Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023663.1

Orthogroup ID

OG0006052

Physical Location & Seq

Genomic Coordinates Forward (+)

1151 .. 2289

Gene Structure 1139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023663.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atgagcttagtgtttgaaatggatgcaaaagaagatgctgaaggacacgaagaagggtgttcgtcccctattcaggttatatctgaggaggcatgcacagtggcaggagaagcccccaataacttggccagtccgaatatgccgccattggcaccggggaatgggcataggcggacccaaagtgatgttttgaccaccaaacaaaggcgcagtcatagctttcagagattgaaaaaccaaatgcagaaggcttggagatgggggaccaatcatgattcccggctggctttcaatcctgaggttttggcaaaccaaaaacgccagtggtatcagcttcactccaaatcaaagggtcatgtaaattatcaggagccaacttcactctttgagcattttataattgcggggcttcatccagatactaatcttaaaaatgccgaggcagcattcattaaaagaaagagatgggagacggacatgataagctatggaattaccgaccttaaattactgcagcagaagggacctccagccccaatattagaacctcaggttgaatgcatgactgcttatgaagcttcctgcaaacctctttcctgttttgtttttggtgtaaaaatctattttctattttcaacagcatatatgaatgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DENN dDENN uDENN

Protein Analysis

218

Amino Acids

24.74

Weight (kDa)

7.08

Isoelectric Point (pI)

58.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006052)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20320 AT2G20320
fragaria_vesca	FvH4_2g20280
malus_domestica	MD05G1186700.v1.1 MD10G1174800.v1.1
prunus_persica	Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1 Prupe.8G213500_v2.0.a1
pyrus_communis	pycom05g17090 pycom10g15050
rosa_chinensis	RchiOBHm_Chr6g0286081
rosa_laevigata	RLG00000012584
rosa_multiflora	Rmu_sc0023663.1_g000001
rosa_roxburghii	Rroxscaffold_7G00182470
rosa_rugosa	Rorug06G0178800
rosa_samantha	Rh3BG272300 Rh6AG291200 Rh6BG294500 Rh6CG294100 Rh6DG286100
rosa_wichuraiana	Rw6G025090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	398
AccB1I	GGYRCC	1 cut(s)	151
AciI	CCGC	3 cut(s)	143, 172, 404
AcoI	YGGCCR	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	60
AfiI	CCNNNNNNNGG	3 cut(s)	73, 161, 204
AgsI	TTSAA	5 cut(s)	17, 232, 292, 557, 636
AluBI	AGCT	5 cut(s)	6, 219, 334, 486, 578
AluI	AGCT	5 cut(s)	6, 219, 334, 486, 578
Alw26I	GTCTC	1 cut(s)	464
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	443, 514
ArsI	GACNNNNNNTTYG	2 cut(s)	196, 228
AspLEI	GCGC	1 cut(s)	210
AspS9I	GGNCC	3 cut(s)	174, 264, 524
AsuC2I	CCSGG	2 cut(s)	156, 280
AvaII	GGWCC	3 cut(s)	174, 264, 524
AxyI	CCTNAGG	2 cut(s)	297, 549
BalI	TGGCCA	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	455, 526
BccI	CCATC	2 cut(s)	252, 459
BcnI	CCSGG	2 cut(s)	156, 280
BcoDI	GTCTC	1 cut(s)	464
BfmI	CTRYAG	1 cut(s)	512
BisI	GCNGC	3 cut(s)	143, 444, 515
BlsI	GCNGC	3 cut(s)	144, 445, 516
Bme1390I	CCNGG	2 cut(s)	156, 280
Bme18I	GGWCC	3 cut(s)	174, 264, 524
BmgT120I	GGNCC	3 cut(s)	174, 264, 524
BmiI	GGNNCC	5 cut(s)	153, 176, 265, 372, 525
BmrFI	CCNGG	2 cut(s)	156, 280
BmsI	GCATC	2 cut(s)	13, 25
BpmI	CTGGAG	1 cut(s)	513
BpuMI	CCSGG	2 cut(s)	156, 280
BsaBI	GATNNNNATC	1 cut(s)	423
BsaJI	CCNNGG	2 cut(s)	155, 438
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 161, 204
Bse1I	ACTGG	2 cut(s)	129, 322
Bse21I	CCTNAGG	2 cut(s)	297, 549
Bse8I	GATNNNNATC	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	155, 438
BseGI	GGATG	2 cut(s)	28, 412
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	3 cut(s)	73, 161, 204
BseMII	CTCAG	3 cut(s)	75, 288, 563
BseNI	ACTGG	2 cut(s)	129, 322
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	455, 526
BshFI	GGCC	1 cut(s)	128
BshNI	GGYRCC	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	155, 280
BslFI	GGGAC	3 cut(s)	49, 277, 537
BslI	CCNNNNNNNGG	3 cut(s)	73, 161, 204
BsmAI	GTCTC	1 cut(s)	464
BsmBI	CGTCTC	1 cut(s)	464
BsmFI	GGGAC	3 cut(s)	49, 277, 537
BsmI	GAATGC	2 cut(s)	446, 563
BsnI	GGCC	1 cut(s)	128
BspACI	CCGC	3 cut(s)	143, 172, 404
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	3 cut(s)	76, 289, 562
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	5 cut(s)	153, 176, 265, 372, 525
BspMAI	CTGCAG	1 cut(s)	516
BspT107I	GGYRCC	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	129, 322
BssECI	CCNNGG	2 cut(s)	155, 438
Bst4CI	ACNGT	1 cut(s)	100
BstC8I	GCNNGC	2 cut(s)	94, 285
BstDEI	CTNAG	4 cut(s)	7, 84, 297, 549
BstF5I	GGATG	2 cut(s)	28, 412
BstHHI	GCGC	1 cut(s)	210
BstMAI	GTCTC	1 cut(s)	464
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 216, 443, 575
BstNSI	RCATGY	1 cut(s)	96
BstSCI	CCNGG	2 cut(s)	154, 278
BstSFI	CTRYAG	1 cut(s)	512
BstV1I	GCAGC	2 cut(s)	455, 526
BstXI	CCANNNNNNTGG	1 cut(s)	124
Bsu36I	CCTNAGG	2 cut(s)	297, 549
BsuRI	GGCC	1 cut(s)	128
BtsCI	GGATG	2 cut(s)	28, 412
BtsIMutI	CAGTG	2 cut(s)	105, 329
Cac8I	GCNNGC	2 cut(s)	94, 285
CciI	TCATGA	1 cut(s)	271
CfoI	GCGC	1 cut(s)	210
Cfr13I	GGNCC	3 cut(s)	174, 264, 524
CviAII	CATG	5 cut(s)	93, 272, 356, 478, 562
DdeI	CTNAG	4 cut(s)	7, 84, 297, 549
EaeI	YGGCCR	1 cut(s)	126
EciI	GGCGGA	1 cut(s)	187
Eco47I	GGWCC	3 cut(s)	174, 264, 524
Eco57I	CTGAAG	1 cut(s)	60
Eco81I	CCTNAGG	2 cut(s)	297, 549
EcoO109I	RGGNCCY	1 cut(s)	524
EcoT22I	ATGCAT	1 cut(s)	563
Esp3I	CGTCTC	1 cut(s)	464
FaeI	CATG	5 cut(s)	96, 275, 359, 481, 565
FaqI	GGGAC	3 cut(s)	49, 277, 537
FatI	CATG	5 cut(s)	92, 271, 355, 477, 561
FauI	CCCGC	1 cut(s)	397
Fnu4HI	GCNGC	3 cut(s)	143, 444, 515
FokI	GGATG	2 cut(s)	35, 399
Fsp4HI	GCNGC	3 cut(s)	143, 444, 515
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	3 cut(s)	143, 444, 515
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	2 cut(s)	155, 280
HhaI	GCGC	1 cut(s)	210
Hin1II	CATG	5 cut(s)	96, 275, 359, 481, 565
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HindIII	AAGCTT	1 cut(s)	576
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	2 cut(s)	155, 280
Hpy188I	TCNGA	3 cut(s)	85, 135, 225
Hpy188III	TCNNGA	4 cut(s)	272, 296, 368, 416
HpyAV	CCTTC	4 cut(s)	35, 47, 241, 514
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	6 cut(s)	26, 96, 244, 514, 561, 585
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 216, 443, 575
HpyF3I	CTNAG	4 cut(s)	7, 84, 297, 549
Hsp92II	CATG	5 cut(s)	96, 275, 359, 481, 565
HspAI	GCGC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	2 cut(s)	455, 526
LweI	GCATC	2 cut(s)	13, 25
MboII	GAAGA	2 cut(s)	44, 62
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	4 cut(s)	361, 399, 492, 506
MluNI	TGGCCA	1 cut(s)	128
MnlI	CCTC	7 cut(s)	79, 82, 292, 433, 537, 558, 600
Mox20I	TGGCCA	1 cut(s)	128
Mph1103I	ATGCAT	1 cut(s)	563
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	3 cut(s)	429, 453, 504
Msp20I	TGGCCA	1 cut(s)	128
MspI	CCGG	2 cut(s)	155, 280
MspR9I	CCNGG	2 cut(s)	156, 280
Mva1269I	GAATGC	2 cut(s)	446, 563
MwoI	GCNNNNNNNGC	4 cut(s)	110, 216, 443, 575
NciI	CCSGG	2 cut(s)	156, 280
NlaIII	CATG	5 cut(s)	96, 275, 359, 481, 565
NlaIV	GGNNCC	5 cut(s)	153, 176, 265, 372, 525
NmeAIII	GCCGAG	1 cut(s)	463
NsiI	ATGCAT	1 cut(s)	563
NspI	RCATGY	1 cut(s)	96
PaeI	GCATGC	1 cut(s)	96
PagI	TCATGA	1 cut(s)	271
PctI	GAATGC	2 cut(s)	446, 563
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	3 cut(s)	144, 445, 516
PpuMI	RGGWCCY	1 cut(s)	524
PsiI	TTATAA	1 cut(s)	398
Psp5II	RGGWCCY	1 cut(s)	524
PspN4I	GGNNCC	5 cut(s)	153, 176, 265, 372, 525
PspPI	GGNCC	3 cut(s)	174, 264, 524
PspPPI	RGGWCCY	1 cut(s)	524
PstI	CTGCAG	1 cut(s)	516
SaqAI	TTAA	3 cut(s)	429, 453, 504
SatI	GCNGC	3 cut(s)	143, 444, 515
Sau96I	GGNCC	3 cut(s)	174, 264, 524
ScrFI	CCNGG	2 cut(s)	156, 280
SfaNI	GCATC	2 cut(s)	13, 25
SfcI	CTRYAG	1 cut(s)	512
SinI	GGWCC	3 cut(s)	174, 264, 524
SphI	GCATGC	1 cut(s)	96
Sse9I	AATT	4 cut(s)	361, 399, 492, 506
SsiI	CCGC	3 cut(s)	143, 172, 404
SspI	AATATT	1 cut(s)	540
StyD4I	CCNGG	2 cut(s)	154, 278
TaaI	ACNGT	1 cut(s)	100
TasI	AATT	4 cut(s)	361, 399, 492, 506
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	3 cut(s)	429, 453, 504
Tru9I	TTAA	3 cut(s)	429, 453, 504
TscAI	CASTG	2 cut(s)	105, 329
TseI	GCWGC	2 cut(s)	443, 514
TspDTI	ATGAA	3 cut(s)	401, 439, 588
TspGWI	ACGGA	1 cut(s)	488
TspRI	CASTG	2 cut(s)	105, 329
VpaK11BI	GGWCC	3 cut(s)	174, 264, 524
XceI	RCATGY	1 cut(s)	96
Zsp2I	ATGCAT	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.