Rroxscaffold_7G00173270
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
13344818 .. 13348142
3325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00173270.1

Sequence Viewer

Length: 1341 bp
ATGACATCTGATTCAGCGTCATTTAGAGAGGAACGGGACACATTTGGACCCATAAATGTTCCTTCAGACAAGTTATGGGGAGCGCAGACTCAAAGATCCTTGCAGAATTTCGATATAGGAGGCGAGCGTGAACGAATGCCCGAACCTATTATTCGGGCCTTTGGCGTCCTAAAAAAATGTGCTGCCAAGGTGAACATGGAGTATGGTCTTGATCAATCTATAGGGAAGGCTATAATGGAAGCTGCCCAAGAAGTGGCTGCGGGAAAGCTAAACCAACATTTTCCACTTGTTGTTTGGCAAACTGGTAGTGGAACCCAGAGCAACATGAATGCCAATGAGGTCATTGCAAACAGAGCAGCTGAGATACTTGGCCATAAGCGCGGGGAGAAGTTTGTGCACCCAAATGACCATGTCAACAAATCACAATCTTCTAACGACACTTTCCCAACTGTCATGCACATTGCAGCAGCAATGGAACTAAATTCAAGACTGATACCGAGTTTGAAAGTTTTACATGCTGCTTTAGATTCAAAGGCTAATGAATTCAAAGACATTGTTAAAATTGGACGTACTCACACGCAAGATGCAACACCTTTGACTCTTGGGCAAGAGTTTAGCGGCTATTCTACACAAGTGAAGTATGGAATCGATCGAGTCTTGGGCACTCTTCCCCGAATGTATCAGCTTGCACAGGGCGGTACTGCTGTTGGGACTGGATTGAACACGAAGAAGGGATTTGATGTAAAGATAGCTGCAGCGGTAGCTGAGGAAACAAAGTTACCATTTGTTACAGCAGAAAACAAGTTTGAAGCCTTGGCGGCCCATGATGCTTTTGTGGAAACTAGCGGAGCCCTAAATACAGTTGGTACTTCTCTGATGAAGATTGCAAATGACATACGTTTCTTAGGAAGCGGTCCACGTTGTGGCCTTGGTGAACTTAATCTTCCAGAAAACGAGCCTGGAAGCAGCATTATGCCTGGAAAGGTTAATCCTACCCAGTGTGAGGCTCTCACAATGGTCTGTGCTCAGGTTATGGGTAATCATGTGGCCATTACAGTTGGCGGATCAAATGGTCACTTTGAACTTAACGTATTCAAACCGATGATGGCTAGTAATCTTCTGCATTCTCTAAGGTTACTGGCTGATGCATCTGTCTCATTTGAAAAGAACTGCGTGAAAGGAATTCAAGCCAACAAGGAAAGAATTTCGAAGTTACTTCATGAGTCGTTAATGCTGGTGACCTCCTTGAATCCTGAAGCTGCAATGAAACTTGCTGTGCTAACTAGTGAAGAATTTGATAGTCTTGTGGTGCCTGAGAAGATGATCGGTCCATCTGATTAA

Protein Analysis

446

Amino Acids

48.12

Weight (kDa)

6.33

Isoelectric Point (pI)

26.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lyase_1 PF00206 16 - 346 9.3e-116 Lyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1309
AccB7I CCANNNNNTGG 2 cut(s) 253, 923
AccII CGCG 1 cut(s) 381
AciI CCGC 9 cut(s) 260, 381, 618, 696, 758, 818, 846, 912, 1062
AclWI GGATC 2 cut(s) 90, 1072
AcoI YGGCCR 2 cut(s) 370, 1047
AcsI RAATTY 6 cut(s) 106, 481, 542, 1182, 1203, 1292
AcuI CTGAAG 2 cut(s) 48, 1275
AcyI GRCGYC 1 cut(s) 165
AdeI CACNNNGTG 1 cut(s) 923
AfaI GTAC 3 cut(s) 571, 700, 868
AfiI CCNNNNNNNGG 3 cut(s) 253, 923, 1003
AhlI ACTAGT 1 cut(s) 1283
AjnI CCWGG 2 cut(s) 958, 976
AluBI AGCT 7 cut(s) 242, 268, 359, 685, 752, 764, 1259
AluI AGCT 7 cut(s) 242, 268, 359, 685, 752, 764, 1259
Alw21I GWGCWC 2 cut(s) 399, 1027
Alw26I GTCTC 1 cut(s) 1159
Alw44I GTGCAC 1 cut(s) 395
AlwI GGATC 2 cut(s) 90, 1072
AoxI GGCC 5 cut(s) 156, 370, 819, 925, 1047
ApaLI GTGCAC 1 cut(s) 395
ApoI RAATTY 6 cut(s) 106, 481, 542, 1182, 1203, 1292
AspLEI GCGC 2 cut(s) 85, 381
AspS9I GGNCC 5 cut(s) 47, 156, 820, 914, 1328
AsuHPI GGTGA 3 cut(s) 202, 944, 1249
AsuII TTCGAA 1 cut(s) 1208
AvaII GGWCC 3 cut(s) 47, 914, 1328
BaeGI GKGCMC 2 cut(s) 399, 665
BaeI ACNNNNGTAYC 2 cut(s) 690, 723
BalI TGGCCA 2 cut(s) 372, 1049
BanI GGYRCC 1 cut(s) 1309
BanII GRGCYC 1 cut(s) 853
Bbv12I GWGCWC 2 cut(s) 399, 1027
BbvCI CCTCAGC 1 cut(s) 765
BccI CCATC 2 cut(s) 1099, 1339
BciT130I CCWGG 2 cut(s) 960, 978
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 1159
BcuI ACTAGT 1 cut(s) 1283
BfaI CTAG 3 cut(s) 843, 1110, 1284
BfmI CTRYAG 2 cut(s) 219, 753
BglI GCCNNNNNGGC 1 cut(s) 818
Bme1390I CCNGG 2 cut(s) 960, 978
Bme18I GGWCC 3 cut(s) 47, 914, 1328
BmgT120I GGNCC 5 cut(s) 47, 156, 820, 914, 1328
BmiI GGNNCC 4 cut(s) 49, 313, 850, 1311
BmrFI CCNGG 2 cut(s) 960, 978
BmrI ACTGGG 1 cut(s) 991
BmsI GCATC 4 cut(s) 574, 817, 1135, 1157
BmuI ACTGGG 1 cut(s) 991
Bpu10I CCTNAGC 2 cut(s) 765, 1026
Bpu14I TTCGAA 1 cut(s) 1208
Bsa29I ATCGAT 1 cut(s) 648
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 3 cut(s) 186, 813, 928
Bsc4I CCNNNNNNNGG 3 cut(s) 253, 923, 1003
Bse1I ACTGG 4 cut(s) 307, 718, 997, 1143
Bse3DI GCAATG 4 cut(s) 342, 459, 477, 1269
BseBI CCWGG 2 cut(s) 960, 978
BseCI ATCGAT 1 cut(s) 648
BseDI CCNNGG 3 cut(s) 186, 813, 928
BseLI CCNNNNNNNGG 3 cut(s) 253, 923, 1003
BseMI GCAATG 4 cut(s) 342, 459, 477, 1269
BseMII CTCAG 4 cut(s) 351, 756, 1040, 1305
BseNI ACTGG 4 cut(s) 307, 718, 997, 1143
BseSI GKGCMC 2 cut(s) 399, 665
Bsh1236I CGCG 1 cut(s) 381
Bsh1285I CGRYCG 1 cut(s) 652
BshFI GGCC 5 cut(s) 158, 372, 821, 927, 1049
BshNI GGYRCC 1 cut(s) 1309
BshVI ATCGAT 1 cut(s) 648
BsiEI CGRYCG 1 cut(s) 652
BsiHKAI GWGCWC 2 cut(s) 399, 1027
BslFI GGGAC 2 cut(s) 50, 724
BslI CCNNNNNNNGG 3 cut(s) 253, 923, 1003
BsmAI GTCTC 1 cut(s) 1159
BsmFI GGGAC 2 cut(s) 50, 724
BsmI GAATGC 3 cut(s) 141, 334, 1123
BsnI GGCC 5 cut(s) 158, 372, 821, 927, 1049
Bsp119I TTCGAA 1 cut(s) 1208
Bsp1286I GDGCHC 4 cut(s) 399, 665, 853, 1027
Bsp143I GATC 5 cut(s) 95, 211, 649, 1064, 1323
BspACI CCGC 9 cut(s) 260, 381, 618, 696, 758, 818, 846, 912, 1062
BspANI GGCC 5 cut(s) 158, 372, 821, 927, 1049
BspCNI CTCAG 4 cut(s) 352, 757, 1039, 1306
BspDI ATCGAT 1 cut(s) 648
BspFNI CGCG 1 cut(s) 381
BspHI TCATGA 1 cut(s) 1219
BspLI GGNNCC 4 cut(s) 49, 313, 850, 1311
BspMAI CTGCAG 1 cut(s) 757
BspPI GGATC 2 cut(s) 90, 1072
BspT104I TTCGAA 1 cut(s) 1208
BspT107I GGYRCC 1 cut(s) 1309
BsrDI GCAATG 4 cut(s) 342, 459, 477, 1269
BsrI ACTGG 4 cut(s) 307, 718, 997, 1143
BssECI CCNNGG 3 cut(s) 186, 813, 928
BssMI GATC 5 cut(s) 95, 211, 649, 1064, 1323
BssNI GRCGYC 1 cut(s) 165
BssT1I CCWWGG 3 cut(s) 186, 813, 928
Bst2UI CCWGG 2 cut(s) 960, 978
Bst4CI ACNGT 3 cut(s) 451, 862, 1057
Bst6I CTCTTC 1 cut(s) 672
BstACI GRCGYC 1 cut(s) 165
BstBI TTCGAA 1 cut(s) 1208
BstC8I GCNNGC 2 cut(s) 125, 687
BstDEI CTNAG 6 cut(s) 360, 765, 904, 1026, 1130, 1314
BstEII GGTNACC 1 cut(s) 1237
BstFNI CGCG 1 cut(s) 381
BstHHI GCGC 2 cut(s) 85, 381
BstKTI GATC 5 cut(s) 98, 214, 652, 1067, 1326
BstMAI GTCTC 1 cut(s) 1159
BstMBI GATC 5 cut(s) 95, 211, 649, 1064, 1323
BstMCI CGRYCG 1 cut(s) 652
BstMWI GCNNNNNNNGC 5 cut(s) 353, 378, 761, 818, 827
BstNI CCWGG 2 cut(s) 960, 978
BstNSI RCATGY 1 cut(s) 518
BstPI GGTNACC 1 cut(s) 1237
BstSCI CCNGG 2 cut(s) 958, 976
BstSFI CTRYAG 2 cut(s) 219, 753
BstSLI GKGCMC 2 cut(s) 399, 665
BstUI CGCG 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
Bsu15I ATCGAT 1 cut(s) 648
BsuRI GGCC 5 cut(s) 158, 372, 821, 927, 1049
BsuTUI ATCGAT 1 cut(s) 648
BtsIMutI CAGTG 1 cut(s) 1004
Cac8I GCNNGC 2 cut(s) 125, 687
CciI TCATGA 1 cut(s) 1219
CfoI GCGC 2 cut(s) 85, 381
Cfr13I GGNCC 5 cut(s) 47, 156, 820, 914, 1328
ClaI ATCGAT 1 cut(s) 648
CseI GACGC 2 cut(s) 6, 154
Csp6I GTAC 3 cut(s) 570, 699, 867
CviAII CATG 8 cut(s) 196, 325, 410, 454, 515, 824, 1043, 1220
CviQI GTAC 3 cut(s) 570, 699, 867
DdeI CTNAG 6 cut(s) 360, 765, 904, 1026, 1130, 1314
DpnI GATC 5 cut(s) 97, 213, 651, 1066, 1325
DpnII GATC 5 cut(s) 95, 211, 649, 1064, 1323
DraIII CACNNNGTG 1 cut(s) 923
EaeI YGGCCR 2 cut(s) 370, 1047
Eam1104I CTCTTC 1 cut(s) 672
EarI CTCTTC 1 cut(s) 672
EciI GGCGGA 1 cut(s) 1077
Eco130I CCWWGG 3 cut(s) 186, 813, 928
Eco24I GRGCYC 1 cut(s) 853
Eco47I GGWCC 3 cut(s) 47, 914, 1328
Eco57I CTGAAG 2 cut(s) 48, 1275
Eco91I GGTNACC 1 cut(s) 1237
EcoO65I GGTNACC 1 cut(s) 1237
EcoRI GAATTC 2 cut(s) 542, 1182
EcoRII CCWGG 2 cut(s) 958, 976
EcoT14I CCWWGG 3 cut(s) 186, 813, 928
EcoT22I ATGCAT 1 cut(s) 1150
EcoT38I GRGCYC 1 cut(s) 853
ErhI CCWWGG 3 cut(s) 186, 813, 928
FaeI CATG 8 cut(s) 199, 328, 413, 457, 518, 827, 1046, 1223
FaqI GGGAC 2 cut(s) 50, 724
FatI CATG 8 cut(s) 195, 324, 409, 453, 514, 823, 1042, 1219
FauI CCCGC 2 cut(s) 253, 374
FbaI TGATCA 1 cut(s) 211
FriOI GRGCYC 1 cut(s) 853
FspBI CTAG 3 cut(s) 843, 1110, 1284
GlaI GCGC 2 cut(s) 84, 380
HaeIII GGCC 5 cut(s) 158, 372, 821, 927, 1049
HgaI GACGC 2 cut(s) 6, 154
HhaI GCGC 2 cut(s) 85, 381
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 8 cut(s) 199, 328, 413, 457, 518, 827, 1046, 1223
Hin6I GCGC 2 cut(s) 83, 379
HinP1I GCGC 2 cut(s) 83, 379
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 8 cut(s) 11, 88, 527, 598, 645, 654, 1223, 1249
HphI GGTGA 3 cut(s) 202, 944, 1249
Hpy166II GTNNAC 6 cut(s) 131, 193, 397, 415, 917, 935
Hpy188I TCNGA 4 cut(s) 10, 67, 876, 1336
Hpy188III TCNNGA 5 cut(s) 209, 486, 947, 1220, 1253
Hpy8I GTNNAC 6 cut(s) 131, 193, 397, 415, 917, 935
HpyAV CCTTC 3 cut(s) 72, 220, 724
HpyCH4III ACNGT 3 cut(s) 451, 862, 1057
HpyCH4IV ACGT 4 cut(s) 568, 898, 919, 1089
HpyF10VI GCNNNNNNNGC 5 cut(s) 353, 378, 761, 818, 827
HpyF3I CTNAG 6 cut(s) 360, 765, 904, 1026, 1130, 1314
HpySE526I ACGT 4 cut(s) 568, 898, 919, 1089
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 8 cut(s) 199, 328, 413, 457, 518, 827, 1046, 1223
HspAI GCGC 2 cut(s) 83, 379
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 5 cut(s) 95, 211, 649, 1064, 1323
LmnI GCTCC 2 cut(s) 80, 848
LweI GCATC 4 cut(s) 574, 817, 1135, 1157
MaeI CTAG 3 cut(s) 843, 1110, 1284
MaeII ACGT 4 cut(s) 568, 898, 919, 1089
MaeIII GTNAC 6 cut(s) 777, 787, 1073, 1134, 1212, 1237
MalI GATC 5 cut(s) 97, 213, 651, 1066, 1325
MboI GATC 5 cut(s) 95, 211, 649, 1064, 1323
MboII GAAGA 8 cut(s) 420, 659, 739, 892, 935, 1109, 1301, 1330
MflI RGATCY 1 cut(s) 95
MhlI GDGCHC 4 cut(s) 399, 665, 853, 1027
MlsI TGGCCA 2 cut(s) 372, 1049
MluCI AATT 7 cut(s) 106, 481, 542, 561, 1182, 1203, 1292
MluNI TGGCCA 2 cut(s) 372, 1049
MlyI GAGTC 4 cut(s) 82, 592, 663, 1232
MnlI CCTC 6 cut(s) 22, 113, 331, 760, 997, 1252
Mox20I TGGCCA 2 cut(s) 372, 1049
Mph1103I ATGCAT 1 cut(s) 1150
MscI TGGCCA 2 cut(s) 372, 1049
MseI TTAA 6 cut(s) 558, 939, 987, 1086, 1229, 1339
MslI CAYNNNNRTG 1 cut(s) 402
Msp20I TGGCCA 2 cut(s) 372, 1049
MspA1I CMGCKG 2 cut(s) 359, 758
MspR9I CCNGG 2 cut(s) 960, 978
Mva1269I GAATGC 3 cut(s) 141, 334, 1123
MvaI CCWGG 2 cut(s) 960, 978
MvnI CGCG 1 cut(s) 381
MwoI GCNNNNNNNGC 5 cut(s) 353, 378, 761, 818, 827
NdeII GATC 5 cut(s) 95, 211, 649, 1064, 1323
NlaIII CATG 8 cut(s) 199, 328, 413, 457, 518, 827, 1046, 1223
NlaIV GGNNCC 4 cut(s) 49, 313, 850, 1311
NmuCI GTSAC 2 cut(s) 1073, 1237
NsiI ATGCAT 1 cut(s) 1150
NspI RCATGY 1 cut(s) 518
NspV TTCGAA 1 cut(s) 1208
PagI TCATGA 1 cut(s) 1219
PctI GAATGC 3 cut(s) 141, 334, 1123
PfeI GAWTC 4 cut(s) 11, 527, 645, 1249
PflFI GACNNNGTC 1 cut(s) 410
PflMI CCANNNNNTGG 2 cut(s) 253, 923
Ple19I CGATCG 1 cut(s) 652
PleI GAGTC 4 cut(s) 82, 592, 662, 1231
PpsI GAGTC 4 cut(s) 82, 592, 662, 1231
Psp6I CCWGG 2 cut(s) 958, 976
PspEI GGTNACC 1 cut(s) 1237
PspGI CCWGG 2 cut(s) 958, 976
PspN4I GGNNCC 4 cut(s) 49, 313, 850, 1311
PspPI GGNCC 5 cut(s) 47, 156, 820, 914, 1328
PstI CTGCAG 1 cut(s) 757
PsuI RGATCY 1 cut(s) 95
PsyI GACNNNGTC 1 cut(s) 410
PvuI CGATCG 1 cut(s) 652
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 3 cut(s) 571, 700, 868
RsaNI GTAC 3 cut(s) 570, 699, 867
RseI CAYNNNNRTG 1 cut(s) 402
SaqAI TTAA 6 cut(s) 558, 939, 987, 1086, 1229, 1339
Sau3AI GATC 5 cut(s) 95, 211, 649, 1064, 1323
Sau96I GGNCC 5 cut(s) 47, 156, 820, 914, 1328
SchI GAGTC 4 cut(s) 82, 592, 663, 1232
ScrFI CCNGG 2 cut(s) 960, 978
SduI GDGCHC 4 cut(s) 399, 665, 853, 1027
SfaNI GCATC 4 cut(s) 574, 817, 1135, 1157
SfcI CTRYAG 2 cut(s) 219, 753
SfuI TTCGAA 1 cut(s) 1208
SinI GGWCC 3 cut(s) 47, 914, 1328
SmiMI CAYNNNNRTG 1 cut(s) 402
SpeI ACTAGT 1 cut(s) 1283
Sse9I AATT 7 cut(s) 106, 481, 542, 561, 1182, 1203, 1292
SsiI CCGC 9 cut(s) 260, 381, 618, 696, 758, 818, 846, 912, 1062
SspMI CTAG 3 cut(s) 843, 1110, 1284
StyD4I CCNGG 2 cut(s) 958, 976
StyI CCWWGG 3 cut(s) 186, 813, 928
TaaI ACNGT 3 cut(s) 451, 862, 1057
TaiI ACGT 4 cut(s) 571, 901, 922, 1092
TaqI TCGA 4 cut(s) 111, 648, 652, 1208
TaqII GACCGA 1 cut(s) 1316
TasI AATT 7 cut(s) 106, 481, 542, 561, 1182, 1203, 1292
TauI GCSGC 2 cut(s) 621, 821
TfiI GAWTC 4 cut(s) 11, 527, 645, 1249
Tru1I TTAA 6 cut(s) 558, 939, 987, 1086, 1229, 1339
Tru9I TTAA 6 cut(s) 558, 939, 987, 1086, 1229, 1339
TscAI CASTG 1 cut(s) 1004
TseFI GTSAC 2 cut(s) 1073, 1237
Tsp45I GTSAC 2 cut(s) 1073, 1237
TspDTI ATGAA 5 cut(s) 341, 555, 893, 1208, 1280
TspRI CASTG 1 cut(s) 1004
Tth111I GACNNNGTC 1 cut(s) 410
Van91I CCANNNNNTGG 2 cut(s) 253, 923
VneI GTGCAC 1 cut(s) 395
VpaK11BI GGWCC 3 cut(s) 47, 914, 1328
XapI RAATTY 6 cut(s) 106, 481, 542, 1182, 1203, 1292
XceI RCATGY 1 cut(s) 518
XcmI CCANNNNNNNNNTGG 2 cut(s) 193, 291
XspI CTAG 3 cut(s) 843, 1110, 1284
Zsp2I ATGCAT 1 cut(s) 1150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.