Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010526

Physical Location & Seq

Genomic Coordinates Forward (+)

19759823 .. 19761036

Gene Structure 1214 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012547

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTTCTCCAAGGAACTGAGAAGCGCACCAAAGTCATTCGAATTTGAAAACAGACGACAATCGCAAATGTATCCTAAGGTGAGAGTGAGGGTGCATCAACAAGAAAATAATATTCCTCCACAAAATGATCACAAGAGAGTACCGGTGACGAAGGTCTCTGATGAATCTCTATCTAAACCAGTGAAGGAGACTCAAGGCTGTTCTCTACCATTGAAACCCAGAATCATGAAGGCTTCTGTACCTAAGGTACCAGCAGGACAGCCACTTTCTTCATCCAAAGAGAAGAGCAGACATCTTGACAAGGATGCAAAACCAGATGTTAGAGCTTGTTCTGCAGTACAGCCGCGTCCTCGTGCAGTCTTATCTAGTCCTGACAATGATGGGATGATTGGACTAGTAAACAAGCTAATTGATAAGCAACCTTCTGCTTTCAAGGTGCCTAACACAAAGGAAAGGGTGCCTGCTGCCCAAGGCCAACAGAGTAAGACATCCCCAAGTCCTATGAGCAGGACCAAAGGCTCCAATAGAGCAGTGTCTAACAAGACTGGTCTTGGGCAAAGTAAAGTGCAAAAGACCATGATTGGAAAACAGCAGCAAGCAAGTGTTGGAATAGGGAAATCAAGATTCACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.22

Weight (kDa)

10.57

Isoelectric Point (pI)

62.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20360 FvH4_2g20360 FvH4_2g20360 FvH4_2g20360 FvH4_2g20360
malus_domestica	MD00G1060200.v1.1
prunus_persica	Prupe.8G216000_v2.0.a1
pyrus_communis	pycom10g15280
rosa_chinensis	RchiOBHm_Chr6g0286731
rosa_laevigata	RLG00000012547
rosa_multiflora	Rmu_sc0007546.1_g000009
rosa_roxburghii	Rroxscaffold_7G00182060
rosa_rugosa	Rorug06G0182400 Rorug06G0182500 Rorug06G0182600 Rorug06G0182700
rosa_samantha	Rh6AG295100 Rh6BG299000 Rh6CG299000 Rh6DG290900
rosa_wichuraiana	Rw6G025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	247
AccB1I	GGYRCC	3 cut(s)	247, 436, 457
AccII	CGCG	1 cut(s)	346
AciI	CCGC	1 cut(s)	344
AcsI	RAATTY	1 cut(s)	41
AfaI	GTAC	4 cut(s)	141, 240, 249, 339
AgeI	ACCGGT	1 cut(s)	142
AgsI	TTSAA	3 cut(s)	47, 214, 433
AhlI	ACTAGT	1 cut(s)	394
AluBI	AGCT	2 cut(s)	326, 406
AluI	AGCT	2 cut(s)	326, 406
Alw26I	GTCTC	2 cut(s)	160, 182
AoxI	GGCC	1 cut(s)	472
ApeKI	GCWGC	2 cut(s)	464, 592
ApoI	RAATTY	1 cut(s)	41
AsiGI	ACCGGT	1 cut(s)	142
Asp718I	GGTACC	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	510
AsuHPI	GGTGA	2 cut(s)	91, 157
AsuII	TTCGAA	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	510
AxyI	CCTNAGG	2 cut(s)	75, 243
BanI	GGYRCC	3 cut(s)	247, 436, 457
BauI	CACGAG	1 cut(s)	351
BbvI	GCAGC	2 cut(s)	451, 604
BccI	CCATC	1 cut(s)	374
BciVI	GTATCC	1 cut(s)	81
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	160, 182
BcuI	ACTAGT	1 cut(s)	394
BfaI	CTAG	2 cut(s)	366, 395
BfmI	CTRYAG	1 cut(s)	333
BfuI	GTATCC	1 cut(s)	81
BisI	GCNGC	3 cut(s)	344, 465, 593
BlsI	GCNGC	3 cut(s)	345, 466, 594
Bme18I	GGWCC	1 cut(s)	510
BmgT120I	GGNCC	1 cut(s)	510
BmiI	GGNNCC	4 cut(s)	249, 438, 459, 520
BmsI	GCATC	2 cut(s)	103, 295
BoxI	GACNNNNGTC	1 cut(s)	152
Bpu14I	TTCGAA	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	2 cut(s)	9, 469
BsaWI	WCCGGW	1 cut(s)	142
Bse118I	RCCGGY	1 cut(s)	142
Bse1I	ACTGG	2 cut(s)	179, 550
Bse21I	CCTNAGG	2 cut(s)	75, 243
BseDI	CCNNGG	2 cut(s)	9, 469
BseGI	GGATG	4 cut(s)	272, 310, 390, 488
BseMII	CTCAG	1 cut(s)	8
BseNI	ACTGG	2 cut(s)	179, 550
BseXI	GCAGC	2 cut(s)	451, 604
BsgI	GTGCAG	1 cut(s)	375
Bsh1236I	CGCG	1 cut(s)	346
BshFI	GGCC	1 cut(s)	474
BshNI	GGYRCC	3 cut(s)	247, 436, 457
BshTI	ACCGGT	1 cut(s)	142
BsiSI	CCGG	1 cut(s)	143
BsmAI	GTCTC	2 cut(s)	160, 182
BsnI	GGCC	1 cut(s)	474
Bso31I	GGTCTC	1 cut(s)	160
Bsp119I	TTCGAA	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	1 cut(s)	474
BspCNI	CTCAG	1 cut(s)	9
BspFNI	CGCG	1 cut(s)	346
BspHI	TCATGA	1 cut(s)	225
BspLI	GGNNCC	4 cut(s)	249, 438, 459, 520
BspMAI	CTGCAG	1 cut(s)	337
BspQI	GCTCTTC	1 cut(s)	278
BspT104I	TTCGAA	1 cut(s)	39
BspT107I	GGYRCC	3 cut(s)	247, 436, 457
BspTNI	GGTCTC	1 cut(s)	160
BsrFI	RCCGGY	1 cut(s)	142
BsrI	ACTGG	2 cut(s)	179, 550
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	2 cut(s)	9, 469
BssMI	GATC	1 cut(s)	127
BssSI	CACGAG	1 cut(s)	351
BssT1I	CCWWGG	2 cut(s)	9, 469
Bst2BI	CACGAG	1 cut(s)	351
Bst6I	CTCTTC	1 cut(s)	278
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	462, 597
BstDEI	CTNAG	3 cut(s)	17, 75, 243
BstF5I	GGATG	4 cut(s)	272, 310, 390, 488
BstFNI	CGCG	1 cut(s)	346
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	1 cut(s)	130
BstMAI	GTCTC	2 cut(s)	160, 182
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstPAI	GACNNNNGTC	1 cut(s)	152
BstSFI	CTRYAG	1 cut(s)	333
BstUI	CGCG	1 cut(s)	346
BstV1I	GCAGC	2 cut(s)	451, 604
Bsu36I	CCTNAGG	2 cut(s)	75, 243
BsuI	GTATCC	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	474
BtsCI	GGATG	4 cut(s)	272, 310, 390, 488
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	2 cut(s)	186, 537
Cac8I	GCNNGC	2 cut(s)	462, 597
CciI	TCATGA	1 cut(s)	225
CfoI	GCGC	1 cut(s)	26
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	510
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	4 cut(s)	140, 239, 248, 338
CspAI	ACCGGT	1 cut(s)	142
CviAII	CATG	2 cut(s)	226, 577
CviJI	RGCY	8 cut(s)	198, 233, 262, 326, 343, 406, 474, 519
CviKI_1	RGCY	8 cut(s)	198, 233, 262, 326, 343, 406, 474, 519
CviQI	GTAC	4 cut(s)	140, 239, 248, 338
DdeI	CTNAG	3 cut(s)	17, 75, 243
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco130I	CCWWGG	2 cut(s)	9, 469
Eco31I	GGTCTC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	510
Eco81I	CCTNAGG	2 cut(s)	75, 243
EcoT14I	CCWWGG	2 cut(s)	9, 469
ErhI	CCWWGG	2 cut(s)	9, 469
FaeI	CATG	2 cut(s)	229, 580
FaiI	YATR	3 cut(s)	227, 503, 578
FatI	CATG	2 cut(s)	225, 576
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	3 cut(s)	344, 465, 593
FokI	GGATG	4 cut(s)	259, 317, 397, 475
Fsp4HI	GCNGC	3 cut(s)	344, 465, 593
FspBI	CTAG	2 cut(s)	366, 395
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	3 cut(s)	344, 465, 593
HaeIII	GGCC	1 cut(s)	474
HapII	CCGG	1 cut(s)	143
HgaI	GACGC	1 cut(s)	335
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	2 cut(s)	229, 580
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HinfI	GANTC	4 cut(s)	164, 190, 222, 624
HpaII	CCGG	1 cut(s)	143
HphI	GGTGA	2 cut(s)	91, 157
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	4 cut(s)	226, 296, 371, 621
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	4 cut(s)	145, 178, 223, 432
HpyCH4V	TGCA	5 cut(s)	94, 308, 335, 356, 568
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	3 cut(s)	17, 75, 243
Hsp92II	CATG	2 cut(s)	229, 580
HspAI	GCGC	1 cut(s)	24
KpnI	GGTACC	1 cut(s)	251
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	127
LguI	GCTCTTC	1 cut(s)	278
LmnI	GCTCC	1 cut(s)	524
Lsp1109I	GCAGC	2 cut(s)	451, 604
LweI	GCATC	2 cut(s)	103, 295
MaeI	CTAG	2 cut(s)	366, 395
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	2 cut(s)	261, 295
MluCI	AATT	2 cut(s)	41, 408
MlyI	GAGTC	1 cut(s)	184
MmeI	TCCRAC	1 cut(s)	586
MnlI	CCTC	3 cut(s)	81, 126, 360
MspI	CCGG	1 cut(s)	143
MvnI	CGCG	1 cut(s)	346
MwoI	GCNNNNNNNGC	1 cut(s)	332
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	2 cut(s)	229, 580
NlaIV	GGNNCC	4 cut(s)	249, 438, 459, 520
NmuCI	GTSAC	1 cut(s)	145
NspV	TTCGAA	1 cut(s)	39
PagI	TCATGA	1 cut(s)	225
PciSI	GCTCTTC	1 cut(s)	278
PfeI	GAWTC	3 cut(s)	164, 222, 624
PinAI	ACCGGT	1 cut(s)	142
PkrI	GCNGC	3 cut(s)	345, 466, 594
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PshAI	GACNNNNGTC	1 cut(s)	152
PspN4I	GGNNCC	4 cut(s)	249, 438, 459, 520
PspPI	GGNCC	1 cut(s)	510
PstI	CTGCAG	1 cut(s)	337
RsaI	GTAC	4 cut(s)	141, 240, 249, 339
RsaNI	GTAC	4 cut(s)	140, 239, 248, 338
SapI	GCTCTTC	1 cut(s)	278
SatI	GCNGC	3 cut(s)	344, 465, 593
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	1 cut(s)	510
SchI	GAGTC	1 cut(s)	184
SetI	ASST	8 cut(s)	81, 156, 244, 249, 328, 408, 424, 438
SfaNI	GCATC	2 cut(s)	103, 295
SfcI	CTRYAG	1 cut(s)	333
SfuI	TTCGAA	1 cut(s)	39
SinI	GGWCC	1 cut(s)	510
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
SpeI	ACTAGT	1 cut(s)	394
Sse9I	AATT	2 cut(s)	41, 408
SsiI	CCGC	1 cut(s)	344
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	2 cut(s)	366, 395
StyI	CCWWGG	2 cut(s)	9, 469
TaqI	TCGA	1 cut(s)	39
TasI	AATT	2 cut(s)	41, 408
TatI	WGTACW	1 cut(s)	337
TauI	GCSGC	1 cut(s)	346
TfiI	GAWTC	3 cut(s)	164, 222, 624
TscAI	CASTG	2 cut(s)	186, 537
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	2 cut(s)	464, 592
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	3 cut(s)	177, 242, 261
TspRI	CASTG	2 cut(s)	186, 537
VpaK11BI	GGWCC	1 cut(s)	510
XapI	RAATTY	1 cut(s)	41
XspI	CTAG	2 cut(s)	366, 395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.