, 25, 579, 828, 1744, 1999, 2224
SfcI	CTRYAG	6 cut(s)	512, 1137, 1589, 1667, 1917, 2049
SinI	GGWCC	4 cut(s)	174, 264, 524, 2338
SmaI	CCCGGG	1 cut(s)	574
SmiMI	CAYNNNNRTG	4 cut(s)	880, 1338, 1954, 2372
SmlI	CTYRAG	2 cut(s)	737, 1178
SmoI	CTYRAG	2 cut(s)	737, 1178
SphI	GCATGC	1 cut(s)	96
SseBI	AGGCCT	1 cut(s)	802
SsiI	CCGC	5 cut(s)	143, 172, 404, 1246, 1856
SspI	AATATT	1 cut(s)	540
SspMI	CTAG	5 cut(s)	584, 1218, 1482, 1566, 2331
StuI	AGGCCT	1 cut(s)	802
StyD4I	CCNGG	9 cut(s)	154, 278, 571, 572, 622, 1200, 1427, 1744, 1984
StyI	CCWWGG	1 cut(s)	1705
TaiI	ACGT	2 cut(s)	1357, 2094
TaqI	TCGA	4 cut(s)	967, 1687, 1728, 2193
TaqII	GACCGA	1 cut(s)	1082
TatI	WGTACW	2 cut(s)	1861, 2269
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	6 cut(s)	275, 1274, 1432, 1463, 1730, 2321
TscAI	CASTG	4 cut(s)	329, 1117, 1800, 1926
TseFI	GTSAC	4 cut(s)	668, 1331, 1785, 2187
TseI	GCWGC	7 cut(s)	443, 514, 1136, 1700, 1766, 1769, 2242
Tsp45I	GTSAC	4 cut(s)	668, 1331, 1785, 2187
TspGWI	ACGGA	2 cut(s)	488, 848
TspMI	CCCGGG	1 cut(s)	572
TspRI	CASTG	4 cut(s)	329, 1117, 1800, 1926
Tth111I	GACNNNGTC	2 cut(s)	1007, 1069
Van91I	CCANNNNNTGG	1 cut(s)	1412
VpaK11BI	GGWCC	4 cut(s)	174, 264, 524, 2338
VspI	ATTAAT	1 cut(s)	644
XapI	RAATTY	2 cut(s)	1090, 1723
XceI	RCATGY	3 cut(s)	96, 782, 1492
XmaI	CCCGGG	1 cut(s)	572
XmiI	GTMKAC	1 cut(s)	2364
XmnI	GAANNNNTTC	3 cut(s)	792, 1273, 2043
XspI	CTAG	5 cut(s)	584, 1218, 1482, 1566, 2331
ZrmI	AGTACT	1 cut(s)	1863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.