Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0010526

Physical Location & Seq

Genomic Coordinates Reverse (-)

48901325 .. 48903714

Gene Structure 2390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG290900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGATTTACAGACTGTACAAGTTGTTCTTCTCCGACGGGGACGACGTCTTGGGTGTCGAGACCTCTGATTCTACTGCTCTCTTCGCCATCGCTGACAGGCTCGCTAAGCTCTATGATGGCGACAAGGTCTCCGTTGGCCTCCGGATCCCCGACGTCGATACAGCTTCCCCTAAGCAAATCAATTTGTTTCTCAAAGGGGAGGCAGTGGTGATAGCCGTCAAGAACTTGTCAGGATTCATCTCCGTCAAGCTCGATGGCAGCTGGGTTTCTGAGAGCATCACTAAGCACAAAGCAGACCAGCATCCTGATACTACTCAAAACACAAATTTGAGTATAAAATTATGCTTCAAAAGCATGTTCTCCAAGGAACTGAGAAGAGCACCAAAGTCATTCGAATTTGAAAACAGACGACAATCGCAAATGCATCCTACGGTGAGAGTGAGGGTGCATCAACAAGAAAATTATATTCCTCCACAAAATGATCACAAGAGTGTACCGGTGACGAAGGTCTCTGATGAATCTCTATCTATACCAGTGAAGGTGACTCAAGGCTGTTCTCTACCATTGAAACCCAGAATCATGAAGGCTTCTGTACCTAATGTACCAGCAGGACAGCCACTTTCTTCATCCAAAGAGAAGAGCAGACGTCTTGACAAGGATGCAAAACCAGATGTTAGAGCTTGTTCTGCAGTACAGCCGCGTCCTCGTGCAGTCTTATCTAGTCCTGACAATGATGGGATGATTGGACTAGTAAACAAGCTAATTGATAAGCAACCTTCTGCTTCCAAGGTGCCTAACACAAAGGAGAGGGTACCTGCTGCCCAAAGGCAACAGAGTAAGACATCCCCAAGTCCTATGAGCATGACCAAAGGCTCCAATAGAGCAGTGTCTAACAAGACTGGTCTTGTGCAAAGTAAAGTGCAAAAGACCATGATTGGAAAACAGCAGCAAGCAAGTGTTGGAATGGGGAAATCAATATTCACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

329

Amino Acids

36.14

Weight (kDa)

9.94

Isoelectric Point (pI)

41.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20360 FvH4_2g20360 FvH4_2g20360 FvH4_2g20360 FvH4_2g20360
malus_domestica	MD00G1060200.v1.1
prunus_persica	Prupe.8G216000_v2.0.a1
pyrus_communis	pycom10g15280
rosa_chinensis	RchiOBHm_Chr6g0286731
rosa_laevigata	RLG00000012547
rosa_multiflora	Rmu_sc0007546.1_g000009
rosa_roxburghii	Rroxscaffold_7G00182060
rosa_rugosa	Rorug06G0182400 Rorug06G0182500 Rorug06G0182600 Rorug06G0182700
rosa_samantha	Rh6AG295100 Rh6BG299000 Rh6CG299000 Rh6DG290900
rosa_wichuraiana	Rw6G025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	48, 156, 649
Acc36I	ACCTGC	1 cut(s)	823
Acc65I	GGTACC	1 cut(s)	811
AccB1I	GGYRCC	2 cut(s)	790, 811
AccII	CGCG	1 cut(s)	700
AccIII	TCCGGA	1 cut(s)	141
AciI	CCGC	1 cut(s)	698
AclWI	GGATC	2 cut(s)	139, 152
AcsI	RAATTY	2 cut(s)	325, 395
AcyI	GRCGYC	3 cut(s)	45, 153, 646
AfaI	GTAC	6 cut(s)	17, 495, 594, 603, 693, 813
AgeI	ACCGGT	1 cut(s)	496
AgsI	TTSAA	3 cut(s)	349, 401, 568
AhlI	ACTAGT	1 cut(s)	748
AleI	CACNNNNGTG	1 cut(s)	489
AluBI	AGCT	6 cut(s)	109, 164, 250, 261, 680, 760
AluI	AGCT	6 cut(s)	109, 164, 250, 261, 680, 760
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	3 cut(s)	53, 133, 514
AlwI	GGATC	2 cut(s)	139, 152
Aor13HI	TCCGGA	1 cut(s)	141
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	3 cut(s)	258, 818, 946
ApoI	RAATTY	2 cut(s)	325, 395
AsiGI	ACCGGT	1 cut(s)	496
Asp718I	GGTACC	1 cut(s)	811
AsuHPI	GGTGA	4 cut(s)	220, 445, 511, 553
AsuII	TTCGAA	1 cut(s)	393
BamHI	GGATCC	1 cut(s)	144
BanI	GGYRCC	2 cut(s)	790, 811
BauI	CACGAG	1 cut(s)	705
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	3 cut(s)	270, 805, 958
BccI	CCATC	4 cut(s)	95, 110, 248, 728
BceAI	ACGGC	1 cut(s)	200
BclI	TGATCA	1 cut(s)	481
BcoDI	GTCTC	3 cut(s)	53, 133, 514
BcuI	ACTAGT	1 cut(s)	748
BfaI	CTAG	2 cut(s)	720, 749
BfmI	CTRYAG	1 cut(s)	687
BfuAI	ACCTGC	1 cut(s)	823
BisI	GCNGC	4 cut(s)	259, 698, 819, 947
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	4 cut(s)	260, 699, 820, 948
BmiI	GGNNCC	4 cut(s)	146, 792, 813, 874
BmsI	GCATC	5 cut(s)	285, 310, 433, 457, 649
BoxI	GACNNNNGTC	1 cut(s)	506
Bpu10I	CCTNAGC	1 cut(s)	171
Bpu1102I	GCTNAGC	1 cut(s)	105
Bpu14I	TTCGAA	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	531
BsaHI	GRCGYC	3 cut(s)	45, 153, 646
BsaI	GGTCTC	3 cut(s)	53, 133, 514
BsaJI	CCNNGG	2 cut(s)	363, 786
BsaWI	WCCGGW	2 cut(s)	141, 496
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bse118I	RCCGGY	1 cut(s)	496
Bse1I	ACTGG	2 cut(s)	533, 904
BseAI	TCCGGA	1 cut(s)	141
BseDI	CCNNGG	2 cut(s)	363, 786
BseGI	GGATG	6 cut(s)	301, 424, 626, 664, 744, 842
BseMII	CTCAG	2 cut(s)	261, 362
BseNI	ACTGG	2 cut(s)	533, 904
BseXI	GCAGC	3 cut(s)	270, 805, 958
BseYI	CCCAGC	1 cut(s)	261
BsgI	GTGCAG	1 cut(s)	729
Bsh1236I	CGCG	1 cut(s)	700
BshFI	GGCC	1 cut(s)	138
BshNI	GGYRCC	2 cut(s)	790, 811
BshTI	ACCGGT	1 cut(s)	496
BsiHKAI	GWGCWC	1 cut(s)	382
BsiSI	CCGG	2 cut(s)	142, 497
BslFI	GGGAC	1 cut(s)	53
BsmAI	GTCTC	3 cut(s)	53, 133, 514
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	138
Bso31I	GGTCTC	3 cut(s)	53, 133, 514
Bsp119I	TTCGAA	1 cut(s)	393
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp13I	TCCGGA	1 cut(s)	141
Bsp1407I	TGTACA	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	144, 481
Bsp1720I	GCTNAGC	1 cut(s)	105
BspACI	CCGC	1 cut(s)	698
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	2 cut(s)	262, 363
BspEI	TCCGGA	1 cut(s)	141
BspFNI	CGCG	1 cut(s)	700
BspHI	TCATGA	1 cut(s)	579
BspLI	GGNNCC	4 cut(s)	146, 792, 813, 874
BspMAI	CTGCAG	1 cut(s)	691
BspMI	ACCTGC	1 cut(s)	823
BspPI	GGATC	2 cut(s)	139, 152
BspQI	GCTCTTC	2 cut(s)	370, 632
BspT104I	TTCGAA	1 cut(s)	393
BspT107I	GGYRCC	2 cut(s)	790, 811
BspTNI	GGTCTC	3 cut(s)	53, 133, 514
BsrFI	RCCGGY	1 cut(s)	496
BsrGI	TGTACA	1 cut(s)	15
BsrI	ACTGG	2 cut(s)	533, 904
BssAI	RCCGGY	1 cut(s)	496
BssECI	CCNNGG	2 cut(s)	363, 786
BssMI	GATC	2 cut(s)	144, 481
BssNI	GRCGYC	3 cut(s)	45, 153, 646
BssSI	CACGAG	1 cut(s)	705
BssT1I	CCWWGG	2 cut(s)	363, 786
Bst2BI	CACGAG	1 cut(s)	705
Bst4CI	ACNGT	2 cut(s)	15, 433
Bst6I	CTCTTC	3 cut(s)	86, 370, 632
BstACI	GRCGYC	3 cut(s)	45, 153, 646
BstAUI	TGTACA	1 cut(s)	15
BstBI	TTCGAA	1 cut(s)	393
BstC8I	GCNNGC	2 cut(s)	102, 951
BstDEI	CTNAG	5 cut(s)	105, 171, 270, 282, 371
BstF5I	GGATG	6 cut(s)	301, 424, 626, 664, 744, 842
BstFNI	CGCG	1 cut(s)	700
BstKTI	GATC	2 cut(s)	147, 484
BstMAI	GTCTC	3 cut(s)	53, 133, 514
BstMBI	GATC	2 cut(s)	144, 481
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 106, 351, 686
BstNSI	RCATGY	1 cut(s)	358
BstPAI	GACNNNNGTC	1 cut(s)	506
BstSFI	CTRYAG	1 cut(s)	687
BstUI	CGCG	1 cut(s)	700
BstV1I	GCAGC	3 cut(s)	270, 805, 958
BstX2I	RGATCY	1 cut(s)	144
BstYI	RGATCY	1 cut(s)	144
BsuRI	GGCC	1 cut(s)	138
BtgZI	GCGATG	1 cut(s)	73
BtsCI	GGATG	6 cut(s)	301, 424, 626, 664, 744, 842
BtsI	GCAGTG	2 cut(s)	210, 891
BtsIMutI	CAGTG	3 cut(s)	210, 540, 891
BveI	ACCTGC	1 cut(s)	823
Cac8I	GCNNGC	2 cut(s)	102, 951
CciI	TCATGA	1 cut(s)	579
Cfr10I	RCCGGY	1 cut(s)	496
CseI	GACGC	1 cut(s)	689
Csp6I	GTAC	6 cut(s)	16, 494, 593, 602, 692, 812
CspAI	ACCGGT	1 cut(s)	496
CviAII	CATG	4 cut(s)	355, 580, 862, 931
CviQI	GTAC	6 cut(s)	16, 494, 593, 602, 692, 812
DdeI	CTNAG	5 cut(s)	105, 171, 270, 282, 371
DpnI	GATC	2 cut(s)	146, 483
DpnII	GATC	2 cut(s)	144, 481
Eam1104I	CTCTTC	3 cut(s)	86, 370, 632
EarI	CTCTTC	3 cut(s)	86, 370, 632
Eco130I	CCWWGG	2 cut(s)	363, 786
Eco31I	GGTCTC	3 cut(s)	53, 133, 514
EcoT14I	CCWWGG	2 cut(s)	363, 786
EcoT22I	ATGCAT	1 cut(s)	426
ErhI	CCWWGG	2 cut(s)	363, 786
FaeI	CATG	4 cut(s)	358, 583, 865, 934
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	4 cut(s)	354, 579, 861, 930
FbaI	TGATCA	1 cut(s)	481
Fnu4HI	GCNGC	4 cut(s)	259, 698, 819, 947
FokI	GGATG	6 cut(s)	288, 411, 613, 671, 751, 829
Fsp4HI	GCNGC	4 cut(s)	259, 698, 819, 947
FspBI	CTAG	2 cut(s)	720, 749
GluI	GCNGC	4 cut(s)	259, 698, 819, 947
GsaI	CCCAGC	1 cut(s)	265
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	2 cut(s)	142, 497
HgaI	GACGC	1 cut(s)	689
Hin1I	GRCGYC	3 cut(s)	45, 153, 646
Hin1II	CATG	4 cut(s)	358, 583, 865, 934
HinfI	GANTC	5 cut(s)	68, 234, 518, 544, 576
HpaII	CCGG	2 cut(s)	142, 497
HphI	GGTGA	4 cut(s)	220, 445, 511, 553
Hpy166II	GTNNAC	2 cut(s)	494, 754
Hpy188I	TCNGA	4 cut(s)	34, 67, 271, 514
Hpy188III	TCNNGA	8 cut(s)	58, 142, 220, 231, 305, 580, 650, 725
Hpy8I	GTNNAC	2 cut(s)	494, 754
Hpy99I	CGWCG	4 cut(s)	38, 47, 155, 158
HpyAV	CCTTC	4 cut(s)	499, 532, 577, 786
HpyCH4III	ACNGT	2 cut(s)	15, 433
HpyCH4IV	ACGT	3 cut(s)	45, 153, 646
HpyCH4V	TGCA	7 cut(s)	424, 448, 662, 689, 710, 910, 922
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 106, 351, 686
HpyF3I	CTNAG	5 cut(s)	105, 171, 270, 282, 371
HpySE526I	ACGT	3 cut(s)	45, 153, 646
Hsp92I	GRCGYC	3 cut(s)	45, 153, 646
Hsp92II	CATG	4 cut(s)	358, 583, 865, 934
Kpn2I	TCCGGA	1 cut(s)	141
KpnI	GGTACC	1 cut(s)	815
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	2 cut(s)	144, 481
LguI	GCTCTTC	2 cut(s)	370, 632
LmnI	GCTCC	1 cut(s)	878
Lsp1109I	GCAGC	3 cut(s)	270, 805, 958
LweI	GCATC	5 cut(s)	285, 310, 433, 457, 649
MaeI	CTAG	2 cut(s)	720, 749
MaeII	ACGT	3 cut(s)	45, 153, 646
MaeIII	GTNAC	2 cut(s)	499, 541
MalI	GATC	2 cut(s)	146, 483
MboI	GATC	2 cut(s)	144, 481
MboII	GAAGA	5 cut(s)	19, 73, 387, 615, 649
MflI	RGATCY	1 cut(s)	144
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	6 cut(s)	181, 325, 338, 395, 460, 762
MlyI	GAGTC	1 cut(s)	538
MmeI	TCCRAC	2 cut(s)	57, 940
MnlI	CCTC	7 cut(s)	73, 149, 193, 435, 480, 714, 801
Mph1103I	ATGCAT	1 cut(s)	426
MroI	TCCGGA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	489
MspA1I	CMGCKG	1 cut(s)	261
MspI	CCGG	2 cut(s)	142, 497
MvnI	CGCG	1 cut(s)	700
MwoI	GCNNNNNNNGC	4 cut(s)	83, 106, 351, 686
NdeII	GATC	2 cut(s)	144, 481
NlaIII	CATG	4 cut(s)	358, 583, 865, 934
NlaIV	GGNNCC	4 cut(s)	146, 792, 813, 874
NmuCI	GTSAC	2 cut(s)	499, 541
NsiI	ATGCAT	1 cut(s)	426
NspI	RCATGY	1 cut(s)	358
NspV	TTCGAA	1 cut(s)	393
OliI	CACNNNNGTG	1 cut(s)	489
PagI	TCATGA	1 cut(s)	579
PciSI	GCTCTTC	2 cut(s)	370, 632
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PfeI	GAWTC	4 cut(s)	68, 234, 518, 576
PflFI	GACNNNGTC	2 cut(s)	44, 125
PinAI	ACCGGT	1 cut(s)	496
PkrI	GCNGC	4 cut(s)	260, 699, 820, 948
PleI	GAGTC	1 cut(s)	538
PpsI	GAGTC	1 cut(s)	538
PshAI	GACNNNNGTC	1 cut(s)	506
PspFI	CCCAGC	1 cut(s)	261
PspN4I	GGNNCC	4 cut(s)	146, 792, 813, 874
PsrI	GAACNNNNNNTAC	2 cut(s)	8, 40
PstI	CTGCAG	1 cut(s)	691
PsuI	RGATCY	1 cut(s)	144
PsyI	GACNNNGTC	2 cut(s)	44, 125
PvuII	CAGCTG	1 cut(s)	261
RsaI	GTAC	6 cut(s)	17, 495, 594, 603, 693, 813
RsaNI	GTAC	6 cut(s)	16, 494, 593, 602, 692, 812
RseI	CAYNNNNRTG	1 cut(s)	489
SapI	GCTCTTC	2 cut(s)	370, 632
SatI	GCNGC	4 cut(s)	259, 698, 819, 947
Sau3AI	GATC	2 cut(s)	144, 481
SchI	GAGTC	1 cut(s)	538
SduI	GDGCHC	1 cut(s)	382
SfaNI	GCATC	5 cut(s)	285, 310, 433, 457, 649
SfcI	CTRYAG	1 cut(s)	687
SfuI	TTCGAA	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	1 cut(s)	546
SmoI	CTYRAG	1 cut(s)	546
SpeI	ACTAGT	1 cut(s)	748
Sse9I	AATT	6 cut(s)	181, 325, 338, 395, 460, 762
SsiI	CCGC	1 cut(s)	698
SspI	AATATT	1 cut(s)	978
SspMI	CTAG	2 cut(s)	720, 749
StyI	CCWWGG	2 cut(s)	363, 786
TaaI	ACNGT	2 cut(s)	15, 433
TaiI	ACGT	3 cut(s)	48, 156, 649
TaqI	TCGA	4 cut(s)	57, 156, 252, 393
TasI	AATT	6 cut(s)	181, 325, 338, 395, 460, 762
TatI	WGTACW	2 cut(s)	15, 691
TauI	GCSGC	1 cut(s)	700
TfiI	GAWTC	4 cut(s)	68, 234, 518, 576
TscAI	CASTG	3 cut(s)	210, 540, 891
TseFI	GTSAC	2 cut(s)	499, 541
TseI	GCWGC	3 cut(s)	258, 818, 946
Tsp45I	GTSAC	2 cut(s)	499, 541
TspDTI	ATGAA	4 cut(s)	226, 531, 596, 615
TspGWI	ACGGA	2 cut(s)	121, 232
TspRI	CASTG	3 cut(s)	210, 540, 891
Tth111I	GACNNNGTC	2 cut(s)	44, 125
XapI	RAATTY	2 cut(s)	325, 395
XceI	RCATGY	1 cut(s)	358
XspI	CTAG	2 cut(s)	720, 749
ZraI	GACGTC	3 cut(s)	46, 154, 647
Zsp2I	ATGCAT	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.