RchiOBHm_Chr6g0286731

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010526
Physical Location & Seq
Reverse (-)
50158882 .. 50160275
1394 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25719

Sequence Viewer

Length: 411 bp
ATGAAGGCTTCTGTACCTAATGTACCAGCAGGACAGCCACTTTCTTCATCCAAAGAGAAGAGCAGACGTCTTGACAAGGATGCAAAACCAGATGTTAGAGCTTGTTCTGCAGTACAGCCGCGTCCTCGTGCAGTCTTATCTAGTCCTGACAATGATGGGATGATTGGACTAGTAAACAAGCTAATTGATAAGCAACCTTCTGCTTCCAAGGTGCCTAACACAAAGGAGAGGGTACCTGCTGCCCAAAGGCAACAGAGTAAGACATCCCCAAGTCCTATGAGCATGACCAAAGGCTCCAATAGAGCAGTGTCTAACAAGACTGGTCTTGTGCAAAGTAAAGTGCAAAAGACCATGATTGGAAAACAGCAGCAAGCAAGTGTTGGAATGGGGAAATCAATATTCACTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.49

Weight (kDa)

10.75

Isoelectric Point (pI)

61.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 244
Acc65I GGTACC 1 cut(s) 232
AccB1I GGYRCC 2 cut(s) 211, 232
AccII CGCG 1 cut(s) 121
AciI CCGC 1 cut(s) 119
AcyI GRCGYC 1 cut(s) 67
AfaI GTAC 4 cut(s) 15, 24, 114, 234
AhlI ACTAGT 1 cut(s) 169
AluBI AGCT 2 cut(s) 101, 181
AluI AGCT 2 cut(s) 101, 181
ApeKI GCWGC 2 cut(s) 239, 367
Asp718I GGTACC 1 cut(s) 232
BanI GGYRCC 2 cut(s) 211, 232
BauI CACGAG 1 cut(s) 126
BbvI GCAGC 2 cut(s) 226, 379
BccI CCATC 1 cut(s) 149
BcuI ACTAGT 1 cut(s) 169
BfaI CTAG 2 cut(s) 141, 170
BfmI CTRYAG 1 cut(s) 108
BfuAI ACCTGC 1 cut(s) 244
BisI GCNGC 3 cut(s) 119, 240, 368
BlsI GCNGC 3 cut(s) 120, 241, 369
BmiI GGNNCC 3 cut(s) 213, 234, 295
BmsI GCATC 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 207
Bse1I ACTGG 1 cut(s) 325
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 4 cut(s) 47, 85, 165, 263
BseNI ACTGG 1 cut(s) 325
BseXI GCAGC 2 cut(s) 226, 379
BsgI GTGCAG 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 121
BshNI GGYRCC 2 cut(s) 211, 232
BspACI CCGC 1 cut(s) 119
BspFNI CGCG 1 cut(s) 121
BspLI GGNNCC 3 cut(s) 213, 234, 295
BspMAI CTGCAG 1 cut(s) 112
BspMI ACCTGC 1 cut(s) 244
BspQI GCTCTTC 1 cut(s) 53
BspT107I GGYRCC 2 cut(s) 211, 232
BsrI ACTGG 1 cut(s) 325
BssECI CCNNGG 1 cut(s) 207
BssNI GRCGYC 1 cut(s) 67
BssSI CACGAG 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 207
Bst2BI CACGAG 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 53
BstACI GRCGYC 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 372
BstF5I GGATG 4 cut(s) 47, 85, 165, 263
BstFNI CGCG 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstSFI CTRYAG 1 cut(s) 108
BstUI CGCG 1 cut(s) 121
BstV1I GCAGC 2 cut(s) 226, 379
BtsCI GGATG 4 cut(s) 47, 85, 165, 263
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 312
BveI ACCTGC 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 372
CseI GACGC 1 cut(s) 110
Csp6I GTAC 4 cut(s) 14, 23, 113, 233
CviAII CATG 2 cut(s) 283, 352
CviJI RGCY 6 cut(s) 8, 37, 101, 118, 181, 294
CviKI_1 RGCY 6 cut(s) 8, 37, 101, 118, 181, 294
CviQI GTAC 4 cut(s) 14, 23, 113, 233
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 2 cut(s) 286, 355
FaiI YATR 3 cut(s) 278, 284, 353
FatI CATG 2 cut(s) 282, 351
Fnu4HI GCNGC 3 cut(s) 119, 240, 368
FokI GGATG 4 cut(s) 34, 92, 172, 250
Fsp4HI GCNGC 3 cut(s) 119, 240, 368
FspBI CTAG 2 cut(s) 141, 170
GluI GCNGC 3 cut(s) 119, 240, 368
HgaI GACGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 67
Hin1II CATG 2 cut(s) 286, 355
Hpy166II GTNNAC 1 cut(s) 175
Hpy188III TCNNGA 2 cut(s) 71, 146
Hpy8I GTNNAC 1 cut(s) 175
HpyAV CCTTC 1 cut(s) 207
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 5 cut(s) 83, 110, 131, 331, 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpySE526I ACGT 1 cut(s) 67
Hsp92I GRCGYC 1 cut(s) 67
Hsp92II CATG 2 cut(s) 286, 355
KpnI GGTACC 1 cut(s) 236
LguI GCTCTTC 1 cut(s) 53
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 6 cut(s) 15, 39, 102, 159, 249, 306
Lsp1109I GCAGC 2 cut(s) 226, 379
LweI GCATC 1 cut(s) 70
MaeI CTAG 2 cut(s) 141, 170
MaeII ACGT 1 cut(s) 67
MboII GAAGA 2 cut(s) 36, 70
MluCI AATT 1 cut(s) 183
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 2 cut(s) 135, 222
MvnI CGCG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 107
NlaIII CATG 2 cut(s) 286, 355
NlaIV GGNNCC 3 cut(s) 213, 234, 295
PciSI GCTCTTC 1 cut(s) 53
PkrI GCNGC 3 cut(s) 120, 241, 369
PspN4I GGNNCC 3 cut(s) 213, 234, 295
PstI CTGCAG 1 cut(s) 112
RsaI GTAC 4 cut(s) 15, 24, 114, 234
RsaNI GTAC 4 cut(s) 14, 23, 113, 233
SapI GCTCTTC 1 cut(s) 53
SatI GCNGC 3 cut(s) 119, 240, 368
SetI ASST 7 cut(s) 19, 70, 103, 183, 199, 213, 238
SfaNI GCATC 1 cut(s) 70
SfcI CTRYAG 1 cut(s) 108
SpeI ACTAGT 1 cut(s) 169
Sse9I AATT 1 cut(s) 183
SsiI CCGC 1 cut(s) 119
SspI AATATT 1 cut(s) 399
SspMI CTAG 2 cut(s) 141, 170
StyI CCWWGG 1 cut(s) 207
TaiI ACGT 1 cut(s) 70
TasI AATT 1 cut(s) 183
TatI WGTACW 1 cut(s) 112
TauI GCSGC 1 cut(s) 121
TscAI CASTG 1 cut(s) 312
TseI GCWGC 2 cut(s) 239, 367
TspDTI ATGAA 2 cut(s) 17, 36
TspRI CASTG 1 cut(s) 312
XspI CTAG 2 cut(s) 141, 170
ZraI GACGTC 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.