FvH4_2g26121
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
21012319 .. 21016137
3819 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26121.t2

Sequence Viewer

Length: 1407 bp
ATGGCATCTGAGTCAGGATCGTTTAGAGAGGAACGGGACACATTCGGACCCATAAATGTTCCTTCAGACAAGTTATGGGGAGCACAAACTCAGAGGTCCTTGCAGAATTTCGACATTGGAGGCGAGCGGGAACGAATGCCTGAACCTATTATTCGGGCCTTTGGCATCCTCAAAAAATGTGCTGCCAAGGTGAACATGGAGTATGGTCTTGATCAATCTATAGGGAAAGCTATAATGGAAGCTGCCCAAGAAGTGGCTGAGGGAAAGCTAAACCAGCATTTTCCACTTGTTGTGTGGCAAACTGGTAGTGGAACCCAAAGCAACATGAATGCCAATGAGGTCATTGCAAACAGAGCAGCTGAGATACTTGGACATAAGCGTGGTGAGAAGTTCGTGCACCCAAATGACCATGTCAACAAATCACAATCTTCTAATGACACTTTCCCAACTGTCATGCACATTGCAACAGCAATGGAACTAAATTCAAGATTGATACCGAGTTTGAAAGTTTTGCATGCTGCTTTAGATTCAAAGGCTAATGAATTCAAAGACATTGTTAAAATCGGACGCACTCACACGCAAGATGCAACACCTTTGACTCTTGGGCAAGAGTTTAGCGGCTATTCTACACAAGTGATGTATGGGATCGATCGAGTCATGGGTGCTCTTCCCCGAATGTATCAGCTTGCACAGGGCGGCACTGCTGTTGGGACCGGATTGAACACAAAAAAGGGATTTGATGTAAAGATAGCTGCAGCGGTAGCTGAGGAAACAAAGTTACCGTTTGTTACAGCAGAAAACAAGTTTGAAGCCTTGGCGGCCCATGATGCTTTTGTGGAAACTAGTGGAGCCCTAAATACAGTTGCTACTTCTCTGATGAAGATTGGAAATGATATACGTTTCTTAGGAAGTGGTCCACGTTGTGGCCTCGGTGAACTTGGTCTTCCTGAAAACGAGCCTGGAAGCAGCATTATGCCTGGAAAGGTTAATCCTACCCAGTGTGAGGCTCTCACAATGGTTTGTGCTCAGGTCATGGGTAATCATGTGGCCATTACAGTTGGTGGATCAAATGGTCACTTTGAGCTTAATGTATTCAAACCGCTGATGGCTAGTAATCTTCTACACTCTCTAAGGTTACTGGGAGATGCATCTGTCTCATTTGAAAAGAACTGCGTGAAAGGCATTCAAGCCAACAAGGAAAGAATCTCAAAGTTACTTCATGAGTCGCTTATGCTGGTGACATCCTTGAATCCTAAAATTGGTTATGATAATGCCGCAGCAGTTGCAAAGAAAGCCCACAAGGAGGGATCGACTTTGAAGGAAGCTGCATTGAAACTTGATGTGCTAACTAGTGAAGAATTTGACAGTCTTGTGGTGCCTGAGAAGATGATCGGTCCATCTGACTAA

Protein Analysis

469

Amino Acids

50.4

Weight (kDa)

6.38

Isoelectric Point (pI)

27.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lyase_1 PF00206 16 - 151 9.1e-34 Lyase
Lyase_1 PF00206 181 - 375 4.3e-73 Lyase
FumaraseC_C PF10415 441 - 493 3e-23 Fumarase C C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1375
AccB7I CCANNNNNTGG 2 cut(s) 253, 923
AccBSI CCGCTC 1 cut(s) 127
AciI CCGC 7 cut(s) 127, 618, 696, 758, 818, 1100, 1275
AclWI GGATC 4 cut(s) 25, 653, 1072, 1315
AcoI YGGCCR 1 cut(s) 1047
AcsI RAATTY 4 cut(s) 106, 481, 542, 1358
AcuI CTGAAG 1 cut(s) 48
AdeI CACNNNGTG 1 cut(s) 923
AfiI CCNNNNNNNGG 5 cut(s) 253, 923, 1003, 1259, 1303
AhlI ACTAGT 2 cut(s) 842, 1349
AjnI CCWGG 2 cut(s) 958, 976
AluBI AGCT 9 cut(s) 230, 242, 268, 359, 685, 752, 764, 1084, 1325
AluI AGCT 9 cut(s) 230, 242, 268, 359, 685, 752, 764, 1084, 1325
Alw21I GWGCWC 4 cut(s) 85, 399, 667, 1027
Alw26I GTCTC 1 cut(s) 1159
Alw44I GTGCAC 1 cut(s) 395
AlwI GGATC 4 cut(s) 25, 653, 1072, 1315
AoxI GGCC 4 cut(s) 156, 819, 925, 1047
ApaLI GTGCAC 1 cut(s) 395
ApeKI GCWGC 9 cut(s) 182, 242, 356, 518, 752, 755, 966, 1277, 1325
ApoI RAATTY 4 cut(s) 106, 481, 542, 1358
AspS9I GGNCC 7 cut(s) 47, 96, 156, 711, 820, 914, 1394
AsuHPI GGTGA 4 cut(s) 202, 395, 944, 1249
AvaII GGWCC 5 cut(s) 47, 96, 711, 914, 1394
BaeGI GKGCMC 1 cut(s) 399
BalI TGGCCA 1 cut(s) 1049
BanI GGYRCC 1 cut(s) 1375
BanII GRGCYC 1 cut(s) 853
BbsI GAAGAC 1 cut(s) 935
Bbv12I GWGCWC 4 cut(s) 85, 399, 667, 1027
BbvCI CCTCAGC 2 cut(s) 258, 765
BbvI GCAGC 9 cut(s) 169, 229, 368, 505, 739, 767, 978, 1289, 1312
BccI CCATC 2 cut(s) 1099, 1405
BciT130I CCWGG 2 cut(s) 960, 978
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 1159
BcuI ACTAGT 2 cut(s) 842, 1349
BfaI CTAG 3 cut(s) 843, 1110, 1350
BfmI CTRYAG 2 cut(s) 219, 753
BglI GCCNNNNNGGC 1 cut(s) 818
Bme1390I CCNGG 2 cut(s) 960, 978
Bme18I GGWCC 5 cut(s) 47, 96, 711, 914, 1394
BmgT120I GGNCC 7 cut(s) 47, 96, 156, 711, 820, 914, 1394
BmiI GGNNCC 5 cut(s) 49, 313, 712, 850, 1377
BmrFI CCNGG 2 cut(s) 960, 978
BmrI ACTGGG 2 cut(s) 991, 1148
BmsI GCATC 6 cut(s) 14, 174, 574, 817, 1135, 1157
BmuI ACTGGG 2 cut(s) 991, 1148
BpiI GAAGAC 1 cut(s) 935
Bpu10I CCTNAGC 3 cut(s) 258, 765, 1026
Bsa29I ATCGAT 1 cut(s) 648
BsaJI CCNNGG 3 cut(s) 186, 813, 928
BsaWI WCCGGW 1 cut(s) 713
Bsc4I CCNNNNNNNGG 5 cut(s) 253, 923, 1003, 1259, 1303
Bse1I ACTGG 3 cut(s) 307, 997, 1143
Bse3DI GCAATG 3 cut(s) 342, 459, 477
BseBI CCWGG 2 cut(s) 960, 978
BseCI ATCGAT 1 cut(s) 648
BseDI CCNNGG 3 cut(s) 186, 813, 928
BseGI GGATG 2 cut(s) 165, 1241
BseLI CCNNNNNNNGG 5 cut(s) 253, 923, 1003, 1259, 1303
BseMI GCAATG 3 cut(s) 342, 459, 477
BseMII CTCAG 6 cut(s) 104, 249, 351, 756, 1040, 1371
BseNI ACTGG 3 cut(s) 307, 997, 1143
BseSI GKGCMC 1 cut(s) 399
BseXI GCAGC 9 cut(s) 169, 229, 368, 505, 739, 767, 978, 1289, 1312
Bsh1285I CGRYCG 1 cut(s) 652
BshFI GGCC 4 cut(s) 158, 821, 927, 1049
BshNI GGYRCC 1 cut(s) 1375
BshVI ATCGAT 1 cut(s) 648
BsiEI CGRYCG 1 cut(s) 652
BsiHKAI GWGCWC 4 cut(s) 85, 399, 667, 1027
BsiSI CCGG 1 cut(s) 714
BslFI GGGAC 2 cut(s) 50, 724
BslI CCNNNNNNNGG 5 cut(s) 253, 923, 1003, 1259, 1303
BsmAI GTCTC 1 cut(s) 1159
BsmFI GGGAC 2 cut(s) 50, 724
BsmI GAATGC 3 cut(s) 141, 334, 1182
BsnI GGCC 4 cut(s) 158, 821, 927, 1049
Bsp1286I GDGCHC 5 cut(s) 85, 399, 667, 853, 1027
Bsp143I GATC 7 cut(s) 17, 211, 645, 649, 1064, 1307, 1389
BspACI CCGC 7 cut(s) 127, 618, 696, 758, 818, 1100, 1275
BspANI GGCC 4 cut(s) 158, 821, 927, 1049
BspCNI CTCAG 6 cut(s) 103, 250, 352, 757, 1039, 1372
BspDI ATCGAT 1 cut(s) 648
BspHI TCATGA 1 cut(s) 1219
BspLI GGNNCC 5 cut(s) 49, 313, 712, 850, 1377
BspMAI CTGCAG 1 cut(s) 757
BspPI GGATC 4 cut(s) 25, 653, 1072, 1315
BspQI GCTCTTC 1 cut(s) 672
BspT107I GGYRCC 1 cut(s) 1375
BsrBI CCGCTC 1 cut(s) 127
BsrDI GCAATG 3 cut(s) 342, 459, 477
BsrI ACTGG 3 cut(s) 307, 997, 1143
BssECI CCNNGG 3 cut(s) 186, 813, 928
BssMI GATC 7 cut(s) 17, 211, 645, 649, 1064, 1307, 1389
BssT1I CCWWGG 2 cut(s) 186, 813
Bst2UI CCWGG 2 cut(s) 960, 978
Bst4CI ACNGT 5 cut(s) 451, 783, 862, 1057, 1367
Bst6I CTCTTC 1 cut(s) 672
BstAPI GCANNNNNTGC 1 cut(s) 1283
BstC8I GCNNGC 3 cut(s) 125, 516, 687
BstDEI CTNAG 9 cut(s) 9, 90, 258, 360, 765, 904, 1026, 1130, 1380
BstF5I GGATG 2 cut(s) 165, 1241
BstKTI GATC 7 cut(s) 20, 214, 648, 652, 1067, 1310, 1392
BstMAI GTCTC 1 cut(s) 1159
BstMBI GATC 7 cut(s) 17, 211, 645, 649, 1064, 1307, 1389
BstMCI CGRYCG 1 cut(s) 652
BstMWI GCNNNNNNNGC 8 cut(s) 274, 353, 761, 818, 827, 1179, 1283, 1292
BstNI CCWGG 2 cut(s) 960, 978
BstNSI RCATGY 1 cut(s) 518
BstSCI CCNGG 2 cut(s) 958, 976
BstSFI CTRYAG 2 cut(s) 219, 753
BstSLI GKGCMC 1 cut(s) 399
BstV1I GCAGC 9 cut(s) 169, 229, 368, 505, 739, 767, 978, 1289, 1312
BstV2I GAAGAC 1 cut(s) 935
Bsu15I ATCGAT 1 cut(s) 648
BsuRI GGCC 4 cut(s) 158, 821, 927, 1049
BsuTUI ATCGAT 1 cut(s) 648
BtsCI GGATG 2 cut(s) 165, 1241
BtsI GCAGTG 1 cut(s) 699
BtsIMutI CAGTG 2 cut(s) 699, 1004
Cac8I GCNNGC 3 cut(s) 125, 516, 687
CciI TCATGA 1 cut(s) 1219
Cfr13I GGNCC 7 cut(s) 47, 96, 156, 711, 820, 914, 1394
ClaI ATCGAT 1 cut(s) 648
CseI GACGC 1 cut(s) 576
DdeI CTNAG 9 cut(s) 9, 90, 258, 360, 765, 904, 1026, 1130, 1380
DpnI GATC 7 cut(s) 19, 213, 647, 651, 1066, 1309, 1391
DpnII GATC 7 cut(s) 17, 211, 645, 649, 1064, 1307, 1389
DraIII CACNNNGTG 1 cut(s) 923
EaeI YGGCCR 1 cut(s) 1047
Eam1104I CTCTTC 1 cut(s) 672
EarI CTCTTC 1 cut(s) 672
Eco130I CCWWGG 2 cut(s) 186, 813
Eco24I GRGCYC 1 cut(s) 853
Eco47I GGWCC 5 cut(s) 47, 96, 711, 914, 1394
Eco57I CTGAAG 1 cut(s) 48
EcoO109I RGGNCCY 1 cut(s) 96
EcoRI GAATTC 1 cut(s) 542
EcoRII CCWGG 2 cut(s) 958, 976
EcoT14I CCWWGG 2 cut(s) 186, 813
EcoT22I ATGCAT 1 cut(s) 1150
EcoT38I GRGCYC 1 cut(s) 853
ErhI CCWWGG 2 cut(s) 186, 813
FaqI GGGAC 2 cut(s) 50, 724
FauI CCCGC 1 cut(s) 120
FbaI TGATCA 1 cut(s) 211
FokI GGATG 2 cut(s) 152, 1228
FriOI GRGCYC 1 cut(s) 853
FspBI CTAG 3 cut(s) 843, 1110, 1350
HaeIII GGCC 4 cut(s) 158, 821, 927, 1049
HapII CCGG 1 cut(s) 714
HgaI GACGC 1 cut(s) 576
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 7 cut(s) 11, 527, 598, 654, 1203, 1223, 1249
HpaII CCGG 1 cut(s) 714
HphI GGTGA 4 cut(s) 202, 395, 944, 1249
Hpy166II GTNNAC 5 cut(s) 193, 397, 415, 917, 935
Hpy188I TCNGA 7 cut(s) 10, 47, 67, 93, 566, 876, 1402
Hpy188III TCNNGA 5 cut(s) 15, 209, 486, 947, 1220
Hpy8I GTNNAC 5 cut(s) 193, 397, 415, 917, 935
HpyAV CCTTC 2 cut(s) 72, 1312
HpyCH4III ACNGT 5 cut(s) 451, 783, 862, 1057, 1367
HpyCH4IV ACGT 2 cut(s) 898, 919
HpyF10VI GCNNNNNNNGC 8 cut(s) 274, 353, 761, 818, 827, 1179, 1283, 1292
HpyF3I CTNAG 9 cut(s) 9, 90, 258, 360, 765, 904, 1026, 1130, 1380
HpySE526I ACGT 2 cut(s) 898, 919
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 7 cut(s) 17, 211, 645, 649, 1064, 1307, 1389
LguI GCTCTTC 1 cut(s) 672
LmnI GCTCC 2 cut(s) 80, 848
Lsp1109I GCAGC 9 cut(s) 169, 229, 368, 505, 739, 767, 978, 1289, 1312
LweI GCATC 6 cut(s) 14, 174, 574, 817, 1135, 1157
MaeI CTAG 3 cut(s) 843, 1110, 1350
MaeII ACGT 2 cut(s) 898, 919
MaeIII GTNAC 6 cut(s) 777, 787, 1073, 1134, 1212, 1237
MalI GATC 7 cut(s) 19, 213, 647, 651, 1066, 1309, 1391
MbiI CCGCTC 1 cut(s) 127
MboI GATC 7 cut(s) 17, 211, 645, 649, 1064, 1307, 1389
MboII GAAGA 7 cut(s) 420, 659, 892, 935, 1109, 1367, 1396
MhlI GDGCHC 5 cut(s) 85, 399, 667, 853, 1027
MlsI TGGCCA 1 cut(s) 1049
MluCI AATT 5 cut(s) 106, 481, 542, 1257, 1358
MluNI TGGCCA 1 cut(s) 1049
MlyI GAGTC 4 cut(s) 20, 592, 663, 1232
Mox20I TGGCCA 1 cut(s) 1049
Mph1103I ATGCAT 1 cut(s) 1150
MscI TGGCCA 1 cut(s) 1049
MseI TTAA 3 cut(s) 558, 987, 1086
MslI CAYNNNNRTG 2 cut(s) 378, 402
Msp20I TGGCCA 1 cut(s) 1049
MspA1I CMGCKG 3 cut(s) 359, 758, 1102
MspI CCGG 1 cut(s) 714
MspR9I CCNGG 2 cut(s) 960, 978
Mva1269I GAATGC 3 cut(s) 141, 334, 1182
MvaI CCWGG 2 cut(s) 960, 978
MwoI GCNNNNNNNGC 8 cut(s) 274, 353, 761, 818, 827, 1179, 1283, 1292
NdeII GATC 7 cut(s) 17, 211, 645, 649, 1064, 1307, 1389
NlaIV GGNNCC 5 cut(s) 49, 313, 712, 850, 1377
NmuCI GTSAC 2 cut(s) 1073, 1237
NsiI ATGCAT 1 cut(s) 1150
NspI RCATGY 1 cut(s) 518
PaeI GCATGC 1 cut(s) 518
PagI TCATGA 1 cut(s) 1219
PciSI GCTCTTC 1 cut(s) 672
PctI GAATGC 3 cut(s) 141, 334, 1182
PfeI GAWTC 3 cut(s) 527, 1203, 1249
PflFI GACNNNGTC 1 cut(s) 410
PflMI CCANNNNNTGG 2 cut(s) 253, 923
Ple19I CGATCG 1 cut(s) 652
PleI GAGTC 4 cut(s) 19, 592, 662, 1231
PpsI GAGTC 4 cut(s) 19, 592, 662, 1231
PpuMI RGGWCCY 1 cut(s) 96
Psp5II RGGWCCY 1 cut(s) 96
Psp6I CCWGG 2 cut(s) 958, 976
PspGI CCWGG 2 cut(s) 958, 976
PspN4I GGNNCC 5 cut(s) 49, 313, 712, 850, 1377
PspPI GGNCC 7 cut(s) 47, 96, 156, 711, 820, 914, 1394
PspPPI RGGWCCY 1 cut(s) 96
PstI CTGCAG 1 cut(s) 757
PsyI GACNNNGTC 1 cut(s) 410
PvuI CGATCG 1 cut(s) 652
PvuII CAGCTG 1 cut(s) 359
RseI CAYNNNNRTG 2 cut(s) 378, 402
SapI GCTCTTC 1 cut(s) 672
SaqAI TTAA 3 cut(s) 558, 987, 1086
Sau3AI GATC 7 cut(s) 17, 211, 645, 649, 1064, 1307, 1389
Sau96I GGNCC 7 cut(s) 47, 96, 156, 711, 820, 914, 1394
SchI GAGTC 4 cut(s) 20, 592, 663, 1232
ScrFI CCNGG 2 cut(s) 960, 978
SduI GDGCHC 5 cut(s) 85, 399, 667, 853, 1027
SfaNI GCATC 6 cut(s) 14, 174, 574, 817, 1135, 1157
SfcI CTRYAG 2 cut(s) 219, 753
SinI GGWCC 5 cut(s) 47, 96, 711, 914, 1394
SmiMI CAYNNNNRTG 2 cut(s) 378, 402
SpeI ACTAGT 2 cut(s) 842, 1349
SphI GCATGC 1 cut(s) 518
Sse9I AATT 5 cut(s) 106, 481, 542, 1257, 1358
SsiI CCGC 7 cut(s) 127, 618, 696, 758, 818, 1100, 1275
SspMI CTAG 3 cut(s) 843, 1110, 1350
StyD4I CCNGG 2 cut(s) 958, 976
StyI CCWWGG 2 cut(s) 186, 813
TaaI ACNGT 5 cut(s) 451, 783, 862, 1057, 1367
TaiI ACGT 2 cut(s) 901, 922
TaqI TCGA 4 cut(s) 111, 648, 652, 1310
TaqII GACCGA 1 cut(s) 1382
TasI AATT 5 cut(s) 106, 481, 542, 1257, 1358
TauI GCSGC 4 cut(s) 621, 699, 821, 1277
TfiI GAWTC 3 cut(s) 527, 1203, 1249
Tru1I TTAA 3 cut(s) 558, 987, 1086
Tru9I TTAA 3 cut(s) 558, 987, 1086
TscAI CASTG 2 cut(s) 706, 1004
TseFI GTSAC 2 cut(s) 1073, 1237
TseI GCWGC 9 cut(s) 182, 242, 356, 518, 752, 755, 966, 1277, 1325
Tsp45I GTSAC 2 cut(s) 1073, 1237
TspDTI ATGAA 4 cut(s) 341, 555, 893, 1208
TspRI CASTG 2 cut(s) 706, 1004
Tth111I GACNNNGTC 1 cut(s) 410
Van91I CCANNNNNTGG 2 cut(s) 253, 923
VneI GTGCAC 1 cut(s) 395
VpaK11BI GGWCC 5 cut(s) 47, 96, 711, 914, 1394
XapI RAATTY 4 cut(s) 106, 481, 542, 1358
XceI RCATGY 1 cut(s) 518
XcmI CCANNNNNNNNNTGG 2 cut(s) 193, 291
XspI CTAG 3 cut(s) 843, 1110, 1350
Zsp2I ATGCAT 1 cut(s) 1150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.