Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010526

Physical Location & Seq

Genomic Coordinates Forward (+)

17110950 .. 17112652

Gene Structure 1703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g20360.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTATCCTAAGGTGAGAGTGAGGGTACATCAACAAGAAAATCATATTCTTTCACAAAATGATCACAGAAGAGTACCAGAAACAAAAGTCTCTGATGAATCTCCATCTATACCAGTGAAGGAGATACAAGGATGTTCTCTACCATTGAAACCCAAAATCATGAAGGCTTCTGTGCCAAAGGTACCAGCAGGGCTAGGACAGTCACTTTCTTCATCCAAAGTAGATAAGAGCAGACATCTTGGGAAGCAGGATGCAAAACCAGATGTAAGAGCTTGTTCTTCAGTACCGCTGCGTCCTCGTGCAGTCTTATCTAGTCCTGACAATGATGGGATGATTGGACTAGTAAACAAACTATTTGATAAAACACCTTCTGCTGTCAAGGTGCACAAGGAGAGGGTACTTGCTTCCCAAAGGCAACAGAGAAAGGCATCCCCGAGTCCTATGAGCATGACCAAAGGCTCCAATAGAGCAGTGTCCACCAAGACTGGTCTTGTGCAAAGTAAACTGCAAAAGAACATGAAAGGAAAACAACAGCAAGCAAGTGCTCGAATAGGGAAATCAAGTTTCACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

20.89

Weight (kDa)

10.64

Isoelectric Point (pI)

63.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20360 FvH4_2g20360 FvH4_2g20360 FvH4_2g20360 FvH4_2g20360
malus_domestica	MD00G1060200.v1.1
prunus_persica	Prupe.8G216000_v2.0.a1
pyrus_communis	pycom10g15280
rosa_chinensis	RchiOBHm_Chr6g0286731
rosa_laevigata	RLG00000012547
rosa_multiflora	Rmu_sc0007546.1_g000009
rosa_roxburghii	Rroxscaffold_7G00182060
rosa_rugosa	Rorug06G0182400 Rorug06G0182500 Rorug06G0182600 Rorug06G0182700
rosa_samantha	Rh6AG295100 Rh6BG299000 Rh6CG299000 Rh6DG290900
rosa_wichuraiana	Rw6G025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	181
AccB1I	GGYRCC	1 cut(s)	181
AciI	CCGC	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	5 cut(s)	27, 75, 183, 285, 399
AgsI	TTSAA	1 cut(s)	148
AhlI	ACTAGT	1 cut(s)	340
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
Alw21I	GWGCWC	2 cut(s)	387, 547
Alw26I	GTCTC	1 cut(s)	94
Alw44I	GTGCAC	1 cut(s)	383
Ama87I	CYCGRG	1 cut(s)	433
ApaLI	GTGCAC	1 cut(s)	383
ApeKI	GCWGC	1 cut(s)	289
Asp718I	GGTACC	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	25
AvaI	CYCGRG	1 cut(s)	433
AxyI	CCTNAGG	1 cut(s)	9
BaeGI	GKGCMC	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	181
BauI	CACGAG	1 cut(s)	297
Bbv12I	GWGCWC	2 cut(s)	387, 547
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	2 cut(s)	112, 320
BciVI	GTATCC	1 cut(s)	15
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	94
BcuI	ACTAGT	1 cut(s)	340
BfaI	CTAG	3 cut(s)	194, 312, 341
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	291
BmeT110I	CYCGRG	1 cut(s)	433
BmiI	GGNNCC	2 cut(s)	183, 460
BmsI	GCATC	2 cut(s)	241, 437
Bse1I	ACTGG	2 cut(s)	113, 490
Bse21I	CCTNAGG	1 cut(s)	9
BseGI	GGATG	5 cut(s)	137, 212, 256, 336, 428
BseNI	ACTGG	2 cut(s)	113, 490
BseSI	GKGCMC	1 cut(s)	387
BseXI	GCAGC	1 cut(s)	276
BsgI	GTGCAG	1 cut(s)	321
BshNI	GGYRCC	1 cut(s)	181
BsiHKAI	GWGCWC	2 cut(s)	387, 547
BsiHKCI	CYCGRG	1 cut(s)	433
BsmAI	GTCTC	1 cut(s)	94
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	2 cut(s)	387, 547
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	1 cut(s)	287
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	183, 460
BspT107I	GGYRCC	1 cut(s)	181
BsrI	ACTGG	2 cut(s)	113, 490
BssMI	GATC	1 cut(s)	61
BssSI	CACGAG	1 cut(s)	297
Bst2BI	CACGAG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	201
Bst6I	CTCTTC	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	1 cut(s)	9
BstF5I	GGATG	5 cut(s)	137, 212, 256, 336, 428
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	61
BstSLI	GKGCMC	1 cut(s)	387
BstV1I	GCAGC	1 cut(s)	276
Bsu36I	CCTNAGG	1 cut(s)	9
BsuI	GTATCC	1 cut(s)	15
BtsCI	GGATG	5 cut(s)	137, 212, 256, 336, 428
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	2 cut(s)	120, 477
Cac8I	GCNNGC	1 cut(s)	537
CciI	TCATGA	1 cut(s)	159
CseI	GACGC	1 cut(s)	281
Csp6I	GTAC	5 cut(s)	26, 74, 182, 284, 398
CviAII	CATG	3 cut(s)	160, 448, 517
CviJI	RGCY	4 cut(s)	167, 193, 272, 459
CviKI_1	RGCY	4 cut(s)	167, 193, 272, 459
CviQI	GTAC	5 cut(s)	26, 74, 182, 284, 398
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	264
Eco81I	CCTNAGG	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	433
FaeI	CATG	3 cut(s)	163, 451, 520
FaiI	YATR	6 cut(s)	45, 110, 161, 443, 449, 518
FatI	CATG	3 cut(s)	159, 447, 516
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	290
FokI	GGATG	5 cut(s)	144, 199, 263, 343, 415
Fsp4HI	GCNGC	1 cut(s)	290
FspBI	CTAG	3 cut(s)	194, 312, 341
GluI	GCNGC	1 cut(s)	290
HgaI	GACGC	1 cut(s)	281
Hin1II	CATG	3 cut(s)	163, 451, 520
HinfI	GANTC	2 cut(s)	98, 436
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	4 cut(s)	346, 385, 477, 503
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	2 cut(s)	160, 317
Hpy8I	GTNNAC	4 cut(s)	346, 385, 477, 503
HpyAV	CCTTC	3 cut(s)	112, 157, 378
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4V	TGCA	5 cut(s)	254, 302, 385, 496, 508
HpyF3I	CTNAG	1 cut(s)	9
Hsp92II	CATG	3 cut(s)	163, 451, 520
KpnI	GGTACC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	464
LpnPI	CCDG	8 cut(s)	90, 126, 174, 198, 233, 273, 330, 471
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	2 cut(s)	241, 437
MaeI	CTAG	3 cut(s)	194, 312, 341
MaeIII	GTNAC	1 cut(s)	201
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	3 cut(s)	81, 201, 270
MhlI	GDGCHC	2 cut(s)	387, 547
MlyI	GAGTC	1 cut(s)	445
MnlI	CCTC	3 cut(s)	15, 306, 387
MspA1I	CMGCKG	1 cut(s)	289
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	3 cut(s)	163, 451, 520
NlaIV	GGNNCC	2 cut(s)	183, 460
NmuCI	GTSAC	1 cut(s)	201
PagI	TCATGA	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	291
PleI	GAGTC	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	444
PspN4I	GGNNCC	2 cut(s)	183, 460
RsaI	GTAC	5 cut(s)	27, 75, 183, 285, 399
RsaNI	GTAC	5 cut(s)	26, 74, 182, 284, 398
SatI	GCNGC	1 cut(s)	290
Sau3AI	GATC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	445
SduI	GDGCHC	2 cut(s)	387, 547
SetI	ASST	5 cut(s)	15, 183, 274, 370, 384
SfaNI	GCATC	2 cut(s)	241, 437
SpeI	ACTAGT	1 cut(s)	340
SsiI	CCGC	1 cut(s)	287
SspMI	CTAG	3 cut(s)	194, 312, 341
TaaI	ACNGT	1 cut(s)	201
TaqI	TCGA	1 cut(s)	547
TfiI	GAWTC	1 cut(s)	98
TscAI	CASTG	2 cut(s)	120, 477
TseFI	GTSAC	1 cut(s)	201
TseI	GCWGC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	201
TspDTI	ATGAA	4 cut(s)	111, 176, 201, 533
TspRI	CASTG	2 cut(s)	120, 477
VneI	GTGCAC	1 cut(s)	383
XspI	CTAG	3 cut(s)	194, 312, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.