FvH4_2g26140

Fumarate hydratase 1

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
21016183 .. 21020796
4614 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26140.t2

Sequence Viewer

Length: 1479 bp
ATGGCCATGTACGTCATTTCACGGCGAGTAACCGCCGGATCGACGCCGTTCCGCTACGCCGCTACTACTTGCTGGAGAAACTACTCGACGTCGTTTCGCGAGGAAAGGGACACCTTTGGACCCATTCTCGTCCCCTCAGACAAACTATGGGGAGCTCAGACTCAGCGATCGCTGCAGAACTTCGATATCGGCGGCGAGCGCGAACGCATGCCGGAGCCTATCATTCGCGCCTTCGGCGTCCTCAAGAAATGTGCTGCCAAGGTGAACATGGAGTATGGGCTTGACCAGTCTATAGGGAAAGCTATAATGCAGGCTGCACAAGAAGTGGCCGAGGGGAAGCTGAATCAGCATTTTCCACTTGTTGTGTGGCAAACTGGGAGCGGAACACAAAGCAACATGAATGCCAATGAGGTGATTGCAAACAGAGCGGCTGAAATACTTGGCCATAAGCGTGGCGATAAGTTTGTGCACCCGAATGACCATGTTAATAGATCACAGTCGTCAAATGACACTTTCCCAACTGTCATGCACATTGCCAGTGCAATGGAAATAAACTCAAGACTGATACCAAATTTGAAAGCTTTGCATTCTTCTCTACATTCAAAGTCAGATGAATTCAAAGATATTGTTAAAATCGGACGTACTCACACGCAAGATGCAACACCTTTGACTCTTGGGCAAGAGTTTAGCGGTTACTCTACACAAGTCAAGTATGGAATCGAGCGAGTCTTGTGCACTCTACCCCGCATGTATCAGCTTGCACAGGGTGGTACTGCTGTTGGGACTGGATTGAATACAAAGAAGGGATTTGATGTGAAGATAGCTGCAGCAGTAGCTGATGAAACAAACTTACCATTTGTCACTGCAGAAAACAAGTTTGAAGCTTTGGCTGCACATGACGCTTTTGTGGAAACTAGCGGAGCCTTGAATACAGTTGCTACTTCTCTGATGAAAATAGCAAATGACATACGTTTATTAGGAAGTGGTCCGCGATGTGGCCTTGGTGAACTCATCCTTCCTGAAAATGAGCCTGGAAGCAGCATTATGCCGGGGAAGGTTAACCCAACCCAGTGTGAGGCTATCACAATGGTTTGTGCTCAGGTTATGGGTAACAATGTGGCCATTACAGTAGGTGGATCTAATGGTCATTTTGAACTAAATGTATTCAAGCCAATGATTGCTAGTGCTCTCCTACATTCTGTTAGATTGCTTGGTGATGCATCTGCTTCCTTTGAAAAGAACTGTGTTAGAGGAATTGAAGCCAATAGGGAAAGAATCTCAAAGTTACTTCATGAGTCACTGATGTTGGTCACATCCTTGAATCCTAAAATTGGTTATGACAATGCTGCGGCAGTTGCGAAGAAAGCCCACAAGGAGGGCTCTACTTTGAAGGAAGCTGCATTGAAACTTGGGGTGCTAACGAGTGAAGAGTTTGATACTCTTGTGGTGCCCGAGAAGATGATTGGCCCGACCGACTGA

Protein Analysis

493

Amino Acids

53.33

Weight (kDa)

8.08

Isoelectric Point (pI)

29.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lyase_1 PF00206 42 - 370 9.3e-116 Lyase
FumaraseC_C PF10415 436 - 488 4.4e-24 Fumarase C C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 92
AccB1I GGYRCC 1 cut(s) 1447
AccBSI CCGCTC 2 cut(s) 381, 428
AccII CGCG 4 cut(s) 99, 201, 228, 991
AclWI GGATC 2 cut(s) 46, 1144
AcoI YGGCCR 4 cut(s) 3, 327, 442, 1119
AcsI RAATTY 2 cut(s) 571, 614
AcyI GRCGYC 3 cut(s) 44, 89, 237
AdeI CACNNNGTG 1 cut(s) 767
AfaI GTAC 3 cut(s) 11, 643, 772
AfiI CCNNNNNNNGG 4 cut(s) 995, 1075, 1331, 1375
AjnI CCWGG 1 cut(s) 1030
AluBI AGCT 9 cut(s) 155, 302, 340, 581, 757, 824, 836, 884, 1397
AluI AGCT 9 cut(s) 155, 302, 340, 581, 757, 824, 836, 884, 1397
Alw21I GWGCWC 5 cut(s) 157, 471, 737, 1099, 1189
Alw44I GTGCAC 2 cut(s) 467, 733
AlwI GGATC 2 cut(s) 46, 1144
AlwNI CAGNNNCTG 1 cut(s) 836
Ama87I CYCGRG 1 cut(s) 1451
AoxI GGCC 6 cut(s) 3, 327, 442, 997, 1119, 1465
ApaLI GTGCAC 2 cut(s) 467, 733
ApeKI GCWGC 9 cut(s) 172, 254, 314, 824, 827, 890, 1038, 1346, 1397
ApoI RAATTY 2 cut(s) 571, 614
AsiSI GCGATCGC 1 cut(s) 170
AspLEI GCGC 2 cut(s) 201, 230
AspS9I GGNCC 3 cut(s) 119, 986, 1466
AsuC2I CCSGG 1 cut(s) 1050
AsuHPI GGTGA 4 cut(s) 274, 424, 1016, 1226
AvaI CYCGRG 1 cut(s) 1451
AvaII GGWCC 2 cut(s) 119, 986
BaeGI GKGCMC 3 cut(s) 471, 737, 1452
BaeI ACNNNNGTAYC 4 cut(s) 762, 795, 1428, 1461
BalI TGGCCA 3 cut(s) 5, 444, 1121
BanI GGYRCC 1 cut(s) 1447
BanII GRGCYC 2 cut(s) 157, 1382
Bbv12I GWGCWC 5 cut(s) 157, 471, 737, 1099, 1189
BbvI GCAGC 9 cut(s) 159, 241, 301, 811, 839, 877, 1050, 1333, 1384
BceAI ACGGC 2 cut(s) 31, 38
BcgI CGANNNNNNTGC 2 cut(s) 714, 748
BciT130I CCWGG 1 cut(s) 1032
BcnI CCSGG 1 cut(s) 1050
BfaI CTAG 2 cut(s) 915, 1182
BfmI CTRYAG 4 cut(s) 173, 291, 825, 864
Bme1390I CCNGG 2 cut(s) 1032, 1050
Bme18I GGWCC 2 cut(s) 119, 986
BmeT110I CYCGRG 1 cut(s) 1451
BmgT120I GGNCC 3 cut(s) 119, 986, 1466
BmiI GGNNCC 4 cut(s) 121, 216, 922, 1449
BmrFI CCNGG 2 cut(s) 1032, 1050
BmrI ACTGGG 2 cut(s) 384, 1063
BmsI GCATC 3 cut(s) 646, 1207, 1229
BmuI ACTGGG 2 cut(s) 384, 1063
BpmI CTGGAG 1 cut(s) 94
Bpu10I CCTNAGC 1 cut(s) 1098
BpuEI CTTGAG 2 cut(s) 227, 541
BpuMI CCSGG 1 cut(s) 1050
BsaHI GRCGYC 3 cut(s) 44, 89, 237
BsaJI CCNNGG 4 cut(s) 258, 330, 1000, 1049
Bsc4I CCNNNNNNNGG 4 cut(s) 995, 1075, 1331, 1375
Bse1I ACTGG 5 cut(s) 286, 379, 537, 790, 1069
Bse3DI GCAATG 2 cut(s) 531, 549
BseBI CCWGG 1 cut(s) 1032
BseDI CCNNGG 4 cut(s) 258, 330, 1000, 1049
BseGI GGATG 2 cut(s) 1011, 1313
BseLI CCNNNNNNNGG 4 cut(s) 995, 1075, 1331, 1375
BseMI GCAATG 2 cut(s) 531, 549
BseMII CTCAG 4 cut(s) 150, 170, 176, 1112
BseNI ACTGG 5 cut(s) 286, 379, 537, 790, 1069
BseSI GKGCMC 3 cut(s) 471, 737, 1452
BseXI GCAGC 9 cut(s) 159, 241, 301, 811, 839, 877, 1050, 1333, 1384
BsgI GTGCAG 2 cut(s) 300, 876
Bsh1236I CGCG 4 cut(s) 99, 201, 228, 991
Bsh1285I CGRYCG 2 cut(s) 170, 1473
BshFI GGCC 6 cut(s) 5, 329, 444, 999, 1121, 1467
BshNI GGYRCC 1 cut(s) 1447
BsiEI CGRYCG 2 cut(s) 170, 1473
BsiHKAI GWGCWC 5 cut(s) 157, 471, 737, 1099, 1189
BsiHKCI CYCGRG 1 cut(s) 1451
BsiSI CCGG 3 cut(s) 36, 212, 1049
BslFI GGGAC 3 cut(s) 116, 122, 796
BslI CCNNNNNNNGG 4 cut(s) 995, 1075, 1331, 1375
BsmFI GGGAC 3 cut(s) 116, 122, 796
BsmI GAATGC 2 cut(s) 406, 586
BsnI GGCC 6 cut(s) 5, 329, 444, 999, 1121, 1467
BsoBI CYCGRG 1 cut(s) 1451
Bsp1286I GDGCHC 7 cut(s) 157, 471, 737, 1099, 1189, 1382, 1452
Bsp143I GATC 4 cut(s) 38, 167, 491, 1136
Bsp68I TCGCGA 1 cut(s) 99
BspANI GGCC 6 cut(s) 5, 329, 444, 999, 1121, 1467
BspCNI CTCAG 4 cut(s) 149, 169, 175, 1111
BspFNI CGCG 4 cut(s) 99, 201, 228, 991
BspHI TCATGA 1 cut(s) 1291
BspLI GGNNCC 4 cut(s) 121, 216, 922, 1449
BspMAI CTGCAG 3 cut(s) 177, 829, 868
BspPI GGATC 2 cut(s) 46, 1144
BspT107I GGYRCC 1 cut(s) 1447
BsrBI CCGCTC 2 cut(s) 381, 428
BsrDI GCAATG 2 cut(s) 531, 549
BsrI ACTGG 5 cut(s) 286, 379, 537, 790, 1069
BssECI CCNNGG 4 cut(s) 258, 330, 1000, 1049
BssMI GATC 4 cut(s) 38, 167, 491, 1136
BssNI GRCGYC 3 cut(s) 44, 89, 237
BssT1I CCWWGG 2 cut(s) 258, 1000
Bst2UI CCWGG 1 cut(s) 1032
Bst4CI ACNGT 5 cut(s) 498, 523, 934, 1129, 1244
Bst6I CTCTTC 1 cut(s) 1422
BstACI GRCGYC 3 cut(s) 44, 89, 237
BstC8I GCNNGC 4 cut(s) 197, 209, 312, 759
BstDEI CTNAG 4 cut(s) 136, 156, 162, 1098
BstF5I GGATG 2 cut(s) 1011, 1313
BstFNI CGCG 4 cut(s) 99, 201, 228, 991
BstHHI GCGC 2 cut(s) 201, 230
BstKTI GATC 4 cut(s) 41, 170, 494, 1139
BstMBI GATC 4 cut(s) 38, 167, 491, 1136
BstMCI CGRYCG 2 cut(s) 170, 1473
BstNI CCWGG 1 cut(s) 1032
BstNSI RCATGY 2 cut(s) 211, 751
BstSCI CCNGG 2 cut(s) 1030, 1048
BstSFI CTRYAG 4 cut(s) 173, 291, 825, 864
BstSLI GKGCMC 3 cut(s) 471, 737, 1452
BstUI CGCG 4 cut(s) 99, 201, 228, 991
BstV1I GCAGC 9 cut(s) 159, 241, 301, 811, 839, 877, 1050, 1333, 1384
BstX2I RGATCY 1 cut(s) 1136
BstXI CCANNNNNNTGG 2 cut(s) 452, 544
BstYI RGATCY 1 cut(s) 1136
BsuRI GGCC 6 cut(s) 5, 329, 444, 999, 1121, 1467
BtgZI GCGATG 1 cut(s) 1006
BtsCI GGATG 2 cut(s) 1011, 1313
BtsI GCAGTG 1 cut(s) 861
BtsIMutI CAGTG 4 cut(s) 544, 861, 1076, 1298
BtuMI TCGCGA 1 cut(s) 99
Cac8I GCNNGC 4 cut(s) 197, 209, 312, 759
CaiI CAGNNNCTG 1 cut(s) 836
CciI TCATGA 1 cut(s) 1291
CfoI GCGC 2 cut(s) 201, 230
Cfr13I GGNCC 3 cut(s) 119, 986, 1466
CseI GACGC 3 cut(s) 52, 226, 908
Csp6I GTAC 3 cut(s) 10, 642, 771
CviAII CATG 9 cut(s) 7, 208, 268, 397, 482, 526, 748, 896, 1292
CviQI GTAC 3 cut(s) 10, 642, 771
DdeI CTNAG 4 cut(s) 136, 156, 162, 1098
DpnI GATC 4 cut(s) 40, 169, 493, 1138
DpnII GATC 4 cut(s) 38, 167, 491, 1136
DraIII CACNNNGTG 1 cut(s) 767
EaeI YGGCCR 4 cut(s) 3, 327, 442, 1119
Eam1104I CTCTTC 1 cut(s) 1422
EarI CTCTTC 1 cut(s) 1422
Ecl136II GAGCTC 1 cut(s) 155
Eco130I CCWWGG 2 cut(s) 258, 1000
Eco24I GRGCYC 2 cut(s) 157, 1382
Eco32I GATATC 1 cut(s) 187
Eco47I GGWCC 2 cut(s) 119, 986
Eco53kI GAGCTC 1 cut(s) 155
Eco88I CYCGRG 1 cut(s) 1451
EcoICRI GAGCTC 1 cut(s) 155
EcoRI GAATTC 1 cut(s) 614
EcoRII CCWGG 1 cut(s) 1030
EcoRV GATATC 1 cut(s) 187
EcoT14I CCWWGG 2 cut(s) 258, 1000
EcoT22I ATGCAT 1 cut(s) 1222
EcoT38I GRGCYC 2 cut(s) 157, 1382
ErhI CCWWGG 2 cut(s) 258, 1000
FaeI CATG 9 cut(s) 10, 211, 271, 400, 485, 529, 751, 899, 1295
FaqI GGGAC 3 cut(s) 116, 122, 796
FatI CATG 9 cut(s) 6, 207, 267, 396, 481, 525, 747, 895, 1291
FauI CCCGC 1 cut(s) 752
FokI GGATG 2 cut(s) 998, 1300
FriOI GRGCYC 2 cut(s) 157, 1382
FspBI CTAG 2 cut(s) 915, 1182
GlaI GCGC 2 cut(s) 200, 229
GsuI CTGGAG 1 cut(s) 94
HaeIII GGCC 6 cut(s) 5, 329, 444, 999, 1121, 1467
HapII CCGG 3 cut(s) 36, 212, 1049
HgaI GACGC 3 cut(s) 52, 226, 908
HhaI GCGC 2 cut(s) 201, 230
Hin1I GRCGYC 3 cut(s) 44, 89, 237
Hin1II CATG 9 cut(s) 10, 211, 271, 400, 485, 529, 751, 899, 1295
Hin6I GCGC 2 cut(s) 199, 228
HinP1I GCGC 2 cut(s) 199, 228
HincII GTYRAC 1 cut(s) 1060
HindII GTYRAC 1 cut(s) 1060
HindIII AAGCTT 2 cut(s) 579, 882
HinfI GANTC 8 cut(s) 160, 343, 670, 717, 726, 1275, 1295, 1321
HpaI GTTAAC 1 cut(s) 1060
HpaII CCGG 3 cut(s) 36, 212, 1049
HphI GGTGA 4 cut(s) 274, 424, 1016, 1226
Hpy166II GTNNAC 5 cut(s) 265, 469, 735, 1007, 1060
Hpy188I TCNGA 5 cut(s) 139, 159, 610, 638, 948
Hpy188III TCNNGA 5 cut(s) 98, 244, 558, 1019, 1292
Hpy8I GTNNAC 5 cut(s) 265, 469, 735, 1007, 1060
Hpy99I CGWCG 3 cut(s) 46, 91, 94
HpyAV CCTTC 5 cut(s) 241, 796, 1025, 1048, 1384
HpyCH4III ACNGT 5 cut(s) 498, 523, 934, 1129, 1244
HpyCH4IV ACGT 4 cut(s) 12, 89, 640, 970
HpyF3I CTNAG 4 cut(s) 136, 156, 162, 1098
HpySE526I ACGT 4 cut(s) 12, 89, 640, 970
Hsp92I GRCGYC 3 cut(s) 44, 89, 237
Hsp92II CATG 9 cut(s) 10, 211, 271, 400, 485, 529, 751, 899, 1295
HspAI GCGC 2 cut(s) 199, 228
KspAI GTTAAC 1 cut(s) 1060
Kzo9I GATC 4 cut(s) 38, 167, 491, 1136
LmnI GCTCC 4 cut(s) 152, 214, 378, 920
Lsp1109I GCAGC 9 cut(s) 159, 241, 301, 811, 839, 877, 1050, 1333, 1384
LweI GCATC 3 cut(s) 646, 1207, 1229
MaeI CTAG 2 cut(s) 915, 1182
MaeII ACGT 4 cut(s) 12, 89, 640, 970
MaeIII GTNAC 7 cut(s) 28, 692, 859, 1109, 1284, 1296, 1309
MalI GATC 4 cut(s) 40, 169, 493, 1138
MbiI CCGCTC 2 cut(s) 381, 428
MboI GATC 4 cut(s) 38, 167, 491, 1136
MboII GAAGA 5 cut(s) 582, 829, 1372, 1439, 1468
MflI RGATCY 1 cut(s) 1136
MhlI GDGCHC 7 cut(s) 157, 471, 737, 1099, 1189, 1382, 1452
MlsI TGGCCA 3 cut(s) 5, 444, 1121
MluCI AATT 4 cut(s) 571, 614, 1254, 1329
MluNI TGGCCA 3 cut(s) 5, 444, 1121
MlyI GAGTC 4 cut(s) 154, 664, 735, 1304
MnlI CCTC 8 cut(s) 94, 145, 251, 325, 403, 1069, 1244, 1369
Mox20I TGGCCA 3 cut(s) 5, 444, 1121
Mph1103I ATGCAT 1 cut(s) 1222
MscI TGGCCA 3 cut(s) 5, 444, 1121
MseI TTAA 3 cut(s) 486, 630, 1059
MslI CAYNNNNRTG 2 cut(s) 450, 474
Msp20I TGGCCA 3 cut(s) 5, 444, 1121
MspI CCGG 3 cut(s) 36, 212, 1049
MspR9I CCNGG 2 cut(s) 1032, 1050
Mva1269I GAATGC 2 cut(s) 406, 586
MvaI CCWGG 1 cut(s) 1032
MvnI CGCG 4 cut(s) 99, 201, 228, 991
NciI CCSGG 1 cut(s) 1050
NdeII GATC 4 cut(s) 38, 167, 491, 1136
NlaIII CATG 9 cut(s) 10, 211, 271, 400, 485, 529, 751, 899, 1295
NlaIV GGNNCC 4 cut(s) 121, 216, 922, 1449
NmeAIII GCCGAG 1 cut(s) 355
NmuCI GTSAC 3 cut(s) 859, 1296, 1309
NruI TCGCGA 1 cut(s) 99
NsiI ATGCAT 1 cut(s) 1222
NspI RCATGY 2 cut(s) 211, 751
PaeI GCATGC 1 cut(s) 211
PagI TCATGA 1 cut(s) 1291
PctI GAATGC 2 cut(s) 406, 586
PfeI GAWTC 4 cut(s) 343, 717, 1275, 1321
Ple19I CGATCG 1 cut(s) 170
PleI GAGTC 4 cut(s) 154, 664, 734, 1303
PpsI GAGTC 4 cut(s) 154, 664, 734, 1303
Psp124BI GAGCTC 1 cut(s) 157
Psp6I CCWGG 1 cut(s) 1030
PspGI CCWGG 1 cut(s) 1030
PspN4I GGNNCC 4 cut(s) 121, 216, 922, 1449
PspPI GGNCC 3 cut(s) 119, 986, 1466
PstI CTGCAG 3 cut(s) 177, 829, 868
PstNI CAGNNNCTG 1 cut(s) 836
PsuI RGATCY 1 cut(s) 1136
PvuI CGATCG 1 cut(s) 170
RgaI GCGATCGC 1 cut(s) 170
RruI TCGCGA 1 cut(s) 99
RsaI GTAC 3 cut(s) 11, 643, 772
RsaNI GTAC 3 cut(s) 10, 642, 771
RseI CAYNNNNRTG 2 cut(s) 450, 474
SacI GAGCTC 1 cut(s) 157
SaqAI TTAA 3 cut(s) 486, 630, 1059
Sau3AI GATC 4 cut(s) 38, 167, 491, 1136
Sau96I GGNCC 3 cut(s) 119, 986, 1466
SchI GAGTC 4 cut(s) 154, 664, 735, 1304
ScrFI CCNGG 2 cut(s) 1032, 1050
SduI GDGCHC 7 cut(s) 157, 471, 737, 1099, 1189, 1382, 1452
SfaAI GCGATCGC 1 cut(s) 170
SfaNI GCATC 3 cut(s) 646, 1207, 1229
SfcI CTRYAG 4 cut(s) 173, 291, 825, 864
SgfI GCGATCGC 1 cut(s) 170
SinI GGWCC 2 cut(s) 119, 986
SmiMI CAYNNNNRTG 2 cut(s) 450, 474
SmlI CTYRAG 2 cut(s) 242, 556
SmoI CTYRAG 2 cut(s) 242, 556
SphI GCATGC 1 cut(s) 211
Sse9I AATT 4 cut(s) 571, 614, 1254, 1329
SspMI CTAG 2 cut(s) 915, 1182
SstI GAGCTC 1 cut(s) 157
StyD4I CCNGG 2 cut(s) 1030, 1048
StyI CCWWGG 2 cut(s) 258, 1000
TaaI ACNGT 5 cut(s) 498, 523, 934, 1129, 1244
TaiI ACGT 4 cut(s) 15, 92, 643, 973
TaqI TCGA 4 cut(s) 41, 86, 183, 720
TasI AATT 4 cut(s) 571, 614, 1254, 1329
TauI GCSGC 4 cut(s) 62, 195, 431, 1352
TfiI GAWTC 4 cut(s) 343, 717, 1275, 1321
Tru1I TTAA 3 cut(s) 486, 630, 1059
Tru9I TTAA 3 cut(s) 486, 630, 1059
TscAI CASTG 4 cut(s) 544, 868, 1076, 1305
TseFI GTSAC 3 cut(s) 859, 1296, 1309
TseI GCWGC 9 cut(s) 172, 254, 314, 824, 827, 890, 1038, 1346, 1397
Tsp45I GTSAC 3 cut(s) 859, 1296, 1309
TspDTI ATGAA 5 cut(s) 413, 627, 855, 965, 1280
TspRI CASTG 4 cut(s) 544, 868, 1076, 1305
VneI GTGCAC 2 cut(s) 467, 733
VpaK11BI GGWCC 2 cut(s) 119, 986
XapI RAATTY 2 cut(s) 571, 614
XceI RCATGY 2 cut(s) 211, 751
XcmI CCANNNNNNNNNTGG 2 cut(s) 265, 363
XspI CTAG 2 cut(s) 915, 1182
ZraI GACGTC 1 cut(s) 90
Zsp2I ATGCAT 1 cut(s) 1222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.