Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010526

Physical Location & Seq

Genomic Coordinates Reverse (-)

52856217 .. 52857561

Gene Structure 1345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG299000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGACAGAAGAATCGATTCTCCTTGGTTTTCAAGTCAAGATACATGGAGGAGGTTCCCTGACATTATTCATTTTATCTGGTACTCGTTACTTCTCCCAGACTCAAAACACAAATTTGAGTATAAAATTATGCTTCAAAAGCATGTTCTCCAAGGAACTGAGAAGAGCACCAAAGTCATTCGAATTTGAAAACAGACGACAATCGCAAATGTATCCTAAGGTGAGAGTGAGGGTGCATCAACAAGAAAATTATATTCCTCCACAAAATGATCACAAGAGAGTACCGGTGACGAAGGTCTCTGATGAATCTCTATCTATACCAGTGAAGGTGACTCAAGGCTGTTCTCTACCATTGAAACCCAGAATCATGAAGGCTTCTGTACCTAAGGTACCAGCAGGACAGCCACTTTCTTCATCCAAAGAGAAGAGCAGACATCTTGACAAGGATGCAAAACCAGATGTTAGAACTTGTTCTGCAGTACAGCCGCGTCCTCGTGCAGTCTTATCTAGTCCTGACAATGATGGGATGATTGGACTAGTAAACAAGCTAATTGATAAGCAACCTTCTGCTTTCAAGGTGCATAACACAAAGGAGAGGGTACCTGCTGCCCAAAGGCAACAGAGTAAGACATCCCCAAGTCCTATGGGCAGGACCAAAGGCTCCAATAGAGCAGTGTCTAACAAGACTGGTCTTGTGCAAAGTAAAGTGCAAAAGACCATGATTGGAAAACAGCAGCAAGCAAGTGTTGGAATAGGGAAATCAAGATTCACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

258

Amino Acids

28.67

Weight (kDa)

10.55

Isoelectric Point (pI)

50.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20360 FvH4_2g20360 FvH4_2g20360 FvH4_2g20360 FvH4_2g20360
malus_domestica	MD00G1060200.v1.1
prunus_persica	Prupe.8G216000_v2.0.a1
pyrus_communis	pycom10g15280
rosa_chinensis	RchiOBHm_Chr6g0286731
rosa_laevigata	RLG00000012547
rosa_multiflora	Rmu_sc0007546.1_g000009
rosa_roxburghii	Rroxscaffold_7G00182060
rosa_rugosa	Rorug06G0182400 Rorug06G0182500 Rorug06G0182600 Rorug06G0182700
rosa_samantha	Rh6AG295100 Rh6BG299000 Rh6CG299000 Rh6DG290900
rosa_wichuraiana	Rw6G025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	610
Acc65I	GGTACC	2 cut(s)	388, 598
AccB1I	GGYRCC	2 cut(s)	388, 598
AccII	CGCG	1 cut(s)	487
AciI	CCGC	1 cut(s)	485
AcsI	RAATTY	2 cut(s)	112, 182
AfaI	GTAC	6 cut(s)	82, 282, 381, 390, 480, 600
AgeI	ACCGGT	1 cut(s)	283
AgsI	TTSAA	5 cut(s)	32, 136, 188, 355, 574
AhlI	ACTAGT	1 cut(s)	535
AluBI	AGCT	1 cut(s)	547
AluI	AGCT	1 cut(s)	547
Alw21I	GWGCWC	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	301
ApeKI	GCWGC	2 cut(s)	605, 733
ApoI	RAATTY	2 cut(s)	112, 182
AsiGI	ACCGGT	1 cut(s)	283
Asp700I	GAANNNNTTC	2 cut(s)	15, 469
Asp718I	GGTACC	2 cut(s)	388, 598
AspS9I	GGNCC	1 cut(s)	651
AsuHPI	GGTGA	3 cut(s)	232, 298, 340
AsuII	TTCGAA	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	651
AxyI	CCTNAGG	2 cut(s)	216, 384
BanI	GGYRCC	2 cut(s)	388, 598
BauI	CACGAG	1 cut(s)	492
Bbv12I	GWGCWC	1 cut(s)	169
BbvI	GCAGC	2 cut(s)	592, 745
BccI	CCATC	1 cut(s)	515
BciVI	GTATCC	1 cut(s)	222
BclI	TGATCA	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	301
BcuI	ACTAGT	1 cut(s)	535
BfaI	CTAG	2 cut(s)	507, 536
BfmI	CTRYAG	1 cut(s)	474
BfuAI	ACCTGC	1 cut(s)	610
BfuI	GTATCC	1 cut(s)	222
BisI	GCNGC	3 cut(s)	485, 606, 734
BlsI	GCNGC	3 cut(s)	486, 607, 735
Bme18I	GGWCC	1 cut(s)	651
BmgT120I	GGNCC	1 cut(s)	651
BmiI	GGNNCC	4 cut(s)	55, 390, 600, 661
BmsI	GCATC	2 cut(s)	244, 436
BoxI	GACNNNNGTC	1 cut(s)	293
Bpu14I	TTCGAA	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	318
Bsa29I	ATCGAT	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	22, 150
BsaWI	WCCGGW	1 cut(s)	283
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	2 cut(s)	320, 691
Bse21I	CCTNAGG	2 cut(s)	216, 384
BseCI	ATCGAT	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	22, 150
BseGI	GGATG	4 cut(s)	413, 451, 531, 629
BseMII	CTCAG	1 cut(s)	149
BseNI	ACTGG	2 cut(s)	320, 691
BseRI	GAGGAG	1 cut(s)	63
BseXI	GCAGC	2 cut(s)	592, 745
BsgI	GTGCAG	1 cut(s)	516
Bsh1236I	CGCG	1 cut(s)	487
BshNI	GGYRCC	2 cut(s)	388, 598
BshTI	ACCGGT	1 cut(s)	283
BshVI	ATCGAT	1 cut(s)	14
BsiHKAI	GWGCWC	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	301
Bso31I	GGTCTC	1 cut(s)	301
Bsp119I	TTCGAA	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	268
BspACI	CCGC	1 cut(s)	485
BspCNI	CTCAG	1 cut(s)	150
BspDI	ATCGAT	1 cut(s)	14
BspFNI	CGCG	1 cut(s)	487
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	4 cut(s)	55, 390, 600, 661
BspMAI	CTGCAG	1 cut(s)	478
BspMI	ACCTGC	1 cut(s)	610
BspQI	GCTCTTC	2 cut(s)	157, 419
BspT104I	TTCGAA	1 cut(s)	180
BspT107I	GGYRCC	2 cut(s)	388, 598
BspTNI	GGTCTC	1 cut(s)	301
BsrFI	RCCGGY	1 cut(s)	283
BsrI	ACTGG	2 cut(s)	320, 691
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	22, 150
BssMI	GATC	1 cut(s)	268
BssSI	CACGAG	1 cut(s)	492
BssT1I	CCWWGG	2 cut(s)	22, 150
Bst2BI	CACGAG	1 cut(s)	492
Bst6I	CTCTTC	2 cut(s)	157, 419
BstBI	TTCGAA	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	738
BstDEI	CTNAG	3 cut(s)	158, 216, 384
BstF5I	GGATG	4 cut(s)	413, 451, 531, 629
BstFNI	CGCG	1 cut(s)	487
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNSI	RCATGY	1 cut(s)	145
BstPAI	GACNNNNGTC	1 cut(s)	293
BstSFI	CTRYAG	1 cut(s)	474
BstUI	CGCG	1 cut(s)	487
BstV1I	GCAGC	2 cut(s)	592, 745
Bsu15I	ATCGAT	1 cut(s)	14
Bsu36I	CCTNAGG	2 cut(s)	216, 384
BsuI	GTATCC	1 cut(s)	222
BsuTUI	ATCGAT	1 cut(s)	14
BtsCI	GGATG	4 cut(s)	413, 451, 531, 629
BtsI	GCAGTG	1 cut(s)	678
BtsIMutI	CAGTG	2 cut(s)	327, 678
BveI	ACCTGC	1 cut(s)	610
Cac8I	GCNNGC	1 cut(s)	738
CciI	TCATGA	1 cut(s)	366
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	651
ClaI	ATCGAT	1 cut(s)	14
CseI	GACGC	1 cut(s)	476
Csp6I	GTAC	6 cut(s)	81, 281, 380, 389, 479, 599
CspAI	ACCGGT	1 cut(s)	283
CviAII	CATG	4 cut(s)	44, 142, 367, 718
CviJI	RGCY	6 cut(s)	339, 374, 403, 484, 547, 660
CviKI_1	RGCY	6 cut(s)	339, 374, 403, 484, 547, 660
CviQI	GTAC	6 cut(s)	81, 281, 380, 389, 479, 599
DdeI	CTNAG	3 cut(s)	158, 216, 384
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eam1104I	CTCTTC	2 cut(s)	157, 419
EarI	CTCTTC	2 cut(s)	157, 419
Eco130I	CCWWGG	2 cut(s)	22, 150
Eco31I	GGTCTC	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	651
Eco81I	CCTNAGG	2 cut(s)	216, 384
EcoT14I	CCWWGG	2 cut(s)	22, 150
ErhI	CCWWGG	2 cut(s)	22, 150
FaeI	CATG	4 cut(s)	47, 145, 370, 721
FatI	CATG	4 cut(s)	43, 141, 366, 717
FbaI	TGATCA	1 cut(s)	268
Fnu4HI	GCNGC	3 cut(s)	485, 606, 734
FokI	GGATG	4 cut(s)	400, 458, 538, 616
Fsp4HI	GCNGC	3 cut(s)	485, 606, 734
FspBI	CTAG	2 cut(s)	507, 536
GluI	GCNGC	3 cut(s)	485, 606, 734
HapII	CCGG	1 cut(s)	284
HgaI	GACGC	1 cut(s)	476
Hin1II	CATG	4 cut(s)	47, 145, 370, 721
HinfI	GANTC	7 cut(s)	11, 16, 100, 305, 331, 363, 765
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	3 cut(s)	232, 298, 340
Hpy166II	GTNNAC	1 cut(s)	541
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	5 cut(s)	37, 367, 437, 512, 762
Hpy8I	GTNNAC	1 cut(s)	541
HpyAV	CCTTC	4 cut(s)	286, 319, 364, 573
HpyCH4V	TGCA	7 cut(s)	235, 449, 476, 497, 580, 697, 709
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpyF3I	CTNAG	3 cut(s)	158, 216, 384
Hsp92II	CATG	4 cut(s)	47, 145, 370, 721
KpnI	GGTACC	2 cut(s)	392, 602
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	268
LguI	GCTCTTC	2 cut(s)	157, 419
LmnI	GCTCC	1 cut(s)	665
Lsp1109I	GCAGC	2 cut(s)	592, 745
LweI	GCATC	2 cut(s)	244, 436
MaeI	CTAG	2 cut(s)	507, 536
MaeIII	GTNAC	3 cut(s)	86, 286, 328
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	4 cut(s)	20, 174, 402, 436
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	5 cut(s)	112, 125, 182, 247, 549
MlyI	GAGTC	2 cut(s)	94, 325
MmeI	TCCRAC	1 cut(s)	727
MnlI	CCTC	6 cut(s)	41, 44, 222, 267, 501, 588
MroXI	GAANNNNTTC	2 cut(s)	15, 469
MspI	CCGG	1 cut(s)	284
MvnI	CGCG	1 cut(s)	487
MwoI	GCNNNNNNNGC	1 cut(s)	138
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	4 cut(s)	47, 145, 370, 721
NlaIV	GGNNCC	4 cut(s)	55, 390, 600, 661
NmuCI	GTSAC	2 cut(s)	286, 328
NspI	RCATGY	1 cut(s)	145
NspV	TTCGAA	1 cut(s)	180
PagI	TCATGA	1 cut(s)	366
PciSI	GCTCTTC	2 cut(s)	157, 419
PdmI	GAANNNNTTC	2 cut(s)	15, 469
PfeI	GAWTC	5 cut(s)	11, 16, 305, 363, 765
PinAI	ACCGGT	1 cut(s)	283
PkrI	GCNGC	3 cut(s)	486, 607, 735
PleI	GAGTC	2 cut(s)	94, 325
PpsI	GAGTC	2 cut(s)	94, 325
PshAI	GACNNNNGTC	1 cut(s)	293
PspN4I	GGNNCC	4 cut(s)	55, 390, 600, 661
PspPI	GGNCC	1 cut(s)	651
PstI	CTGCAG	1 cut(s)	478
RsaI	GTAC	6 cut(s)	82, 282, 381, 390, 480, 600
RsaNI	GTAC	6 cut(s)	81, 281, 380, 389, 479, 599
SapI	GCTCTTC	2 cut(s)	157, 419
SatI	GCNGC	3 cut(s)	485, 606, 734
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	1 cut(s)	651
SchI	GAGTC	2 cut(s)	94, 325
SduI	GDGCHC	1 cut(s)	169
SfaNI	GCATC	2 cut(s)	244, 436
SfcI	CTRYAG	1 cut(s)	474
SfuI	TTCGAA	1 cut(s)	180
SinI	GGWCC	1 cut(s)	651
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
SpeI	ACTAGT	1 cut(s)	535
Sse9I	AATT	5 cut(s)	112, 125, 182, 247, 549
SsiI	CCGC	1 cut(s)	485
SspMI	CTAG	2 cut(s)	507, 536
StyI	CCWWGG	2 cut(s)	22, 150
TaqI	TCGA	2 cut(s)	14, 180
TasI	AATT	5 cut(s)	112, 125, 182, 247, 549
TatI	WGTACW	1 cut(s)	478
TauI	GCSGC	1 cut(s)	487
TfiI	GAWTC	5 cut(s)	11, 16, 305, 363, 765
TscAI	CASTG	2 cut(s)	327, 678
TseFI	GTSAC	2 cut(s)	286, 328
TseI	GCWGC	2 cut(s)	605, 733
Tsp45I	GTSAC	2 cut(s)	286, 328
TspDTI	ATGAA	4 cut(s)	58, 318, 383, 402
TspRI	CASTG	2 cut(s)	327, 678
VpaK11BI	GGWCC	1 cut(s)	651
XapI	RAATTY	2 cut(s)	112, 182
XceI	RCATGY	1 cut(s)	145
XmnI	GAANNNNTTC	2 cut(s)	15, 469
XspI	CTAG	2 cut(s)	507, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.