pycom03g23150

Fumarate hydratase 1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
23078701 .. 23082075
3375 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g23150.4

Sequence Viewer

Length: 1272 bp
ATGCCCGAACCCATCGTTCGTGCTTTTGGGGTGCTCAAAAAATGCGCTGCAAAGGTGAACATGGAATATGGGCTTGATCCAACTATTGGGAAAGCAATAATGCAAGCTGCCCAAGAAGTCGCCGAGGGAAAGCTCAACCAACACTTTCCGCTTGTTATCTGGCAGACTGGCAGTGGAACCCAAAGCAACATGAATGCCAATGAGGTCATTTCGAACAGGGCAGCTGAGATACTTGGCCATCAGCGCGGCGAGAAGTTTGTGCACCCAAATGACCATGTTAATAGATCACAATCTTCCAATGACACTTTCCCAACGGTCATGCACATTGCATCTGCAAAGGAGATTAACTCAAGACTGATACCAAATTTGCAAACTTTACATGCTGCCCTACATTCAAAGTCTGAAGAATTCAAAGATATTGTTAAAATTGGACGAACCCACACGCAAGATGCGACACCTTTGACCCTTGGGCAAGAGTTCAGCGGCTATTCAACACAAGTGAAGTATGGAATTGAACGAGTTTTGCGTACTCTACCTCGCATGTATCAGCTTGCACAGGGTGGTACTGCTGTTGGGACTGGATTGAACACAAAGAAGGGATTTGATGTAAAGATAGCTGCAGCAGTAGCTGAGGAAACAAAGTTACCATTTGTAACTGCAGAAAACAAGTTTGAAGCTTTGGCTGCACATGATGCTGTTGTTGAAACTAGCGGAGCCCTAAACACAGTTGCTACCTCTTTGATGAAGATTGCTAATGACATACGTTTTTTAGGAAGTGGTCCACGTTGTGGCCTTGGTGAACTCATTCTCCCTGAAAACGAGCCTGGTAGCAGCATTATGCCTGGGAAGGTAAACCCTACCCAGTGTGAGGCTCTCACAATGGTCTGTGCTCGGGTTATGGGTAACAATGTTGCCATTACAGTAGGTGGATCAAATGGTCACTTTGAACTTAATGTGTTCAAGCCAATGATTGCTAGTGGTCTCCTACACTCTGTGAGATTGCTTGGGGATGCATCTGCTTCCTTTGAAAAGAACTGCGTGAGAGGAATTCAAGCTAATAGGGAAAGAATTTCAAAGTTTCTTCATGAGTCACTTATGTTGGTCACATCCTTGAATCATAAAATTGGTTATGATAATGCTGCGGCAGTTGCAAAGACAGCCCACAAGGAGGGATCCACTTTGAAGGAAGCTGCATTGAAACTTGGAATGCTATCGAGCGAAGAATTTGATACTCTTGTGGTGCCAGAGAAGATGATTGGCCCAACTGACTGA

Protein Analysis

424

Amino Acids

45.53

Weight (kDa)

7.73

Isoelectric Point (pI)

25.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1240
AccB7I CCANNNNNTGG 2 cut(s) 86, 788
AccII CGCG 1 cut(s) 246
AciI CCGC 5 cut(s) 149, 246, 483, 711, 1142
AclWI GGATC 4 cut(s) 71, 937, 1167, 1180
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 5 cut(s) 364, 407, 1047, 1068, 1223
AcuI CTGAAG 1 cut(s) 423
AdeI CACNNNGTG 3 cut(s) 560, 788, 994
AfaI GTAC 2 cut(s) 529, 565
AfiI CCNNNNNNNGG 4 cut(s) 86, 788, 868, 1168
AjnI CCWGG 2 cut(s) 823, 841
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
AloI GAACNNNNNNTCC 2 cut(s) 792, 824
AluBI AGCT 9 cut(s) 107, 133, 224, 550, 617, 629, 677, 1055, 1190
AluI AGCT 9 cut(s) 107, 133, 224, 550, 617, 629, 677, 1055, 1190
Alw21I GWGCWC 3 cut(s) 36, 264, 892
Alw26I GTCTC 1 cut(s) 986
Alw44I GTGCAC 1 cut(s) 260
AlwI GGATC 4 cut(s) 71, 937, 1167, 1180
AlwNI CAGNNNCTG 1 cut(s) 629
Ama87I CYCGRG 1 cut(s) 891
AoxI GGCC 3 cut(s) 235, 790, 1258
ApaLI GTGCAC 1 cut(s) 260
ApoI RAATTY 5 cut(s) 364, 407, 1047, 1068, 1223
Asp700I GAANNNNTTC 1 cut(s) 804
AspLEI GCGC 2 cut(s) 47, 246
AspS9I GGNCC 2 cut(s) 779, 1259
AsuHPI GGTGA 2 cut(s) 67, 809
AsuII TTCGAA 1 cut(s) 212
AvaI CYCGRG 1 cut(s) 891
AvaII GGWCC 1 cut(s) 779
BaeGI GKGCMC 1 cut(s) 264
BaeI ACNNNNGTAYC 4 cut(s) 555, 588, 1221, 1254
BalI TGGCCA 1 cut(s) 237
BamHI GGATCC 1 cut(s) 1172
BanI GGYRCC 1 cut(s) 1240
BanII GRGCYC 1 cut(s) 718
Bbv12I GWGCWC 3 cut(s) 36, 264, 892
BbvCI CCTCAGC 1 cut(s) 630
BccI CCATC 2 cut(s) 20, 246
BciT130I CCWGG 2 cut(s) 825, 843
BcoDI GTCTC 1 cut(s) 986
BfaI CTAG 2 cut(s) 708, 975
BfmI CTRYAG 2 cut(s) 618, 657
Bme1390I CCNGG 2 cut(s) 825, 843
Bme18I GGWCC 1 cut(s) 779
BmeT110I CYCGRG 1 cut(s) 891
BmgT120I GGNCC 2 cut(s) 779, 1259
BmiI GGNNCC 4 cut(s) 178, 715, 1174, 1242
BmrFI CCNGG 2 cut(s) 825, 843
BmrI ACTGGG 1 cut(s) 856
BmsI GCATC 5 cut(s) 338, 439, 682, 1000, 1022
BmuI ACTGGG 1 cut(s) 856
BplI GAGNNNNNCTC 2 cut(s) 332, 364
Bpu10I CCTNAGC 1 cut(s) 630
Bpu14I TTCGAA 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 334
BsaBI GATNNNNATC 1 cut(s) 289
BsaI GGTCTC 1 cut(s) 986
BsaJI CCNNGG 4 cut(s) 123, 466, 793, 842
BsaXI ACNNNNNCTCC 2 cut(s) 792, 822
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 788, 868, 1168
Bse1I ACTGG 3 cut(s) 172, 583, 862
Bse3DI GCAATG 1 cut(s) 324
Bse8I GATNNNNATC 1 cut(s) 289
BseBI CCWGG 2 cut(s) 825, 843
BseDI CCNNGG 4 cut(s) 123, 466, 793, 842
BseGI GGATG 2 cut(s) 1015, 1106
BseJI GATNNNNATC 1 cut(s) 289
BseLI CCNNNNNNNGG 4 cut(s) 86, 788, 868, 1168
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 2 cut(s) 216, 621
BseNI ACTGG 3 cut(s) 172, 583, 862
BseSI GKGCMC 1 cut(s) 264
BsgI GTGCAG 1 cut(s) 669
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 3 cut(s) 237, 792, 1260
BshNI GGYRCC 1 cut(s) 1240
BsiHKAI GWGCWC 3 cut(s) 36, 264, 892
BsiHKCI CYCGRG 1 cut(s) 891
BslFI GGGAC 1 cut(s) 589
BslI CCNNNNNNNGG 4 cut(s) 86, 788, 868, 1168
BsmAI GTCTC 1 cut(s) 986
BsmFI GGGAC 1 cut(s) 589
BsmI GAATGC 2 cut(s) 199, 1212
BsnI GGCC 3 cut(s) 237, 792, 1260
Bso31I GGTCTC 1 cut(s) 986
BsoBI CYCGRG 1 cut(s) 891
Bsp119I TTCGAA 1 cut(s) 212
Bsp1286I GDGCHC 4 cut(s) 36, 264, 718, 892
Bsp143I GATC 4 cut(s) 76, 284, 929, 1172
BspACI CCGC 5 cut(s) 149, 246, 483, 711, 1142
BspANI GGCC 3 cut(s) 237, 792, 1260
BspCNI CTCAG 2 cut(s) 217, 622
BspFNI CGCG 1 cut(s) 246
BspHI TCATGA 1 cut(s) 1084
BspLI GGNNCC 4 cut(s) 178, 715, 1174, 1242
BspMAI CTGCAG 2 cut(s) 622, 661
BspPI GGATC 4 cut(s) 71, 937, 1167, 1180
BspT104I TTCGAA 1 cut(s) 212
BspT107I GGYRCC 1 cut(s) 1240
BspTNI GGTCTC 1 cut(s) 986
BsrDI GCAATG 1 cut(s) 324
BsrI ACTGG 3 cut(s) 172, 583, 862
BssECI CCNNGG 4 cut(s) 123, 466, 793, 842
BssMI GATC 4 cut(s) 76, 284, 929, 1172
BssT1I CCWWGG 2 cut(s) 466, 793
Bst2UI CCWGG 2 cut(s) 825, 843
Bst4CI ACNGT 3 cut(s) 316, 727, 922
BstAPI GCANNNNNTGC 1 cut(s) 692
BstBI TTCGAA 1 cut(s) 212
BstC8I GCNNGC 2 cut(s) 105, 552
BstDEI CTNAG 2 cut(s) 225, 630
BstF5I GGATG 2 cut(s) 1015, 1106
BstFNI CGCG 1 cut(s) 246
BstHHI GCGC 2 cut(s) 47, 246
BstKTI GATC 4 cut(s) 79, 287, 932, 1175
BstMAI GTCTC 1 cut(s) 986
BstMBI GATC 4 cut(s) 76, 284, 929, 1172
BstMWI GCNNNNNNNGC 6 cut(s) 243, 626, 683, 692, 1148, 1157
BstNI CCWGG 2 cut(s) 825, 843
BstNSI RCATGY 2 cut(s) 383, 544
BstSCI CCNGG 2 cut(s) 823, 841
BstSFI CTRYAG 2 cut(s) 618, 657
BstSLI GKGCMC 1 cut(s) 264
BstUI CGCG 1 cut(s) 246
BstX2I RGATCY 1 cut(s) 1172
BstYI RGATCY 1 cut(s) 1172
BsuRI GGCC 3 cut(s) 237, 792, 1260
BtsCI GGATG 2 cut(s) 1015, 1106
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 2 cut(s) 178, 869
Cac8I GCNNGC 2 cut(s) 105, 552
CaiI CAGNNNCTG 1 cut(s) 629
CciI TCATGA 1 cut(s) 1084
CfoI GCGC 2 cut(s) 47, 246
Cfr13I GGNCC 2 cut(s) 779, 1259
Csp6I GTAC 2 cut(s) 528, 564
CviAII CATG 8 cut(s) 61, 190, 275, 319, 380, 541, 689, 1085
CviQI GTAC 2 cut(s) 528, 564
DdeI CTNAG 2 cut(s) 225, 630
DpnI GATC 4 cut(s) 78, 286, 931, 1174
DpnII GATC 4 cut(s) 76, 284, 929, 1172
DraIII CACNNNGTG 3 cut(s) 560, 788, 994
EaeI YGGCCR 1 cut(s) 235
Eco130I CCWWGG 2 cut(s) 466, 793
Eco24I GRGCYC 1 cut(s) 718
Eco31I GGTCTC 1 cut(s) 986
Eco47I GGWCC 1 cut(s) 779
Eco57I CTGAAG 1 cut(s) 423
Eco88I CYCGRG 1 cut(s) 891
EcoRI GAATTC 2 cut(s) 407, 1047
EcoRII CCWGG 2 cut(s) 823, 841
EcoT14I CCWWGG 2 cut(s) 466, 793
EcoT22I ATGCAT 1 cut(s) 1015
EcoT38I GRGCYC 1 cut(s) 718
ErhI CCWWGG 2 cut(s) 466, 793
FaeI CATG 8 cut(s) 64, 193, 278, 322, 383, 544, 692, 1088
FaqI GGGAC 1 cut(s) 589
FatI CATG 8 cut(s) 60, 189, 274, 318, 379, 540, 688, 1084
FokI GGATG 2 cut(s) 1022, 1093
FriOI GRGCYC 1 cut(s) 718
FspBI CTAG 2 cut(s) 708, 975
GlaI GCGC 2 cut(s) 46, 245
HaeIII GGCC 3 cut(s) 237, 792, 1260
HhaI GCGC 2 cut(s) 47, 246
Hin1II CATG 8 cut(s) 64, 193, 278, 322, 383, 544, 692, 1088
Hin6I GCGC 2 cut(s) 45, 244
HinP1I GCGC 2 cut(s) 45, 244
HindIII AAGCTT 1 cut(s) 675
HinfI GANTC 2 cut(s) 1088, 1114
HphI GGTGA 2 cut(s) 67, 809
Hpy166II GTNNAC 5 cut(s) 58, 262, 782, 800, 853
Hpy188I TCNGA 1 cut(s) 403
Hpy188III TCNNGA 2 cut(s) 351, 1085
Hpy8I GTNNAC 5 cut(s) 58, 262, 782, 800, 853
HpyAV CCTTC 3 cut(s) 589, 841, 1177
HpyCH4III ACNGT 3 cut(s) 316, 727, 922
HpyCH4IV ACGT 2 cut(s) 763, 784
HpyF10VI GCNNNNNNNGC 6 cut(s) 243, 626, 683, 692, 1148, 1157
HpyF3I CTNAG 2 cut(s) 225, 630
HpySE526I ACGT 2 cut(s) 763, 784
Hsp92II CATG 8 cut(s) 64, 193, 278, 322, 383, 544, 692, 1088
HspAI GCGC 2 cut(s) 45, 244
Kzo9I GATC 4 cut(s) 76, 284, 929, 1172
LmnI GCTCC 1 cut(s) 713
LweI GCATC 5 cut(s) 338, 439, 682, 1000, 1022
MaeI CTAG 2 cut(s) 708, 975
MaeII ACGT 2 cut(s) 763, 784
MaeIII GTNAC 6 cut(s) 642, 652, 902, 938, 1089, 1102
MalI GATC 4 cut(s) 78, 286, 931, 1174
MboI GATC 4 cut(s) 76, 284, 929, 1172
MboII GAAGA 6 cut(s) 285, 416, 757, 1073, 1232, 1261
MflI RGATCY 1 cut(s) 1172
MhlI GDGCHC 4 cut(s) 36, 264, 718, 892
MlsI TGGCCA 1 cut(s) 237
MluCI AATT 8 cut(s) 364, 407, 426, 510, 1047, 1068, 1122, 1223
MluNI TGGCCA 1 cut(s) 237
MlyI GAGTC 1 cut(s) 1097
MmeI TCCRAC 1 cut(s) 104
MnlI CCTC 8 cut(s) 118, 196, 546, 625, 745, 862, 1037, 1162
Mox20I TGGCCA 1 cut(s) 237
Mph1103I ATGCAT 1 cut(s) 1015
MroXI GAANNNNTTC 1 cut(s) 804
MscI TGGCCA 1 cut(s) 237
MseI TTAA 4 cut(s) 279, 345, 423, 951
MslI CAYNNNNRTG 1 cut(s) 267
Msp20I TGGCCA 1 cut(s) 237
MspA1I CMGCKG 2 cut(s) 224, 483
MspR9I CCNGG 2 cut(s) 825, 843
Mva1269I GAATGC 2 cut(s) 199, 1212
MvaI CCWGG 2 cut(s) 825, 843
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 6 cut(s) 243, 626, 683, 692, 1148, 1157
NdeII GATC 4 cut(s) 76, 284, 929, 1172
NlaIII CATG 8 cut(s) 64, 193, 278, 322, 383, 544, 692, 1088
NlaIV GGNNCC 4 cut(s) 178, 715, 1174, 1242
NmeAIII GCCGAG 1 cut(s) 148
NmuCI GTSAC 3 cut(s) 938, 1089, 1102
NsiI ATGCAT 1 cut(s) 1015
NspI RCATGY 2 cut(s) 383, 544
NspV TTCGAA 1 cut(s) 212
PagI TCATGA 1 cut(s) 1084
PcsI WCGNNNNNNNCGW 2 cut(s) 449, 523
PctI GAATGC 2 cut(s) 199, 1212
PdmI GAANNNNTTC 1 cut(s) 804
PfeI GAWTC 1 cut(s) 1114
PflMI CCANNNNNTGG 2 cut(s) 86, 788
PleI GAGTC 1 cut(s) 1096
PpsI GAGTC 1 cut(s) 1096
Psp6I CCWGG 2 cut(s) 823, 841
PspGI CCWGG 2 cut(s) 823, 841
PspN4I GGNNCC 4 cut(s) 178, 715, 1174, 1242
PspPI GGNCC 2 cut(s) 779, 1259
PstI CTGCAG 2 cut(s) 622, 661
PstNI CAGNNNCTG 1 cut(s) 629
PsuI RGATCY 1 cut(s) 1172
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 2 cut(s) 529, 565
RsaNI GTAC 2 cut(s) 528, 564
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 4 cut(s) 279, 345, 423, 951
Sau3AI GATC 4 cut(s) 76, 284, 929, 1172
Sau96I GGNCC 2 cut(s) 779, 1259
SchI GAGTC 1 cut(s) 1097
ScrFI CCNGG 2 cut(s) 825, 843
SduI GDGCHC 4 cut(s) 36, 264, 718, 892
SfaNI GCATC 5 cut(s) 338, 439, 682, 1000, 1022
SfcI CTRYAG 2 cut(s) 618, 657
SfuI TTCGAA 1 cut(s) 212
SinI GGWCC 1 cut(s) 779
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 349
SmoI CTYRAG 1 cut(s) 349
Sse9I AATT 8 cut(s) 364, 407, 426, 510, 1047, 1068, 1122, 1223
SsiI CCGC 5 cut(s) 149, 246, 483, 711, 1142
SspMI CTAG 2 cut(s) 708, 975
StyD4I CCNGG 2 cut(s) 823, 841
StyI CCWWGG 2 cut(s) 466, 793
TaaI ACNGT 3 cut(s) 316, 727, 922
TaiI ACGT 2 cut(s) 766, 787
TaqI TCGA 2 cut(s) 212, 1214
TasI AATT 8 cut(s) 364, 407, 426, 510, 1047, 1068, 1122, 1223
TauI GCSGC 3 cut(s) 249, 486, 1145
TfiI GAWTC 1 cut(s) 1114
Tru1I TTAA 4 cut(s) 279, 345, 423, 951
Tru9I TTAA 4 cut(s) 279, 345, 423, 951
TscAI CASTG 2 cut(s) 178, 869
TseFI GTSAC 3 cut(s) 938, 1089, 1102
Tsp45I GTSAC 3 cut(s) 938, 1089, 1102
TspDTI ATGAA 3 cut(s) 206, 758, 1073
TspRI CASTG 2 cut(s) 178, 869
Van91I CCANNNNNTGG 2 cut(s) 86, 788
VneI GTGCAC 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 779
XapI RAATTY 5 cut(s) 364, 407, 1047, 1068, 1223
XceI RCATGY 2 cut(s) 383, 544
XmnI GAANNNNTTC 1 cut(s) 804
XspI CTAG 2 cut(s) 708, 975
Zsp2I ATGCAT 1 cut(s) 1015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.