Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007546.1

Orthogroup ID

OG0010526

Physical Location & Seq

Genomic Coordinates Reverse (-)

51949 .. 53165

Gene Structure 1217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007546.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgttctccaaggaactgagaagcgcaccaaagtcattcgaatttgaaaacagacgacaatcgcaaatgtatcctaaggtgagagtgagggtgcatcaacaagaaaatcatattcctccacaaaatgatcacaagagagtaccagtgacgaaggtctctgatgaatctctatctataccagtgaaggagactcaaggctgttctctaccattgaaacccagaatcatgaaggcttctgtacctaaggtaccagcaggacagccactttcttcatccaaagagaagagcggacgtcttgacaaggatgcaaaaccagatgttagagcttgttctgcagtacagccgcgtcctcgtgcagtcttatctagtcctgacaatgatgggatgattggactagtaaacaagctaattgataagcaaccttctgctttcaaggtgcctaacacaaaggagagggtacctgctgcccaaaggcaacagagtaagacatccccaagtcctatgcgcatgaccaaaggctccaatagaccagtgtctaacaagactggtcttgtgcaaagtaaagtgcaaaagaccatgattggaaaacagcagcaagcaagtgttggaatggggaaatcaatattcactacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

23.33

Weight (kDa)

10.55

Isoelectric Point (pI)

60.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010526)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g20360 FvH4_2g20360 FvH4_2g20360 FvH4_2g20360 FvH4_2g20360
malus_domestica	MD00G1060200.v1.1
prunus_persica	Prupe.8G216000_v2.0.a1
pyrus_communis	pycom10g15280
rosa_chinensis	RchiOBHm_Chr6g0286731
rosa_laevigata	RLG00000012547
rosa_multiflora	Rmu_sc0007546.1_g000009
rosa_roxburghii	Rroxscaffold_7G00182060
rosa_rugosa	Rorug06G0182400 Rorug06G0182500 Rorug06G0182600 Rorug06G0182700
rosa_samantha	Rh6AG295100 Rh6BG299000 Rh6CG299000 Rh6DG290900
rosa_wichuraiana	Rw6G025400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	295
Acc16I	TGCGCA	1 cut(s)	506
Acc36I	ACCTGC	1 cut(s)	469
Acc65I	GGTACC	2 cut(s)	247, 457
AccB1I	GGYRCC	3 cut(s)	247, 436, 457
AccBSI	CCGCTC	1 cut(s)	288
AccII	CGCG	1 cut(s)	346
AciI	CCGC	2 cut(s)	288, 344
AcsI	RAATTY	1 cut(s)	41
AcyI	GRCGYC	1 cut(s)	292
AfaI	GTAC	5 cut(s)	141, 240, 249, 339, 459
AgsI	TTSAA	3 cut(s)	47, 214, 433
AhlI	ACTAGT	1 cut(s)	394
AluBI	AGCT	2 cut(s)	326, 406
AluI	AGCT	2 cut(s)	326, 406
Alw26I	GTCTC	2 cut(s)	160, 182
ApeKI	GCWGC	2 cut(s)	464, 592
ApoI	RAATTY	1 cut(s)	41
Asp718I	GGTACC	2 cut(s)	247, 457
AspLEI	GCGC	2 cut(s)	26, 507
AsuHPI	GGTGA	1 cut(s)	91
AsuII	TTCGAA	1 cut(s)	39
AxyI	CCTNAGG	2 cut(s)	75, 243
BanI	GGYRCC	3 cut(s)	247, 436, 457
BauI	CACGAG	1 cut(s)	351
BbvI	GCAGC	2 cut(s)	451, 604
BccI	CCATC	1 cut(s)	374
BciVI	GTATCC	1 cut(s)	81
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	160, 182
BcuI	ACTAGT	1 cut(s)	394
BfaI	CTAG	2 cut(s)	366, 395
BfmI	CTRYAG	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	469
BfuI	GTATCC	1 cut(s)	81
BisI	GCNGC	3 cut(s)	344, 465, 593
BlsI	GCNGC	3 cut(s)	345, 466, 594
BmiI	GGNNCC	4 cut(s)	249, 438, 459, 520
BmsI	GCATC	2 cut(s)	103, 295
BoxI	GACNNNNGTC	2 cut(s)	152, 532
Bpu14I	TTCGAA	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	292
BsaI	GGTCTC	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	9
Bse1I	ACTGG	4 cut(s)	143, 179, 530, 550
Bse21I	CCTNAGG	2 cut(s)	75, 243
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	4 cut(s)	272, 310, 390, 488
BseMII	CTCAG	1 cut(s)	8
BseNI	ACTGG	4 cut(s)	143, 179, 530, 550
BseXI	GCAGC	2 cut(s)	451, 604
BsgI	GTGCAG	1 cut(s)	375
Bsh1236I	CGCG	1 cut(s)	346
BshNI	GGYRCC	3 cut(s)	247, 436, 457
BsmAI	GTCTC	2 cut(s)	160, 182
Bso31I	GGTCTC	1 cut(s)	160
Bsp119I	TTCGAA	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	2 cut(s)	288, 344
BspCNI	CTCAG	1 cut(s)	9
BspFNI	CGCG	1 cut(s)	346
BspHI	TCATGA	1 cut(s)	225
BspLI	GGNNCC	4 cut(s)	249, 438, 459, 520
BspMAI	CTGCAG	1 cut(s)	337
BspMI	ACCTGC	1 cut(s)	469
BspQI	GCTCTTC	1 cut(s)	278
BspT104I	TTCGAA	1 cut(s)	39
BspT107I	GGYRCC	3 cut(s)	247, 436, 457
BspTNI	GGTCTC	1 cut(s)	160
BsrBI	CCGCTC	1 cut(s)	288
BsrI	ACTGG	4 cut(s)	143, 179, 530, 550
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	1 cut(s)	127
BssNI	GRCGYC	1 cut(s)	292
BssSI	CACGAG	1 cut(s)	351
BssT1I	CCWWGG	1 cut(s)	9
Bst2BI	CACGAG	1 cut(s)	351
Bst6I	CTCTTC	1 cut(s)	278
BstACI	GRCGYC	1 cut(s)	292
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	597
BstDEI	CTNAG	3 cut(s)	17, 75, 243
BstF5I	GGATG	4 cut(s)	272, 310, 390, 488
BstFNI	CGCG	1 cut(s)	346
BstHHI	GCGC	2 cut(s)	26, 507
BstKTI	GATC	1 cut(s)	130
BstMAI	GTCTC	2 cut(s)	160, 182
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstPAI	GACNNNNGTC	2 cut(s)	152, 532
BstSFI	CTRYAG	1 cut(s)	333
BstUI	CGCG	1 cut(s)	346
BstV1I	GCAGC	2 cut(s)	451, 604
Bsu36I	CCTNAGG	2 cut(s)	75, 243
BsuI	GTATCC	1 cut(s)	81
BtsCI	GGATG	4 cut(s)	272, 310, 390, 488
BtsIMutI	CAGTG	3 cut(s)	150, 186, 537
BveI	ACCTGC	1 cut(s)	469
Cac8I	GCNNGC	1 cut(s)	597
CciI	TCATGA	1 cut(s)	225
CfoI	GCGC	2 cut(s)	26, 507
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	5 cut(s)	140, 239, 248, 338, 458
CviAII	CATG	3 cut(s)	226, 508, 577
CviJI	RGCY	7 cut(s)	198, 233, 262, 326, 343, 406, 519
CviKI_1	RGCY	7 cut(s)	198, 233, 262, 326, 343, 406, 519
CviQI	GTAC	5 cut(s)	140, 239, 248, 338, 458
DdeI	CTNAG	3 cut(s)	17, 75, 243
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	160
Eco81I	CCTNAGG	2 cut(s)	75, 243
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	3 cut(s)	229, 511, 580
FaiI	YATR	6 cut(s)	111, 176, 227, 503, 509, 578
FatI	CATG	3 cut(s)	225, 507, 576
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	3 cut(s)	344, 465, 593
FokI	GGATG	4 cut(s)	259, 317, 397, 475
Fsp4HI	GCNGC	3 cut(s)	344, 465, 593
FspAI	RTGCGCAY	1 cut(s)	506
FspBI	CTAG	2 cut(s)	366, 395
FspI	TGCGCA	1 cut(s)	506
GlaI	GCGC	2 cut(s)	25, 506
GluI	GCNGC	3 cut(s)	344, 465, 593
HgaI	GACGC	1 cut(s)	335
HhaI	GCGC	2 cut(s)	26, 507
Hin1I	GRCGYC	1 cut(s)	292
Hin1II	CATG	3 cut(s)	229, 511, 580
Hin6I	GCGC	2 cut(s)	24, 505
HinP1I	GCGC	2 cut(s)	24, 505
HinfI	GANTC	3 cut(s)	164, 190, 222
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	3 cut(s)	226, 296, 371
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	4 cut(s)	145, 178, 223, 432
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	6 cut(s)	94, 308, 335, 356, 556, 568
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	3 cut(s)	17, 75, 243
HpySE526I	ACGT	1 cut(s)	292
Hsp92I	GRCGYC	1 cut(s)	292
Hsp92II	CATG	3 cut(s)	229, 511, 580
HspAI	GCGC	2 cut(s)	24, 505
KpnI	GGTACC	2 cut(s)	251, 461
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	127
LguI	GCTCTTC	1 cut(s)	278
LmnI	GCTCC	1 cut(s)	524
Lsp1109I	GCAGC	2 cut(s)	451, 604
LweI	GCATC	2 cut(s)	103, 295
MaeI	CTAG	2 cut(s)	366, 395
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	1 cut(s)	129
MbiI	CCGCTC	1 cut(s)	288
MboI	GATC	1 cut(s)	127
MboII	GAAGA	2 cut(s)	261, 295
MluCI	AATT	2 cut(s)	41, 408
MlyI	GAGTC	1 cut(s)	184
MmeI	TCCRAC	1 cut(s)	586
MnlI	CCTC	4 cut(s)	81, 126, 360, 447
MvnI	CGCG	1 cut(s)	346
MwoI	GCNNNNNNNGC	1 cut(s)	332
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	3 cut(s)	229, 511, 580
NlaIV	GGNNCC	4 cut(s)	249, 438, 459, 520
NmuCI	GTSAC	1 cut(s)	145
NsbI	TGCGCA	1 cut(s)	506
NspV	TTCGAA	1 cut(s)	39
PagI	TCATGA	1 cut(s)	225
PciSI	GCTCTTC	1 cut(s)	278
PfeI	GAWTC	2 cut(s)	164, 222
PkrI	GCNGC	3 cut(s)	345, 466, 594
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PshAI	GACNNNNGTC	2 cut(s)	152, 532
PspN4I	GGNNCC	4 cut(s)	249, 438, 459, 520
PstI	CTGCAG	1 cut(s)	337
RsaI	GTAC	5 cut(s)	141, 240, 249, 339, 459
RsaNI	GTAC	5 cut(s)	140, 239, 248, 338, 458
SapI	GCTCTTC	1 cut(s)	278
SatI	GCNGC	3 cut(s)	344, 465, 593
Sau3AI	GATC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	184
SfaNI	GCATC	2 cut(s)	103, 295
SfcI	CTRYAG	1 cut(s)	333
SfuI	TTCGAA	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
SpeI	ACTAGT	1 cut(s)	394
Sse9I	AATT	2 cut(s)	41, 408
SsiI	CCGC	2 cut(s)	288, 344
SspI	AATATT	1 cut(s)	624
SspMI	CTAG	2 cut(s)	366, 395
StyI	CCWWGG	1 cut(s)	9
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	1 cut(s)	39
TasI	AATT	2 cut(s)	41, 408
TatI	WGTACW	1 cut(s)	337
TauI	GCSGC	1 cut(s)	346
TfiI	GAWTC	2 cut(s)	164, 222
TscAI	CASTG	3 cut(s)	150, 186, 537
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	2 cut(s)	464, 592
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	3 cut(s)	177, 242, 261
TspRI	CASTG	3 cut(s)	150, 186, 537
XapI	RAATTY	1 cut(s)	41
XspI	CTAG	2 cut(s)	366, 395
ZraI	GACGTC	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.