Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006052

Physical Location & Seq

Genomic Coordinates Reverse (-)

26562020 .. 26576189

Gene Structure 14170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG272300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGTATACTCCCTTGGTGCTGAAGCAGATGATGACAGGCTTCCGTTTCTTCTCAAGGAAGTTCAGGGTAAGGACATAACAGAGCTTATTGCCTCTGGAAGGGAGAAGTTGGCTTCTGAAGCTGCTCTTGATTTGGGATATATGATGAGCTTAGTGTTTGAAATGGATGCAAAGGAAGATGCTGAAGGACACGAAGAGGGGGGTTCGTCCCCTATTCAGGTTATATCTGAGGAGGCATGCACAGTGGCAGGAGAAGCCCCCAATAACTTGGCCAGTCCGAATATGCCGCCATTGGCACCGGGGAATGGGCATAGGCGGACCCAAAGTGATGTTTTGACCACCAAACACAGGCGCAGTCATAGCTTTCAGAGATTGAAAAACCAAATGCAGAAGGCTTGGAGATGGGGGACCAATCATGATTCCCGGCTGGCTTTCAATCCTGAGGTTTTGGCAAACCAAAAACGCCAGTGGTATCAGCTTCACTCCAAATCAAAGGTGTTCTTTTCTACTATTTGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN dDENN uDENN

Protein Analysis

173

Amino Acids

19.36

Weight (kDa)

6.07

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20320 AT2G20320
fragaria_vesca	FvH4_2g20280
malus_domestica	MD05G1186700.v1.1 MD10G1174800.v1.1
prunus_persica	Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1
pyrus_communis	pycom05g17090 pycom10g15050
rosa_chinensis	RchiOBHm_Chr6g0286081
rosa_laevigata	RLG00000012584
rosa_multiflora	Rmu_sc0023663.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182470
rosa_rugosa	Rorug06G0178800
rosa_samantha	Rh3BG272300 Rh6AG291200 Rh6BG294500 Rh6CG294100 Rh6DG286100
rosa_wichuraiana	Rw6G025090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	295
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	2 cut(s)	287, 316
AcoI	YGGCCR	1 cut(s)	270
AcuI	CTGAAG	3 cut(s)	42, 138, 204
AfiI	CCNNNNNNNGG	4 cut(s)	99, 217, 305, 348
AgsI	TTSAA	3 cut(s)	161, 376, 436
AluBI	AGCT	5 cut(s)	85, 122, 150, 363, 478
AluI	AGCT	5 cut(s)	85, 122, 150, 363, 478
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	354
AspS9I	GGNCC	2 cut(s)	318, 408
AsuC2I	CCSGG	2 cut(s)	300, 424
AvaII	GGWCC	2 cut(s)	318, 408
AxyI	CCTNAGG	1 cut(s)	441
BalI	TGGCCA	1 cut(s)	272
BanI	GGYRCC	1 cut(s)	295
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	1 cut(s)	396
BcnI	CCSGG	2 cut(s)	300, 424
BisI	GCNGC	2 cut(s)	123, 287
BlsI	GCNGC	2 cut(s)	124, 288
Bme1390I	CCNGG	2 cut(s)	300, 424
Bme18I	GGWCC	2 cut(s)	318, 408
BmgT120I	GGNCC	2 cut(s)	318, 408
BmiI	GGNNCC	3 cut(s)	297, 320, 409
BmrFI	CCNGG	2 cut(s)	300, 424
BmsI	GCATC	2 cut(s)	157, 169
BpuEI	CTTGAG	1 cut(s)	38
BpuMI	CCSGG	2 cut(s)	300, 424
BsaJI	CCNNGG	2 cut(s)	13, 299
Bsc4I	CCNNNNNNNGG	4 cut(s)	99, 217, 305, 348
Bse1I	ACTGG	2 cut(s)	273, 466
Bse21I	CCTNAGG	1 cut(s)	441
BseDI	CCNNGG	2 cut(s)	13, 299
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	4 cut(s)	99, 217, 305, 348
BseMII	CTCAG	2 cut(s)	219, 432
BseNI	ACTGG	2 cut(s)	273, 466
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	109
BshFI	GGCC	1 cut(s)	272
BshNI	GGYRCC	1 cut(s)	295
BsiSI	CCGG	2 cut(s)	299, 424
BslFI	GGGAC	2 cut(s)	193, 421
BslI	CCNNNNNNNGG	4 cut(s)	99, 217, 305, 348
BsmFI	GGGAC	2 cut(s)	193, 421
BsnI	GGCC	1 cut(s)	272
BspACI	CCGC	2 cut(s)	287, 316
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	2 cut(s)	220, 433
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	3 cut(s)	297, 320, 409
BspT107I	GGYRCC	1 cut(s)	295
BsrI	ACTGG	2 cut(s)	273, 466
BssECI	CCNNGG	2 cut(s)	13, 299
BssNAI	GTATAC	1 cut(s)	7
BssT1I	CCWWGG	1 cut(s)	13
Bst1107I	GTATAC	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	238, 429
BstDEI	CTNAG	3 cut(s)	151, 228, 441
BstENI	CCTNNNNNAGG	1 cut(s)	97
BstF5I	GGATG	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	354
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 254, 360
BstNSI	RCATGY	1 cut(s)	240
BstSCI	CCNGG	2 cut(s)	298, 422
BstV1I	GCAGC	1 cut(s)	109
BstXI	CCANNNNNNTGG	1 cut(s)	268
BstZ17I	GTATAC	1 cut(s)	7
Bsu36I	CCTNAGG	1 cut(s)	441
BsuRI	GGCC	1 cut(s)	272
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	249, 473
Cac8I	GCNNGC	2 cut(s)	238, 429
CciI	TCATGA	1 cut(s)	415
CfoI	GCGC	1 cut(s)	354
Cfr13I	GGNCC	2 cut(s)	318, 408
CviAII	CATG	2 cut(s)	237, 416
DdeI	CTNAG	3 cut(s)	151, 228, 441
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
EciI	GGCGGA	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	13
Eco47I	GGWCC	2 cut(s)	318, 408
Eco57I	CTGAAG	3 cut(s)	42, 138, 204
Eco81I	CCTNAGG	1 cut(s)	441
EcoNI	CCTNNNNNAGG	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	13
FaeI	CATG	2 cut(s)	240, 419
FalI	AAGNNNNNCTT	4 cut(s)	111, 143, 485, 517
FaqI	GGGAC	2 cut(s)	193, 421
FatI	CATG	2 cut(s)	236, 415
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	2 cut(s)	123, 287
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	2 cut(s)	123, 287
GlaI	GCGC	1 cut(s)	353
GluI	GCNGC	2 cut(s)	123, 287
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	2 cut(s)	299, 424
HhaI	GCGC	1 cut(s)	354
Hin1II	CATG	2 cut(s)	240, 419
Hin6I	GCGC	1 cut(s)	352
HinP1I	GCGC	1 cut(s)	352
HinfI	GANTC	1 cut(s)	419
HpaII	CCGG	2 cut(s)	299, 424
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	4 cut(s)	118, 229, 279, 369
Hpy188III	TCNNGA	4 cut(s)	96, 128, 416, 440
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	3 cut(s)	93, 179, 385
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4V	TGCA	4 cut(s)	170, 240, 388, 516
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 254, 360
HpyF3I	CTNAG	3 cut(s)	151, 228, 441
Hsp92II	CATG	2 cut(s)	240, 419
HspAI	GCGC	1 cut(s)	352
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	2 cut(s)	157, 169
MboII	GAAGA	3 cut(s)	41, 188, 206
MlsI	TGGCCA	1 cut(s)	272
MluNI	TGGCCA	1 cut(s)	272
MnlI	CCTC	5 cut(s)	103, 190, 223, 226, 436
Mox20I	TGGCCA	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	272
Msp20I	TGGCCA	1 cut(s)	272
MspI	CCGG	2 cut(s)	299, 424
MspR9I	CCNGG	2 cut(s)	300, 424
MwoI	GCNNNNNNNGC	3 cut(s)	119, 254, 360
NciI	CCSGG	2 cut(s)	300, 424
NlaIII	CATG	2 cut(s)	240, 419
NlaIV	GGNNCC	3 cut(s)	297, 320, 409
NspI	RCATGY	1 cut(s)	240
PaeI	GCATGC	1 cut(s)	240
PagI	TCATGA	1 cut(s)	415
PfeI	GAWTC	1 cut(s)	419
PkrI	GCNGC	2 cut(s)	124, 288
PspN4I	GGNNCC	3 cut(s)	297, 320, 409
PspPI	GGNCC	2 cut(s)	318, 408
SatI	GCNGC	2 cut(s)	123, 287
Sau96I	GGNCC	2 cut(s)	318, 408
ScrFI	CCNGG	2 cut(s)	300, 424
SetI	ASST	8 cut(s)	87, 124, 152, 222, 365, 447, 480, 498
SfaNI	GCATC	2 cut(s)	157, 169
SinI	GGWCC	2 cut(s)	318, 408
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
SphI	GCATGC	1 cut(s)	240
SsiI	CCGC	2 cut(s)	287, 316
StyD4I	CCNGG	2 cut(s)	298, 422
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	1 cut(s)	244
TauI	GCSGC	1 cut(s)	289
TfiI	GAWTC	1 cut(s)	419
TscAI	CASTG	2 cut(s)	249, 473
TseI	GCWGC	1 cut(s)	122
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	2 cut(s)	249, 473
VpaK11BI	GGWCC	2 cut(s)	318, 408
XagI	CCTNNNNNAGG	1 cut(s)	97
XceI	RCATGY	1 cut(s)	240
XmiI	GTMKAC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.