Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003338

Physical Location & Seq

Genomic Coordinates Reverse (-)

55682150 .. 55685633

Gene Structure 3484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG357900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGCAGGCTGCACAGGAAGTGGCCGAGGGGAAGCTAAATCAGCACTTTCCACTAGTTGTGTGGCAAACTGGTAGTGGAACACAAAGCAACATGAATGCCAATGAGGTCATTGCAAACAGAGCAGCTGAGATACTTGGACATAAGCGCGGCGAGAAGTTTGTGCATCCGAATGACCATGTTAATAGATCACAGTCGTCTAATGACACTTTCCCAACCGTCATGCACATTGCAACTGCGATGGAAGTAAATTCAAGACTGGTACCAAATTTGAAAACATTGCATTCTTCTCTACAACAAAAGTCGGATGAGTTCAAAGATATTGTTAAAATTGGACGCACTCACACACAAGATGCAACACCTTTGACTCTTGGGCAAGAGTTTAGCGGCTATTCTACACAGGTGAAGTATGGAATTGAGCGAGTCTTGTGCACTCTACCCCACATGTATCAGCTGGCACAGGGTGGTACTGCTGTTGGGACCGGATTGAATACAAAGAAGGGATTTGATGTAAAGATAGCTGCAGCAGTAGCTGATGAAACAAATTTACCATTTGTCACTGCAGAAAACAAGTTTGAAGCTTTGGCTGCACATGATGCTTTTGTGGAAACTAGTGGAGCCCTGAATACAGTTGCTACTTCTCTGATGAAAATAGCTAATGACATACGTTTGTTAGGAAGTGGTCCACGATGTGGTCTTGGTGAACTCATTCTTCCTGAAAATGAGCCTGGAAGCAGCATTATGCCGGGGAAGGTTAACCCAACCCAGTGTGAGGCTATCACAATGGTGTGTGCTCAGGTTATGGGTAACAATGTGGCCATTACAGTAGGTGGATCTAATGGTCATTTTGAACTAAATGTATTCAAGCCAATGATTGCTAGTGCTCTCCTACATTCTGTTAGATTACTTGGGGATGCATCTGCTTCCTTTGAAAAGAACTGTGTCAGAGGAATTGAAGCCAACAGGGAAAGAATCTCAAAGTTACTTCATGAGTCACTGATGTTGGTCACGTCCTTGAATCCTAAAATTGGTTATGACAATGCTGCGGCAGTTGCAAAGAAAGCCCACAAGGAAGGATCCACTTTGAAGGATGCTGCATTAAAACTTGGGGTGCTAACGAGTGAAGAGTTTGATAATCTTGTGGTGCCCGAGAAGATGATTGGCCCGTCTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0007097 GO:0008017 GO:0008092 GO:0008150 GO:0008569 GO:0009987 GO:0015629 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031534 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043621 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0046907 GO:0051012 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin Microtub_bd

Protein Analysis

390

Amino Acids

41.82

Weight (kDa)

6.36

Isoelectric Point (pI)

26.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lyase_1	PF00206	1 - 268	1.8e-103	Lyase
FumaraseC_C	PF10415	334 - 386	5.6e-24	Fumarase C C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003338)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47510 AT2G47510 AT2G47510 AT5G50950 AT5G50950 AT5G50950 AT5G50950
fragaria_vesca	FvH4_2g26121 FvH4_2g26121 FvH4_2g26140 FvH4_2g26140
malus_domestica	MD00G1140200.v1.1 MD03G1292300.v1.1
prunus_persica	Prupe.8G265300_v2.0.a1 Prupe.8G265300_v2.0.a1 Prupe.8G265300_v2.0.a1
pyrus_communis	pycom03g23150 pycom11g27280
rosa_chinensis	RchiOBHm_Chr6g0294511 RchiOBHm_Chr6g0294521
rosa_laevigata	RLG00000011863
rosa_multiflora	Rmu_ssc0000248.1_g000007
rosa_roxburghii	Rroxscaffold_7G00173260 Rroxscaffold_7G00173270
rosa_rugosa	Rorug06G0245500 Rorug06G0245500
rosa_samantha	Rh6AG357800 Rh6AG357900 Rh6BG364700 Rh6BG364800 Rh6CG371800 Rh6CG371900 Rh6DG358600 Rh6DG358700
rosa_wichuraiana	Rw6G031210 Rw6G031220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	259
AccB1I	GGYRCC	2 cut(s)	259, 1141
AccB7I	CCANNNNNTGG	1 cut(s)	689
AccII	CGCG	1 cut(s)	147
AciI	CCGC	3 cut(s)	147, 384, 1043
AclWI	GGATC	3 cut(s)	838, 1068, 1081
AcoI	YGGCCR	2 cut(s)	21, 813
AcsI	RAATTY	3 cut(s)	247, 265, 541
AdeI	CACNNNGTG	2 cut(s)	461, 689
AfaI	GTAC	2 cut(s)	261, 466
AfiI	CCNNNNNNNGG	3 cut(s)	689, 769, 1025
AflIII	ACRYGT	1 cut(s)	441
AhlI	ACTAGT	2 cut(s)	52, 608
AjiI	CACGTC	1 cut(s)	1008
AjnI	CCWGG	1 cut(s)	724
AleI	CACNNNNGTG	1 cut(s)	782
AluBI	AGCT	7 cut(s)	34, 125, 451, 518, 530, 578, 653
AluI	AGCT	7 cut(s)	34, 125, 451, 518, 530, 578, 653
Alw21I	GWGCWC	3 cut(s)	431, 793, 883
Alw44I	GTGCAC	1 cut(s)	427
AlwI	GGATC	3 cut(s)	838, 1068, 1081
AlwNI	CAGNNNCTG	1 cut(s)	530
Ama87I	CYCGRG	1 cut(s)	1145
AoxI	GGCC	3 cut(s)	21, 813, 1159
ApaLI	GTGCAC	1 cut(s)	427
ApeKI	GCWGC	8 cut(s)	8, 122, 518, 521, 584, 732, 1040, 1091
ApoI	RAATTY	3 cut(s)	247, 265, 541
Asp700I	GAANNNNTTC	1 cut(s)	705
Asp718I	GGTACC	1 cut(s)	259
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	3 cut(s)	477, 680, 1160
AsuC2I	CCSGG	1 cut(s)	744
AsuHPI	GGTGA	2 cut(s)	412, 710
AvaI	CYCGRG	1 cut(s)	1145
AvaII	GGWCC	2 cut(s)	477, 680
BaeGI	GKGCMC	2 cut(s)	431, 1146
BaeI	ACNNNNGTAYC	2 cut(s)	456, 489
BalI	TGGCCA	1 cut(s)	815
BamHI	GGATCC	1 cut(s)	1073
BanI	GGYRCC	2 cut(s)	259, 1141
BanII	GRGCYC	1 cut(s)	619
Bbv12I	GWGCWC	3 cut(s)	431, 793, 883
BbvI	GCAGC	7 cut(s)	134, 505, 533, 571, 744, 1027, 1078
BccI	CCATC	1 cut(s)	232
BcgI	CGANNNNNNTGC	2 cut(s)	408, 442
BciT130I	CCWGG	1 cut(s)	726
BcnI	CCSGG	1 cut(s)	744
BcuI	ACTAGT	2 cut(s)	52, 608
BfaI	CTAG	3 cut(s)	53, 609, 876
BfmI	CTRYAG	2 cut(s)	519, 558
Bme1390I	CCNGG	2 cut(s)	726, 744
Bme18I	GGWCC	2 cut(s)	477, 680
BmeT110I	CYCGRG	1 cut(s)	1145
BmgBI	CACGTC	1 cut(s)	1008
BmgT120I	GGNCC	3 cut(s)	477, 680, 1160
BmiI	GGNNCC	5 cut(s)	261, 478, 616, 1075, 1143
BmrFI	CCNGG	2 cut(s)	726, 744
BmrI	ACTGGG	1 cut(s)	757
BmsI	GCATC	6 cut(s)	172, 340, 583, 901, 923, 1078
BmuI	ACTGGG	1 cut(s)	757
Bpu10I	CCTNAGC	1 cut(s)	792
BpuMI	CCSGG	1 cut(s)	744
BsaJI	CCNNGG	2 cut(s)	24, 743
BsaWI	WCCGGW	1 cut(s)	479
Bsc4I	CCNNNNNNNGG	3 cut(s)	689, 769, 1025
Bse1I	ACTGG	3 cut(s)	73, 261, 763
Bse3DI	GCAATG	3 cut(s)	108, 225, 275
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	2 cut(s)	24, 743
BseGI	GGATG	4 cut(s)	163, 310, 916, 1093
BseLI	CCNNNNNNNGG	3 cut(s)	689, 769, 1025
BseMI	GCAATG	3 cut(s)	108, 225, 275
BseMII	CTCAG	2 cut(s)	117, 806
BseNI	ACTGG	3 cut(s)	73, 261, 763
BseSI	GKGCMC	2 cut(s)	431, 1146
BseXI	GCAGC	7 cut(s)	134, 505, 533, 571, 744, 1027, 1078
BsgI	GTGCAG	1 cut(s)	570
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	3 cut(s)	23, 815, 1161
BshNI	GGYRCC	2 cut(s)	259, 1141
BsiHKAI	GWGCWC	3 cut(s)	431, 793, 883
BsiHKCI	CYCGRG	1 cut(s)	1145
BsiSI	CCGG	2 cut(s)	480, 743
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	3 cut(s)	689, 769, 1025
BsmFI	GGGAC	1 cut(s)	490
BsmI	GAATGC	2 cut(s)	100, 280
BsnI	GGCC	3 cut(s)	23, 815, 1161
BsoBI	CYCGRG	1 cut(s)	1145
Bsp1286I	GDGCHC	5 cut(s)	431, 619, 793, 883, 1146
Bsp143I	GATC	3 cut(s)	185, 830, 1073
BspACI	CCGC	3 cut(s)	147, 384, 1043
BspANI	GGCC	3 cut(s)	23, 815, 1161
BspCNI	CTCAG	2 cut(s)	118, 805
BspFNI	CGCG	1 cut(s)	147
BspHI	TCATGA	1 cut(s)	985
BspLI	GGNNCC	5 cut(s)	261, 478, 616, 1075, 1143
BspMAI	CTGCAG	2 cut(s)	523, 562
BspPI	GGATC	3 cut(s)	838, 1068, 1081
BspT107I	GGYRCC	2 cut(s)	259, 1141
BsrDI	GCAATG	3 cut(s)	108, 225, 275
BsrI	ACTGG	3 cut(s)	73, 261, 763
BssECI	CCNNGG	2 cut(s)	24, 743
BssMI	GATC	3 cut(s)	185, 830, 1073
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	5 cut(s)	192, 217, 628, 823, 938
Bst6I	CTCTTC	1 cut(s)	1116
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstC8I	GCNNGC	2 cut(s)	6, 453
BstDEI	CTNAG	2 cut(s)	126, 792
BstF5I	GGATG	4 cut(s)	163, 310, 916, 1093
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	3 cut(s)	188, 833, 1076
BstMBI	GATC	3 cut(s)	185, 830, 1073
BstMWI	GCNNNNNNNGC	7 cut(s)	40, 119, 527, 584, 593, 1049, 1058
BstNI	CCWGG	1 cut(s)	726
BstNSI	RCATGY	1 cut(s)	445
BstSCI	CCNGG	2 cut(s)	724, 742
BstSFI	CTRYAG	2 cut(s)	519, 558
BstSLI	GKGCMC	2 cut(s)	431, 1146
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	7 cut(s)	134, 505, 533, 571, 744, 1027, 1078
BstX2I	RGATCY	2 cut(s)	830, 1073
BstYI	RGATCY	2 cut(s)	830, 1073
BsuRI	GGCC	3 cut(s)	23, 815, 1161
BtgZI	GCGATG	1 cut(s)	251
BtrI	CACGTC	1 cut(s)	1008
BtsCI	GGATG	4 cut(s)	163, 310, 916, 1093
BtsI	GCAGTG	1 cut(s)	555
BtsIMutI	CAGTG	3 cut(s)	555, 770, 992
Cac8I	GCNNGC	2 cut(s)	6, 453
CaiI	CAGNNNCTG	1 cut(s)	530
CciI	TCATGA	1 cut(s)	985
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	3 cut(s)	477, 680, 1160
CseI	GACGC	1 cut(s)	342
Csp6I	GTAC	2 cut(s)	260, 465
CviAII	CATG	6 cut(s)	91, 176, 220, 442, 590, 986
CviQI	GTAC	2 cut(s)	260, 465
DdeI	CTNAG	2 cut(s)	126, 792
DpnI	GATC	3 cut(s)	187, 832, 1075
DpnII	GATC	3 cut(s)	185, 830, 1073
DraIII	CACNNNGTG	2 cut(s)	461, 689
EaeI	YGGCCR	2 cut(s)	21, 813
Eam1104I	CTCTTC	1 cut(s)	1116
EarI	CTCTTC	1 cut(s)	1116
Eco24I	GRGCYC	1 cut(s)	619
Eco47I	GGWCC	2 cut(s)	477, 680
Eco88I	CYCGRG	1 cut(s)	1145
EcoRII	CCWGG	1 cut(s)	724
EcoT22I	ATGCAT	1 cut(s)	916
EcoT38I	GRGCYC	1 cut(s)	619
FaeI	CATG	6 cut(s)	94, 179, 223, 445, 593, 989
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	6 cut(s)	90, 175, 219, 441, 589, 985
FokI	GGATG	4 cut(s)	150, 317, 923, 1100
FriOI	GRGCYC	1 cut(s)	619
FspBI	CTAG	3 cut(s)	53, 609, 876
GlaI	GCGC	1 cut(s)	146
HaeIII	GGCC	3 cut(s)	23, 815, 1161
HapII	CCGG	2 cut(s)	480, 743
HgaI	GACGC	1 cut(s)	342
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	6 cut(s)	94, 179, 223, 445, 593, 989
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HindIII	AAGCTT	1 cut(s)	576
HinfI	GANTC	5 cut(s)	364, 420, 969, 989, 1015
HpaI	GTTAAC	1 cut(s)	754
HpaII	CCGG	2 cut(s)	480, 743
HphI	GGTGA	2 cut(s)	412, 710
Hpy166II	GTNNAC	4 cut(s)	429, 683, 701, 754
Hpy188I	TCNGA	5 cut(s)	168, 304, 642, 944, 1168
Hpy188III	TCNNGA	3 cut(s)	252, 713, 986
Hpy8I	GTNNAC	4 cut(s)	429, 683, 701, 754
HpyAV	CCTTC	4 cut(s)	490, 742, 1064, 1078
HpyCH4III	ACNGT	5 cut(s)	192, 217, 628, 823, 938
HpyCH4IV	ACGT	2 cut(s)	664, 1007
HpyF10VI	GCNNNNNNNGC	7 cut(s)	40, 119, 527, 584, 593, 1049, 1058
HpyF3I	CTNAG	2 cut(s)	126, 792
HpySE526I	ACGT	2 cut(s)	664, 1007
Hsp92II	CATG	6 cut(s)	94, 179, 223, 445, 593, 989
HspAI	GCGC	1 cut(s)	145
KpnI	GGTACC	1 cut(s)	263
KspAI	GTTAAC	1 cut(s)	754
Kzo9I	GATC	3 cut(s)	185, 830, 1073
LmnI	GCTCC	1 cut(s)	614
Lsp1109I	GCAGC	7 cut(s)	134, 505, 533, 571, 744, 1027, 1078
LweI	GCATC	6 cut(s)	172, 340, 583, 901, 923, 1078
MaeI	CTAG	3 cut(s)	53, 609, 876
MaeII	ACGT	2 cut(s)	664, 1007
MaeIII	GTNAC	5 cut(s)	553, 803, 978, 990, 1003
MalI	GATC	3 cut(s)	187, 832, 1075
MboI	GATC	3 cut(s)	185, 830, 1073
MboII	GAAGA	4 cut(s)	276, 701, 1133, 1162
MflI	RGATCY	2 cut(s)	830, 1073
MhlI	GDGCHC	5 cut(s)	431, 619, 793, 883, 1146
MlsI	TGGCCA	1 cut(s)	815
MluCI	AATT	7 cut(s)	247, 265, 327, 411, 541, 948, 1023
MluNI	TGGCCA	1 cut(s)	815
MlyI	GAGTC	3 cut(s)	358, 429, 998
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	4 cut(s)	19, 97, 763, 938
Mox20I	TGGCCA	1 cut(s)	815
Mph1103I	ATGCAT	1 cut(s)	916
MroXI	GAANNNNTTC	1 cut(s)	705
MscI	TGGCCA	1 cut(s)	815
MseI	TTAA	4 cut(s)	180, 324, 753, 1097
MslI	CAYNNNNRTG	2 cut(s)	168, 782
Msp20I	TGGCCA	1 cut(s)	815
MspA1I	CMGCKG	2 cut(s)	125, 451
MspI	CCGG	2 cut(s)	480, 743
MspR9I	CCNGG	2 cut(s)	726, 744
Mva1269I	GAATGC	2 cut(s)	100, 280
MvaI	CCWGG	1 cut(s)	726
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	7 cut(s)	40, 119, 527, 584, 593, 1049, 1058
NciI	CCSGG	1 cut(s)	744
NdeII	GATC	3 cut(s)	185, 830, 1073
NlaIII	CATG	6 cut(s)	94, 179, 223, 445, 593, 989
NlaIV	GGNNCC	5 cut(s)	261, 478, 616, 1075, 1143
NmeAIII	GCCGAG	1 cut(s)	49
NmuCI	GTSAC	3 cut(s)	553, 990, 1003
NsiI	ATGCAT	1 cut(s)	916
NspI	RCATGY	1 cut(s)	445
OliI	CACNNNNGTG	1 cut(s)	782
PagI	TCATGA	1 cut(s)	985
PciI	ACATGT	1 cut(s)	441
PctI	GAATGC	2 cut(s)	100, 280
PdmI	GAANNNNTTC	1 cut(s)	705
PfeI	GAWTC	2 cut(s)	969, 1015
PflMI	CCANNNNNTGG	1 cut(s)	689
PleI	GAGTC	3 cut(s)	358, 428, 997
PpsI	GAGTC	3 cut(s)	358, 428, 997
PscI	ACATGT	1 cut(s)	441
Psp6I	CCWGG	1 cut(s)	724
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	5 cut(s)	261, 478, 616, 1075, 1143
PspPI	GGNCC	3 cut(s)	477, 680, 1160
PstI	CTGCAG	2 cut(s)	523, 562
PstNI	CAGNNNCTG	1 cut(s)	530
PsuI	RGATCY	2 cut(s)	830, 1073
PvuII	CAGCTG	2 cut(s)	125, 451
RsaI	GTAC	2 cut(s)	261, 466
RsaNI	GTAC	2 cut(s)	260, 465
RseI	CAYNNNNRTG	2 cut(s)	168, 782
SaqAI	TTAA	4 cut(s)	180, 324, 753, 1097
Sau3AI	GATC	3 cut(s)	185, 830, 1073
Sau96I	GGNCC	3 cut(s)	477, 680, 1160
SchI	GAGTC	3 cut(s)	358, 429, 998
ScrFI	CCNGG	2 cut(s)	726, 744
SduI	GDGCHC	5 cut(s)	431, 619, 793, 883, 1146
SfaNI	GCATC	6 cut(s)	172, 340, 583, 901, 923, 1078
SfcI	CTRYAG	2 cut(s)	519, 558
SinI	GGWCC	2 cut(s)	477, 680
SmiMI	CAYNNNNRTG	2 cut(s)	168, 782
SpeI	ACTAGT	2 cut(s)	52, 608
Sse9I	AATT	7 cut(s)	247, 265, 327, 411, 541, 948, 1023
SsiI	CCGC	3 cut(s)	147, 384, 1043
SspMI	CTAG	3 cut(s)	53, 609, 876
StyD4I	CCNGG	2 cut(s)	724, 742
TaaI	ACNGT	5 cut(s)	192, 217, 628, 823, 938
TaiI	ACGT	2 cut(s)	667, 1010
TasI	AATT	7 cut(s)	247, 265, 327, 411, 541, 948, 1023
TauI	GCSGC	3 cut(s)	150, 387, 1046
TfiI	GAWTC	2 cut(s)	969, 1015
Tru1I	TTAA	4 cut(s)	180, 324, 753, 1097
Tru9I	TTAA	4 cut(s)	180, 324, 753, 1097
TscAI	CASTG	3 cut(s)	562, 770, 999
TseFI	GTSAC	3 cut(s)	553, 990, 1003
TseI	GCWGC	8 cut(s)	8, 122, 518, 521, 584, 732, 1040, 1091
Tsp45I	GTSAC	3 cut(s)	553, 990, 1003
TspDTI	ATGAA	4 cut(s)	107, 549, 659, 974
TspRI	CASTG	3 cut(s)	562, 770, 999
Van91I	CCANNNNNTGG	1 cut(s)	689
VneI	GTGCAC	1 cut(s)	427
VpaK11BI	GGWCC	2 cut(s)	477, 680
XapI	RAATTY	3 cut(s)	247, 265, 541
XceI	RCATGY	1 cut(s)	445
XcmI	CCANNNNNNNNNTGG	1 cut(s)	57
XmnI	GAANNNNTTC	1 cut(s)	705
XspI	CTAG	3 cut(s)	53, 609, 876
Zsp2I	ATGCAT	1 cut(s)	916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.