Rroxscaffold_7G00182060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0010526
Physical Location & Seq
Forward (+)
21071412 .. 21073807
2396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00182060.1

Sequence Viewer

Length: 738 bp
ATGTTCTCCAAGGAACTGATGAGAAGCGCACCAAAGTCATTCGAATTTGAAAACATACGACAATCGCAAAGTAATCTTCGTTTTCGAATAGTTGAGGCACAAACAGCAGAGTACGTATTGTATCCTAAGGTGAGAGTGAGGGTGCATCAACAAGAAAATCATATTCCTCCACAAAATGATCACAGGAGAGTACCGGTGACGAAGGTCTCTGATGAATCTCTATCTATACCAGGGAAGGAGATTCAAGGGTGTTCTCTACCATTGAAACCCAGAATCATGAAGGCTTCTGTACCTAGGGTACCAGCAGGACAGTTACTTTCTTCATCCAAAGAGAAGAGCAGACATCTTGACAAGGATGCAAAACCAGATGCTAGAACTTGTTCTGCAGTACAGCCGCGTCCTCGTGCAGTCTTATCTAGTCCTGACAATGATGGGATGATTGGACTAGTAAACAAGCAAATTGATAAGCAACCTTCTGCTTTCAAGGTGCATAACACAAAGGAGAGGGTACCTGCTGCCCAAAGGCAACAGAGTAAGACATCCCCAAGTCCTATGAGCAGGACCAAAGGCTCCAATAGAGCAGTGTCTAACAAGACTGGTCTTGTGCAAAGTGGGATTGATGTGTTTTGCAGTAAGGTTGTGAGGCTTGGGATTGCTCAGAGAAGAAGAGCTGTGGAGATTGGAGAGGAGAAGAAAGAGAGTGAGGGCTCTGATCACTCCGTCGGAGGTCTGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

27.16

Weight (kDa)

10.18

Isoelectric Point (pI)

60.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 520
Acc65I GGTACC 2 cut(s) 298, 508
AccB1I GGYRCC 2 cut(s) 298, 508
AccII CGCG 1 cut(s) 397
AciI CCGC 1 cut(s) 395
AcsI RAATTY 1 cut(s) 44
AfaI GTAC 6 cut(s) 113, 192, 291, 300, 390, 510
AgeI ACCGGT 1 cut(s) 193
AgsI TTSAA 4 cut(s) 50, 245, 265, 484
AhlI ACTAGT 1 cut(s) 445
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 1 cut(s) 671
AluI AGCT 1 cut(s) 671
Alw26I GTCTC 1 cut(s) 211
ApeKI GCWGC 1 cut(s) 515
ApoI RAATTY 1 cut(s) 44
AsiGI ACCGGT 1 cut(s) 193
Asp700I GAANNNNTTC 1 cut(s) 379
Asp718I GGTACC 2 cut(s) 298, 508
AspA2I CCTAGG 1 cut(s) 293
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 561
AsuHPI GGTGA 2 cut(s) 142, 208
AsuII TTCGAA 2 cut(s) 42, 85
AvaII GGWCC 1 cut(s) 561
AvrII CCTAGG 1 cut(s) 293
AxyI CCTNAGG 1 cut(s) 126
BanI GGYRCC 2 cut(s) 298, 508
BanII GRGCYC 1 cut(s) 710
BauI CACGAG 1 cut(s) 402
BbvI GCAGC 1 cut(s) 502
BccI CCATC 1 cut(s) 425
BciT130I CCWGG 1 cut(s) 231
BciVI GTATCC 1 cut(s) 132
BclI TGATCA 2 cut(s) 178, 712
BcoDI GTCTC 1 cut(s) 211
BcuI ACTAGT 1 cut(s) 445
BfaI CTAG 4 cut(s) 294, 372, 417, 446
BfmI CTRYAG 1 cut(s) 384
BfuAI ACCTGC 1 cut(s) 520
BfuI GTATCC 1 cut(s) 132
BisI GCNGC 2 cut(s) 395, 516
BlnI CCTAGG 1 cut(s) 293
BlsI GCNGC 2 cut(s) 396, 517
Bme1390I CCNGG 1 cut(s) 231
Bme18I GGWCC 1 cut(s) 561
BmgT120I GGNCC 1 cut(s) 561
BmiI GGNNCC 3 cut(s) 300, 510, 571
BmrFI CCNGG 1 cut(s) 231
BmsI GCATC 3 cut(s) 154, 346, 358
BoxI GACNNNNGTC 1 cut(s) 203
Bpu14I TTCGAA 2 cut(s) 42, 85
BsaAI YACGTR 1 cut(s) 115
BsaI GGTCTC 1 cut(s) 211
BsaJI CCNNGG 3 cut(s) 9, 230, 293
BsaWI WCCGGW 1 cut(s) 193
Bse118I RCCGGY 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 601
Bse21I CCTNAGG 1 cut(s) 126
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 3 cut(s) 9, 230, 293
BseGI GGATG 4 cut(s) 323, 361, 441, 539
BseMII CTCAG 1 cut(s) 671
BseNI ACTGG 1 cut(s) 601
BseRI GAGGAG 1 cut(s) 701
BseXI GCAGC 1 cut(s) 502
BsgI GTGCAG 1 cut(s) 426
Bsh1236I CGCG 1 cut(s) 397
BshNI GGYRCC 2 cut(s) 298, 508
BshTI ACCGGT 1 cut(s) 193
BsiSI CCGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 211
Bso31I GGTCTC 1 cut(s) 211
Bsp119I TTCGAA 2 cut(s) 42, 85
Bsp1286I GDGCHC 1 cut(s) 710
Bsp143I GATC 2 cut(s) 178, 712
BspACI CCGC 1 cut(s) 395
BspCNI CTCAG 1 cut(s) 670
BspFNI CGCG 1 cut(s) 397
BspHI TCATGA 1 cut(s) 276
BspLI GGNNCC 3 cut(s) 300, 510, 571
BspMAI CTGCAG 1 cut(s) 388
BspMI ACCTGC 1 cut(s) 520
BspQI GCTCTTC 2 cut(s) 329, 661
BspT104I TTCGAA 2 cut(s) 42, 85
BspT107I GGYRCC 2 cut(s) 298, 508
BspTNI GGTCTC 1 cut(s) 211
BsrFI RCCGGY 1 cut(s) 193
BsrI ACTGG 1 cut(s) 601
BssAI RCCGGY 1 cut(s) 193
BssECI CCNNGG 3 cut(s) 9, 230, 293
BssMI GATC 2 cut(s) 178, 712
BssSI CACGAG 1 cut(s) 402
BssT1I CCWWGG 2 cut(s) 9, 293
Bst2BI CACGAG 1 cut(s) 402
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 312
Bst6I CTCTTC 2 cut(s) 329, 661
BstBAI YACGTR 1 cut(s) 115
BstBI TTCGAA 2 cut(s) 42, 85
BstDEI CTNAG 2 cut(s) 126, 657
BstF5I GGATG 4 cut(s) 323, 361, 441, 539
BstFNI CGCG 1 cut(s) 397
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 2 cut(s) 181, 715
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 2 cut(s) 178, 712
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstNI CCWGG 1 cut(s) 231
BstPAI GACNNNNGTC 1 cut(s) 203
BstSCI CCNGG 1 cut(s) 229
BstSFI CTRYAG 1 cut(s) 384
BstSNI TACGTA 1 cut(s) 115
BstUI CGCG 1 cut(s) 397
BstV1I GCAGC 1 cut(s) 502
Bsu36I CCTNAGG 1 cut(s) 126
BsuI GTATCC 1 cut(s) 132
BtsCI GGATG 4 cut(s) 323, 361, 441, 539
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 1 cut(s) 588
BveI ACCTGC 1 cut(s) 520
CciI TCATGA 1 cut(s) 276
CfoI GCGC 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 561
CseI GACGC 1 cut(s) 386
Csp6I GTAC 6 cut(s) 112, 191, 290, 299, 389, 509
CspAI ACCGGT 1 cut(s) 193
CviAII CATG 1 cut(s) 277
CviJI RGCY 7 cut(s) 284, 394, 570, 646, 671, 708, 735
CviKI_1 RGCY 7 cut(s) 284, 394, 570, 646, 671, 708, 735
CviQI GTAC 6 cut(s) 112, 191, 290, 299, 389, 509
DdeI CTNAG 2 cut(s) 126, 657
DpnI GATC 2 cut(s) 180, 714
DpnII GATC 2 cut(s) 178, 712
Eam1104I CTCTTC 2 cut(s) 329, 661
EarI CTCTTC 2 cut(s) 329, 661
Eco105I TACGTA 1 cut(s) 115
Eco130I CCWWGG 2 cut(s) 9, 293
Eco24I GRGCYC 1 cut(s) 710
Eco31I GGTCTC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 561
Eco81I CCTNAGG 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 229
EcoT14I CCWWGG 2 cut(s) 9, 293
EcoT38I GRGCYC 1 cut(s) 710
ErhI CCWWGG 2 cut(s) 9, 293
FaeI CATG 1 cut(s) 280
FaiI YATR 6 cut(s) 56, 162, 227, 278, 492, 554
FatI CATG 1 cut(s) 276
FbaI TGATCA 2 cut(s) 178, 712
Fnu4HI GCNGC 2 cut(s) 395, 516
FokI GGATG 4 cut(s) 310, 368, 448, 526
FriOI GRGCYC 1 cut(s) 710
Fsp4HI GCNGC 2 cut(s) 395, 516
FspBI CTAG 4 cut(s) 294, 372, 417, 446
GlaI GCGC 1 cut(s) 28
GluI GCNGC 2 cut(s) 395, 516
HapII CCGG 1 cut(s) 194
HgaI GACGC 1 cut(s) 386
HhaI GCGC 1 cut(s) 29
Hin1II CATG 1 cut(s) 280
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HinfI GANTC 3 cut(s) 215, 241, 273
HpaII CCGG 1 cut(s) 194
HphI GGTGA 2 cut(s) 142, 208
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 4 cut(s) 211, 660, 712, 725
Hpy188III TCNNGA 3 cut(s) 277, 347, 422
Hpy8I GTNNAC 1 cut(s) 451
Hpy99I CGWCG 1 cut(s) 725
HpyAV CCTTC 4 cut(s) 196, 229, 274, 483
HpyCH4III ACNGT 1 cut(s) 312
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 7 cut(s) 145, 359, 386, 407, 490, 607, 630
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 2 cut(s) 126, 657
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 1 cut(s) 280
HspAI GCGC 1 cut(s) 27
KpnI GGTACC 2 cut(s) 302, 512
Ksp22I TGATCA 2 cut(s) 178, 712
Kzo9I GATC 2 cut(s) 178, 712
LguI GCTCTTC 2 cut(s) 329, 661
LmnI GCTCC 1 cut(s) 575
Lsp1109I GCAGC 1 cut(s) 502
LweI GCATC 3 cut(s) 154, 346, 358
MaeI CTAG 4 cut(s) 294, 372, 417, 446
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 2 cut(s) 196, 312
MalI GATC 2 cut(s) 180, 714
MboI GATC 2 cut(s) 178, 712
MboII GAAGA 6 cut(s) 68, 312, 346, 675, 678, 703
MhlI GDGCHC 1 cut(s) 710
MluCI AATT 2 cut(s) 44, 459
MmeI TCCRAC 1 cut(s) 703
MnlI CCTC 9 cut(s) 88, 132, 177, 411, 498, 636, 679, 697, 719
MroXI GAANNNNTTC 1 cut(s) 379
MspI CCGG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 231
MvnI CGCG 1 cut(s) 397
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 2 cut(s) 178, 712
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 3 cut(s) 300, 510, 571
NmuCI GTSAC 1 cut(s) 196
NspV TTCGAA 2 cut(s) 42, 85
PagI TCATGA 1 cut(s) 276
PciSI GCTCTTC 2 cut(s) 329, 661
PdmI GAANNNNTTC 1 cut(s) 379
PfeI GAWTC 3 cut(s) 215, 241, 273
PinAI ACCGGT 1 cut(s) 193
PkrI GCNGC 2 cut(s) 396, 517
Ppu21I YACGTR 1 cut(s) 115
PshAI GACNNNNGTC 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 3 cut(s) 300, 510, 571
PspPI GGNCC 1 cut(s) 561
PstI CTGCAG 1 cut(s) 388
RsaI GTAC 6 cut(s) 113, 192, 291, 300, 390, 510
RsaNI GTAC 6 cut(s) 112, 191, 290, 299, 389, 509
SapI GCTCTTC 2 cut(s) 329, 661
SatI GCNGC 2 cut(s) 395, 516
Sau3AI GATC 2 cut(s) 178, 712
Sau96I GGNCC 1 cut(s) 561
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 1 cut(s) 710
SfaNI GCATC 3 cut(s) 154, 346, 358
SfcI CTRYAG 1 cut(s) 384
SfuI TTCGAA 2 cut(s) 42, 85
SinI GGWCC 1 cut(s) 561
SnaBI TACGTA 1 cut(s) 115
SpeI ACTAGT 1 cut(s) 445
Sse9I AATT 2 cut(s) 44, 459
SsiI CCGC 1 cut(s) 395
SspMI CTAG 4 cut(s) 294, 372, 417, 446
StyD4I CCNGG 1 cut(s) 229
StyI CCWWGG 2 cut(s) 9, 293
TaaI ACNGT 1 cut(s) 312
TaiI ACGT 1 cut(s) 117
TaqI TCGA 2 cut(s) 42, 85
TasI AATT 2 cut(s) 44, 459
TatI WGTACW 1 cut(s) 388
TauI GCSGC 1 cut(s) 397
TfiI GAWTC 3 cut(s) 215, 241, 273
TscAI CASTG 1 cut(s) 588
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 1 cut(s) 515
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 3 cut(s) 228, 293, 312
TspGWI ACGGA 1 cut(s) 709
TspRI CASTG 1 cut(s) 588
VpaK11BI GGWCC 1 cut(s) 561
XapI RAATTY 1 cut(s) 44
XmaJI CCTAGG 1 cut(s) 293
XmnI GAANNNNTTC 1 cut(s) 379
XspI CTAG 4 cut(s) 294, 372, 417, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.