Rorug06G0182400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010526
Physical Location & Seq
Forward (+)
28840361 .. 28843343
2983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0182400.1

Sequence Viewer

Length: 1068 bp
ATGTATAAGATGGAAAAAGGATGGATGCATGCTGATAGGAGATCGTTGAGGTTTCAAATAGGGTTTGAGGATTTTCTTAAGTTTGCTTCAGCGAATGCTGCTGACAAATCAAATATATGCTGTCCTTGTTTGAAGTGTTTGAAGGATGAGATTGTCACTGTCAGCGACGCCATTGGTACTTGTGTTGCCTGGCCAAGAAACCTGGTTGTTATCCCTGGAGAAAAGGCACCCCCTAAAGCCATTCAGCAGAAGAAAAAAAATAGTGCTAATACCAAGAAGAGAATGAGAGATGTATTTGATGACAATGAAGACCTTGAAAACTTGCCACCAAATCTGCCAACGACATTAAAGGATTTGTGCACGTGGGGGAACAATTTCCTTAGAAACTGGGTCACCATCCACCCAACATTTGCTGCGGACCTTTTCGGCTGTTCAAAGAAAGTCTGTCTGTTTAGAAGTGATCTCTATACCATGGCCAACAAGCTAGAAGTATCAAATCGTGTACTTGTGTTTTACATGAGCTACCTTCATGAAGTCTTGAAGAAGTGTAAGATGGTGGATATGGTTGCCTTTGTCGATCCTGATCAGACTGGTACACTTGGGTGTGGAAATCCCACTGAAAGGGCTTGGTCTTTGTCAGATAGATATAGGCAAGGGAGGTTAGGGCAAATCTTTGTGGTTCCATATAACTCAGGTGCTCATTGGATGTTGACGGTTGTGAACCCAAATGAAGAAGTCGTGCACTTCATGGATCCACTTAAAAGGCGATTCGATACTGGGGAATGGAAATCTATTGTCAACAACTCAATTAAAATCTATAATGCTAACAAGAATCGGAAAGGAAGGAAAGTAATTCAATGGAAGAATCTTGCTGGTATTCCGGAGCAAAAAAATGACAAGACTTGTGGATATTTCATTATGCGTTACATGAAAGAAATTGTGGAGGACAAGAACTTGGATTTTAGTATTAAGTGGGGAACGAGGTCAAATTTGGTTTACACAGACAAGGATATTGATGAGATCCGAGCAGAATGGGCTAAGCATGTTTTGAAGTTCCCAGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

41.07

Weight (kDa)

9.15

Isoelectric Point (pI)

30.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transpos_assoc PF13963 6 - 52 3.8e-08 Transposase-associated domain
Peptidase_C48 PF02902 224 - 348 1.3e-11 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 226
AccIII TCCGGA 1 cut(s) 880
AciI CCGC 1 cut(s) 416
AclWI GGATC 4 cut(s) 572, 746, 759, 1015
AcoI YGGCCR 2 cut(s) 191, 474
AcsI RAATTY 1 cut(s) 988
AcuI CTGAAG 1 cut(s) 72
AcvI CACGTG 1 cut(s) 363
AcyI GRCGYC 1 cut(s) 168
AfaI GTAC 3 cut(s) 178, 504, 595
AfiI CCNNNNNNNGG 1 cut(s) 621
AflII CTTAAG 1 cut(s) 77
AgsI TTSAA 8 cut(s) 56, 133, 142, 317, 435, 541, 857, 1051
AjnI CCWGG 3 cut(s) 188, 201, 214
AleI CACNNNNGTG 1 cut(s) 601
AluBI AGCT 2 cut(s) 484, 522
AluI AGCT 2 cut(s) 484, 522
Alw21I GWGCWC 3 cut(s) 362, 700, 744
Alw44I GTGCAC 2 cut(s) 358, 740
AlwI GGATC 4 cut(s) 572, 746, 759, 1015
Aor13HI TCCGGA 1 cut(s) 880
AoxI GGCC 2 cut(s) 191, 474
ApaLI GTGCAC 2 cut(s) 358, 740
ApeKI GCWGC 2 cut(s) 98, 413
ApoI RAATTY 1 cut(s) 988
Asp700I GAANNNNTTC 1 cut(s) 374
AspS9I GGNCC 1 cut(s) 418
AsuHPI GGTGA 1 cut(s) 385
AvaII GGWCC 1 cut(s) 418
BaeGI GKGCMC 2 cut(s) 362, 744
BaeI ACNNNNGTAYC 2 cut(s) 168, 201
BalI TGGCCA 2 cut(s) 193, 476
BamHI GGATCC 1 cut(s) 751
BanI GGYRCC 1 cut(s) 226
BbrPI CACGTG 1 cut(s) 363
BbsI GAAGAC 1 cut(s) 315
Bbv12I GWGCWC 3 cut(s) 362, 700, 744
BbvI GCAGC 2 cut(s) 85, 400
BccI CCATC 4 cut(s) 4, 15, 404, 547
BciT130I CCWGG 3 cut(s) 190, 203, 216
BclI TGATCA 1 cut(s) 583
BfaI CTAG 1 cut(s) 485
BfrI CTTAAG 1 cut(s) 77
BisI GCNGC 2 cut(s) 99, 414
BlpI GCTNAGC 1 cut(s) 1038
BlsI GCNGC 2 cut(s) 100, 415
Bme1390I CCNGG 3 cut(s) 190, 203, 216
Bme18I GGWCC 1 cut(s) 418
BmgT120I GGNCC 1 cut(s) 418
BmiI GGNNCC 3 cut(s) 228, 681, 753
BmrFI CCNGG 3 cut(s) 190, 203, 216
BmrI ACTGGG 2 cut(s) 397, 786
BmsI GCATC 1 cut(s) 15
BmuI ACTGGG 2 cut(s) 397, 786
BpiI GAAGAC 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 237
Bpu1102I GCTNAGC 1 cut(s) 1038
BsaAI YACGTR 1 cut(s) 363
BsaBI GATNNNNATC 1 cut(s) 582
BsaHI GRCGYC 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 214, 471
BsaWI WCCGGW 1 cut(s) 880
Bsc4I CCNNNNNNNGG 1 cut(s) 621
Bse1I ACTGG 3 cut(s) 392, 595, 781
Bse8I GATNNNNATC 1 cut(s) 582
BseAI TCCGGA 1 cut(s) 880
BseBI CCWGG 3 cut(s) 190, 203, 216
BseDI CCNNGG 2 cut(s) 214, 471
BseGI GGATG 5 cut(s) 26, 30, 151, 396, 711
BseJI GATNNNNATC 1 cut(s) 582
BseLI CCNNNNNNNGG 1 cut(s) 621
BseMII CTCAG 1 cut(s) 705
BseNI ACTGG 3 cut(s) 392, 595, 781
BseSI GKGCMC 2 cut(s) 362, 744
BseXI GCAGC 2 cut(s) 85, 400
BshFI GGCC 2 cut(s) 193, 476
BshNI GGYRCC 1 cut(s) 226
BsiHKAI GWGCWC 3 cut(s) 362, 700, 744
BsiSI CCGG 1 cut(s) 881
BslI CCNNNNNNNGG 1 cut(s) 621
BsmI GAATGC 1 cut(s) 100
BsnI GGCC 2 cut(s) 193, 476
Bsp1286I GDGCHC 3 cut(s) 362, 700, 744
Bsp13I TCCGGA 1 cut(s) 880
Bsp143I GATC 6 cut(s) 41, 460, 577, 583, 751, 1020
Bsp1720I GCTNAGC 1 cut(s) 1038
Bsp19I CCATGG 1 cut(s) 471
BspACI CCGC 1 cut(s) 416
BspANI GGCC 2 cut(s) 193, 476
BspCNI CTCAG 1 cut(s) 704
BspEI TCCGGA 1 cut(s) 880
BspHI TCATGA 1 cut(s) 529
BspLI GGNNCC 3 cut(s) 228, 681, 753
BspPI GGATC 4 cut(s) 572, 746, 759, 1015
BspT107I GGYRCC 1 cut(s) 226
BspTI CTTAAG 1 cut(s) 77
BsrI ACTGG 3 cut(s) 392, 595, 781
BssECI CCNNGG 2 cut(s) 214, 471
BssMI GATC 6 cut(s) 41, 460, 577, 583, 751, 1020
BssNI GRCGYC 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 471
Bst2UI CCWGG 3 cut(s) 190, 203, 216
Bst4CI ACNGT 2 cut(s) 160, 715
Bst6I CTCTTC 1 cut(s) 272
BstACI GRCGYC 1 cut(s) 168
BstAFI CTTAAG 1 cut(s) 77
BstBAI YACGTR 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 3 cut(s) 380, 691, 1038
BstDSI CCRYGG 1 cut(s) 471
BstEII GGTNACC 1 cut(s) 391
BstF5I GGATG 5 cut(s) 26, 30, 151, 396, 711
BstKTI GATC 6 cut(s) 44, 463, 580, 586, 754, 1023
BstMBI GATC 6 cut(s) 41, 460, 577, 583, 751, 1020
BstMWI GCNNNNNNNGC 2 cut(s) 98, 1034
BstNI CCWGG 3 cut(s) 190, 203, 216
BstNSI RCATGY 2 cut(s) 32, 1046
BstPI GGTNACC 1 cut(s) 391
BstSCI CCNGG 3 cut(s) 188, 201, 214
BstSLI GKGCMC 2 cut(s) 362, 744
BstV1I GCAGC 2 cut(s) 85, 400
BstV2I GAAGAC 1 cut(s) 315
BstX2I RGATCY 2 cut(s) 751, 1020
BstYI RGATCY 2 cut(s) 751, 1020
BsuRI GGCC 2 cut(s) 193, 476
BtgI CCRYGG 1 cut(s) 471
BtsCI GGATG 5 cut(s) 26, 30, 151, 396, 711
BtsIMutI CAGTG 2 cut(s) 156, 615
Cac8I GCNNGC 1 cut(s) 30
CciI TCATGA 1 cut(s) 529
Cfr13I GGNCC 1 cut(s) 418
CseI GACGC 1 cut(s) 176
CsiI ACCWGGT 1 cut(s) 201
Csp6I GTAC 3 cut(s) 177, 503, 594
CspCI CAANNNNNGTGG 2 cut(s) 886, 921
CviAII CATG 7 cut(s) 29, 472, 517, 530, 748, 928, 1043
CviJI RGCY 8 cut(s) 193, 239, 429, 476, 484, 522, 626, 1037
CviKI_1 RGCY 8 cut(s) 193, 239, 429, 476, 484, 522, 626, 1037
CviQI GTAC 3 cut(s) 177, 503, 594
DdeI CTNAG 3 cut(s) 380, 691, 1038
DpnI GATC 6 cut(s) 43, 462, 579, 585, 753, 1022
DpnII GATC 6 cut(s) 41, 460, 577, 583, 751, 1020
EaeI YGGCCR 2 cut(s) 191, 474
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 418
Eco57I CTGAAG 1 cut(s) 72
Eco72I CACGTG 1 cut(s) 363
Eco91I GGTNACC 1 cut(s) 391
EcoO65I GGTNACC 1 cut(s) 391
EcoRII CCWGG 3 cut(s) 188, 201, 214
EcoT14I CCWWGG 1 cut(s) 471
EcoT22I ATGCAT 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 471
FaeI CATG 7 cut(s) 32, 475, 520, 533, 751, 931, 1046
FatI CATG 7 cut(s) 28, 471, 516, 529, 747, 927, 1042
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 2 cut(s) 99, 414
FokI GGATG 5 cut(s) 33, 37, 158, 383, 718
Fsp4HI GCNGC 2 cut(s) 99, 414
FspBI CTAG 1 cut(s) 485
GluI GCNGC 2 cut(s) 99, 414
GsuI CTGGAG 1 cut(s) 237
HaeIII GGCC 2 cut(s) 193, 476
HapII CCGG 1 cut(s) 881
HgaI GACGC 1 cut(s) 176
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 7 cut(s) 32, 475, 520, 533, 751, 931, 1046
HincII GTYRAC 2 cut(s) 711, 799
HindII GTYRAC 2 cut(s) 711, 799
HinfI GANTC 3 cut(s) 768, 832, 865
HpaII CCGG 1 cut(s) 881
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 8 cut(s) 360, 503, 596, 711, 721, 742, 799, 997
Hpy188I TCNGA 4 cut(s) 588, 640, 837, 1025
Hpy188III TCNNGA 4 cut(s) 530, 538, 581, 881
Hpy8I GTNNAC 8 cut(s) 360, 503, 596, 711, 721, 742, 799, 997
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 3 cut(s) 136, 536, 837
HpyCH4III ACNGT 2 cut(s) 160, 715
HpyCH4IV ACGT 1 cut(s) 362
HpyCH4V TGCA 3 cut(s) 28, 360, 742
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 1034
HpyF3I CTNAG 3 cut(s) 380, 691, 1038
HpySE526I ACGT 1 cut(s) 362
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 7 cut(s) 32, 475, 520, 533, 751, 931, 1046
Kpn2I TCCGGA 1 cut(s) 880
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 6 cut(s) 41, 460, 577, 583, 751, 1020
LmnI GCTCC 1 cut(s) 883
Lsp1109I GCAGC 2 cut(s) 85, 400
LweI GCATC 1 cut(s) 15
MabI ACCWGGT 1 cut(s) 201
MaeI CTAG 1 cut(s) 485
MaeII ACGT 1 cut(s) 362
MaeIII GTNAC 3 cut(s) 154, 391, 923
MalI GATC 6 cut(s) 43, 462, 579, 585, 753, 1022
MboI GATC 6 cut(s) 41, 460, 577, 583, 751, 1020
MboII GAAGA 6 cut(s) 262, 289, 320, 553, 743, 874
MflI RGATCY 2 cut(s) 751, 1020
MhlI GDGCHC 3 cut(s) 362, 700, 744
MlsI TGGCCA 2 cut(s) 193, 476
MluCI AATT 6 cut(s) 373, 807, 852, 936, 988, 1063
MluNI TGGCCA 2 cut(s) 193, 476
MnlI CCTC 5 cut(s) 42, 61, 651, 937, 975
Mox20I TGGCCA 2 cut(s) 193, 476
Mph1103I ATGCAT 1 cut(s) 30
MroI TCCGGA 1 cut(s) 880
MroXI GAANNNNTTC 1 cut(s) 374
MscI TGGCCA 2 cut(s) 193, 476
MseI TTAA 6 cut(s) 78, 347, 759, 810, 969, 1066
MslI CAYNNNNRTG 1 cut(s) 601
Msp20I TGGCCA 2 cut(s) 193, 476
MspCI CTTAAG 1 cut(s) 77
MspI CCGG 1 cut(s) 881
MspR9I CCNGG 3 cut(s) 190, 203, 216
Mva1269I GAATGC 1 cut(s) 100
MvaI CCWGG 3 cut(s) 190, 203, 216
MwoI GCNNNNNNNGC 2 cut(s) 98, 1034
NcoI CCATGG 1 cut(s) 471
NdeII GATC 6 cut(s) 41, 460, 577, 583, 751, 1020
NlaIII CATG 7 cut(s) 32, 475, 520, 533, 751, 931, 1046
NlaIV GGNNCC 3 cut(s) 228, 681, 753
NmuCI GTSAC 2 cut(s) 154, 391
NsiI ATGCAT 1 cut(s) 30
NspI RCATGY 2 cut(s) 32, 1046
OliI CACNNNNGTG 1 cut(s) 601
PaeI GCATGC 1 cut(s) 32
PagI TCATGA 1 cut(s) 529
PctI GAATGC 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 374
PfeI GAWTC 3 cut(s) 768, 832, 865
PkrI GCNGC 2 cut(s) 100, 415
PmaCI CACGTG 1 cut(s) 363
PmlI CACGTG 1 cut(s) 363
Ppu21I YACGTR 1 cut(s) 363
Psp6I CCWGG 3 cut(s) 188, 201, 214
PspCI CACGTG 1 cut(s) 363
PspEI GGTNACC 1 cut(s) 391
PspGI CCWGG 3 cut(s) 188, 201, 214
PspN4I GGNNCC 3 cut(s) 228, 681, 753
PspPI GGNCC 1 cut(s) 418
PsuI RGATCY 2 cut(s) 751, 1020
RsaI GTAC 3 cut(s) 178, 504, 595
RsaNI GTAC 3 cut(s) 177, 503, 594
RseI CAYNNNNRTG 1 cut(s) 601
SaqAI TTAA 6 cut(s) 78, 347, 759, 810, 969, 1066
SatI GCNGC 2 cut(s) 99, 414
Sau3AI GATC 6 cut(s) 41, 460, 577, 583, 751, 1020
Sau96I GGNCC 1 cut(s) 418
ScrFI CCNGG 3 cut(s) 190, 203, 216
SduI GDGCHC 3 cut(s) 362, 700, 744
SexAI ACCWGGT 1 cut(s) 201
SfaNI GCATC 1 cut(s) 15
SinI GGWCC 1 cut(s) 418
SmiMI CAYNNNNRTG 1 cut(s) 601
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SphI GCATGC 1 cut(s) 32
Sse9I AATT 6 cut(s) 373, 807, 852, 936, 988, 1063
SsiI CCGC 1 cut(s) 416
SspMI CTAG 1 cut(s) 485
StyD4I CCNGG 3 cut(s) 188, 201, 214
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 2 cut(s) 160, 715
TaiI ACGT 1 cut(s) 365
TaqI TCGA 2 cut(s) 576, 771
TasI AATT 6 cut(s) 373, 807, 852, 936, 988, 1063
TatI WGTACW 1 cut(s) 502
TfiI GAWTC 3 cut(s) 768, 832, 865
Tru1I TTAA 6 cut(s) 78, 347, 759, 810, 969, 1066
Tru9I TTAA 6 cut(s) 78, 347, 759, 810, 969, 1066
TscAI CASTG 2 cut(s) 163, 622
TseFI GTSAC 2 cut(s) 154, 391
TseI GCWGC 2 cut(s) 98, 413
Tsp45I GTSAC 2 cut(s) 154, 391
TspDTI ATGAA 7 cut(s) 321, 518, 546, 736, 744, 904, 944
TspRI CASTG 2 cut(s) 163, 622
Vha464I CTTAAG 1 cut(s) 77
VneI GTGCAC 2 cut(s) 358, 740
VpaK11BI GGWCC 1 cut(s) 418
XapI RAATTY 1 cut(s) 988
XceI RCATGY 2 cut(s) 32, 1046
XmnI GAANNNNTTC 1 cut(s) 374
XspI CTAG 1 cut(s) 485
Zsp2I ATGCAT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.