Prupe.8G265300_v2.0.a1

Fumarate hydratase 1

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
22219511 .. 22224016
4506 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G265300.3

Sequence Viewer

Length: 1482 bp
ATGGCGATGTACATCATATCGCGGCGAGTAGTAGGTGGATCGACGCCGTCAACTGCGTTCCGTTATGCTACTTGTTGGAGACCCTATTCGACGTCGTTTAGAGAGGAAAGAGACACCTTTGGACCCATTCTCGTTCCCTCAGACAAGTTGTGGGGGGCGCAAACTCAAAGATCGTTGCAGAATTTCGATATCGGTGGCGAGCGTGAACGAATGCCCGAACCTATTGTTCGCGCCTTTGGCGTACTCAAAAAATGTGCTGCCAAGGTGAACATGGAGTATGGTCTTGATCCAACTATAGGCAAAGCAATAATGCAAGCTGCCCAAGAAGTCGCCGAGGGAAAGCTAAACCAGCACTTTCCACTTGTTGTATGGCAAACTGGCAGTGGAACCCAAAGTAACATGAATGCCAATGAGGTCATTGCGAACAGAGCAGCTGAGATACTTGGCCATAAGCGTGGTGAAAAGATTGTCCACCCAAATGACCATGTTAATAGATCACAGTCTTCTAATGACACTTTTCCAACTGTCATGCACATTGCGTCTGCAGTGGAAATTAATTCAAGACTAATACCAAATTTGAGAACATTGCATACTTCTCTACATTCAAAGTCAGATGAATTCAAAGATATTGTTAAAATTGGACGCACTCACACGCAAGATGCAACACCTTTGACTCTTGGGCAAGAATTCAGTGGCTATTCAACACAAGTGAAGTATGGAATTGACCGAGTCTTGTGCACTCTACCCCGCATGTATCAGCTTGCACAGGGTGGTACTGCTGTTGGGACTGGATTGAACACAAAGAAGGGATTTGATGTAAAGATAGCTGCGGCAGTAGCTGAGGAAACAAACTTACCATTTGTCACCGCCGAAAACAAGTTTGAAGCTTTGGCTGCACATGATGCTTTTGTTGAAACTAGCGGAGCCCTAAATACAGTTGCTACTTCTCTGATGAAAATTGCAAATGACATACGTTTATTAGGAAGTGGTCCACGTTGCGGCCTTGGTGAACTCATTCTCCCTGAAAACGAGCCTGGCAGCAGCATTATGCCTGGCAAGGTTAACCCTACTCAGTGTGAGGCTCTCACAATGGTCTGTGCTCAGGTTTTTGGTAACCATGTGGCCATTACAGTAGGTGGATCAAATGGTCACTTTGAACTTAATGTATTCAAGCCAATGATTGCTAGTGGTCTCCTACATTCTGTGAGATTGCTTGGGGATGCATCAGCTTCCTTTGAAAAGAACTGTGTAAGAGGAATCAAAGCTAATAGGGAAAGAATTTCAAAATTACTTCATGAGTCACTAATGTTGGTCACATCGTTGAATCCTAAAATTGGTTATGACAATGCTGCTTCAGTTGCAAAGAAAGCCCACAAGGAGGGATCCACTTTGAAGGAAGCTGCATTGAAACTTGGAGTGCTAACCAGTGAAGAATTTGATACACTTGTGGTGCCTGAGAAGATGATTGGCCCATCTGACTGA

Protein Analysis

494

Amino Acids

53.41

Weight (kDa)

8.54

Isoelectric Point (pI)

27.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 95
AccB1I GGYRCC 1 cut(s) 1450
AccII CGCG 2 cut(s) 22, 231
AciI CCGC 6 cut(s) 22, 748, 830, 867, 921, 999
AclWI GGATC 5 cut(s) 46, 281, 1147, 1377, 1390
AcoI YGGCCR 2 cut(s) 445, 1122
AcsI RAATTY 6 cut(s) 181, 574, 617, 686, 1278, 1433
AcuI CTGAAG 1 cut(s) 1338
AcyI GRCGYC 2 cut(s) 44, 92
AdeI CACNNNGTG 1 cut(s) 770
AfaI GTAC 3 cut(s) 11, 243, 775
AfiI CCNNNNNNNGG 4 cut(s) 296, 998, 1334, 1378
AjnI CCWGG 2 cut(s) 1033, 1051
AloI GAACNNNNNNTCC 2 cut(s) 1002, 1034
Alw21I GWGCWC 2 cut(s) 740, 1102
Alw26I GTCTC 3 cut(s) 73, 105, 1196
Alw44I GTGCAC 1 cut(s) 736
AlwI GGATC 5 cut(s) 46, 281, 1147, 1377, 1390
AlwNI CAGNNNCTG 1 cut(s) 839
AoxI GGCC 4 cut(s) 445, 1000, 1122, 1468
ApaLI GTGCAC 1 cut(s) 736
ApeKI GCWGC 9 cut(s) 257, 317, 431, 827, 893, 1038, 1041, 1349, 1400
ApoI RAATTY 6 cut(s) 181, 574, 617, 686, 1278, 1433
AseI ATTAAT 1 cut(s) 555
Asp700I GAANNNNTTC 1 cut(s) 1014
AspLEI GCGC 2 cut(s) 160, 233
AspS9I GGNCC 3 cut(s) 122, 989, 1469
AsuHPI GGTGA 4 cut(s) 277, 470, 856, 1019
AvaII GGWCC 2 cut(s) 122, 989
BaeGI GKGCMC 1 cut(s) 740
BaeI ACNNNNGTAYC 4 cut(s) 765, 798, 1431, 1464
BalI TGGCCA 2 cut(s) 447, 1124
BamHI GGATCC 1 cut(s) 1382
BanI GGYRCC 1 cut(s) 1450
BanII GRGCYC 1 cut(s) 928
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 2 cut(s) 740, 1102
BbvCI CCTCAGC 1 cut(s) 840
BbvI GCAGC 9 cut(s) 244, 304, 443, 814, 880, 1050, 1053, 1336, 1387
BccI CCATC 1 cut(s) 1480
BceAI ACGGC 1 cut(s) 31
BcgI CGANNNNNNTGC 2 cut(s) 717, 751
BciT130I CCWGG 2 cut(s) 1035, 1053
BcoDI GTCTC 3 cut(s) 73, 105, 1196
BfaI CTAG 2 cut(s) 918, 1185
BfmI CTRYAG 2 cut(s) 294, 543
Bme1390I CCNGG 2 cut(s) 1035, 1053
Bme18I GGWCC 2 cut(s) 122, 989
BmgT120I GGNCC 3 cut(s) 122, 989, 1469
BmiI GGNNCC 5 cut(s) 124, 388, 925, 1384, 1452
BmrFI CCNGG 2 cut(s) 1035, 1053
BmsI GCATC 4 cut(s) 649, 892, 1210, 1232
BpiI GAAGAC 1 cut(s) 495
Bpu10I CCTNAGC 2 cut(s) 840, 1101
BsaBI GATNNNNATC 1 cut(s) 11
BsaHI GRCGYC 2 cut(s) 44, 92
BsaI GGTCTC 2 cut(s) 73, 1196
BsaJI CCNNGG 3 cut(s) 261, 333, 1003
BsaXI ACNNNNNCTCC 2 cut(s) 1002, 1032
Bsc4I CCNNNNNNNGG 4 cut(s) 296, 998, 1334, 1378
Bse1I ACTGG 3 cut(s) 382, 793, 1425
Bse3DI GCAATG 3 cut(s) 417, 534, 584
Bse8I GATNNNNATC 1 cut(s) 11
BseBI CCWGG 2 cut(s) 1035, 1053
BseDI CCNNGG 3 cut(s) 261, 333, 1003
BseGI GGATG 1 cut(s) 1225
BseJI GATNNNNATC 1 cut(s) 11
BseLI CCNNNNNNNGG 4 cut(s) 296, 998, 1334, 1378
BseMI GCAATG 3 cut(s) 417, 534, 584
BseMII CTCAG 6 cut(s) 153, 426, 831, 1085, 1115, 1446
BseNI ACTGG 3 cut(s) 382, 793, 1425
BseSI GKGCMC 1 cut(s) 740
BseXI GCAGC 9 cut(s) 244, 304, 443, 814, 880, 1050, 1053, 1336, 1387
BsgI GTGCAG 1 cut(s) 879
Bsh1236I CGCG 2 cut(s) 22, 231
BshFI GGCC 4 cut(s) 447, 1002, 1124, 1470
BshNI GGYRCC 1 cut(s) 1450
BsiHKAI GWGCWC 2 cut(s) 740, 1102
BslFI GGGAC 1 cut(s) 799
BslI CCNNNNNNNGG 4 cut(s) 296, 998, 1334, 1378
BsmAI GTCTC 3 cut(s) 73, 105, 1196
BsmFI GGGAC 1 cut(s) 799
BsmI GAATGC 2 cut(s) 216, 409
BsnI GGCC 4 cut(s) 447, 1002, 1124, 1470
Bso31I GGTCTC 2 cut(s) 73, 1196
Bsp1286I GDGCHC 3 cut(s) 740, 928, 1102
Bsp1407I TGTACA 1 cut(s) 9
Bsp143I GATC 6 cut(s) 38, 170, 286, 494, 1139, 1382
BspACI CCGC 6 cut(s) 22, 748, 830, 867, 921, 999
BspANI GGCC 4 cut(s) 447, 1002, 1124, 1470
BspCNI CTCAG 6 cut(s) 152, 427, 832, 1084, 1114, 1447
BspFNI CGCG 2 cut(s) 22, 231
BspHI TCATGA 1 cut(s) 1294
BspLI GGNNCC 5 cut(s) 124, 388, 925, 1384, 1452
BspMAI CTGCAG 1 cut(s) 547
BspPI GGATC 5 cut(s) 46, 281, 1147, 1377, 1390
BspT107I GGYRCC 1 cut(s) 1450
BspTNI GGTCTC 2 cut(s) 73, 1196
BsrDI GCAATG 3 cut(s) 417, 534, 584
BsrGI TGTACA 1 cut(s) 9
BsrI ACTGG 3 cut(s) 382, 793, 1425
BssECI CCNNGG 3 cut(s) 261, 333, 1003
BssMI GATC 6 cut(s) 38, 170, 286, 494, 1139, 1382
BssNI GRCGYC 2 cut(s) 44, 92
BssT1I CCWWGG 2 cut(s) 261, 1003
Bst2UI CCWGG 2 cut(s) 1035, 1053
Bst4CI ACNGT 5 cut(s) 501, 526, 937, 1132, 1247
BstACI GRCGYC 2 cut(s) 44, 92
BstAPI GCANNNNNTGC 1 cut(s) 902
BstAUI TGTACA 1 cut(s) 9
BstC8I GCNNGC 3 cut(s) 200, 315, 762
BstDEI CTNAG 6 cut(s) 139, 435, 840, 1071, 1101, 1455
BstEII GGTNACC 1 cut(s) 1112
BstF5I GGATG 1 cut(s) 1225
BstFNI CGCG 2 cut(s) 22, 231
BstHHI GCGC 2 cut(s) 160, 233
BstKTI GATC 6 cut(s) 41, 173, 289, 497, 1142, 1385
BstMAI GTCTC 3 cut(s) 73, 105, 1196
BstMBI GATC 6 cut(s) 38, 170, 286, 494, 1139, 1382
BstMWI GCNNNNNNNGC 8 cut(s) 237, 349, 428, 836, 893, 902, 1358, 1367
BstNI CCWGG 2 cut(s) 1035, 1053
BstNSI RCATGY 1 cut(s) 754
BstPI GGTNACC 1 cut(s) 1112
BstSCI CCNGG 2 cut(s) 1033, 1051
BstSFI CTRYAG 2 cut(s) 294, 543
BstSLI GKGCMC 1 cut(s) 740
BstUI CGCG 2 cut(s) 22, 231
BstV1I GCAGC 9 cut(s) 244, 304, 443, 814, 880, 1050, 1053, 1336, 1387
BstV2I GAAGAC 1 cut(s) 495
BstX2I RGATCY 1 cut(s) 1382
BstXI CCANNNNNNTGG 1 cut(s) 455
BstYI RGATCY 1 cut(s) 1382
BsuRI GGCC 4 cut(s) 447, 1002, 1124, 1470
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 1225
BtsI GCAGTG 2 cut(s) 388, 552
BtsIMutI CAGTG 5 cut(s) 388, 552, 697, 1079, 1432
Cac8I GCNNGC 3 cut(s) 200, 315, 762
CaiI CAGNNNCTG 1 cut(s) 839
CciI TCATGA 1 cut(s) 1294
CfoI GCGC 2 cut(s) 160, 233
Cfr13I GGNCC 3 cut(s) 122, 989, 1469
CseI GACGC 3 cut(s) 52, 528, 651
Csp6I GTAC 3 cut(s) 10, 242, 774
CviAII CATG 8 cut(s) 271, 400, 485, 529, 751, 899, 1118, 1295
CviQI GTAC 3 cut(s) 10, 242, 774
DdeI CTNAG 6 cut(s) 139, 435, 840, 1071, 1101, 1455
DpnI GATC 6 cut(s) 40, 172, 288, 496, 1141, 1384
DpnII GATC 6 cut(s) 38, 170, 286, 494, 1139, 1382
DraIII CACNNNGTG 1 cut(s) 770
EaeI YGGCCR 2 cut(s) 445, 1122
Eco130I CCWWGG 2 cut(s) 261, 1003
Eco24I GRGCYC 1 cut(s) 928
Eco31I GGTCTC 2 cut(s) 73, 1196
Eco32I GATATC 1 cut(s) 190
Eco47I GGWCC 2 cut(s) 122, 989
Eco57I CTGAAG 1 cut(s) 1338
Eco91I GGTNACC 1 cut(s) 1112
EcoO65I GGTNACC 1 cut(s) 1112
EcoRI GAATTC 2 cut(s) 617, 686
EcoRII CCWGG 2 cut(s) 1033, 1051
EcoRV GATATC 1 cut(s) 190
EcoT14I CCWWGG 2 cut(s) 261, 1003
EcoT22I ATGCAT 1 cut(s) 1225
EcoT38I GRGCYC 1 cut(s) 928
ErhI CCWWGG 2 cut(s) 261, 1003
FaeI CATG 8 cut(s) 274, 403, 488, 532, 754, 902, 1121, 1298
FaqI GGGAC 1 cut(s) 799
FatI CATG 8 cut(s) 270, 399, 484, 528, 750, 898, 1117, 1294
FauI CCCGC 1 cut(s) 755
FokI GGATG 1 cut(s) 1232
FriOI GRGCYC 1 cut(s) 928
FspBI CTAG 2 cut(s) 918, 1185
GlaI GCGC 2 cut(s) 159, 232
HaeIII GGCC 4 cut(s) 447, 1002, 1124, 1470
HgaI GACGC 3 cut(s) 52, 528, 651
HhaI GCGC 2 cut(s) 160, 233
Hin1I GRCGYC 2 cut(s) 44, 92
Hin1II CATG 8 cut(s) 274, 403, 488, 532, 754, 902, 1121, 1298
Hin6I GCGC 2 cut(s) 158, 231
HinP1I GCGC 2 cut(s) 158, 231
HincII GTYRAC 2 cut(s) 51, 1063
HindII GTYRAC 2 cut(s) 51, 1063
HindIII AAGCTT 1 cut(s) 885
HinfI GANTC 5 cut(s) 673, 729, 1257, 1298, 1324
HpaI GTTAAC 1 cut(s) 1063
HphI GGTGA 4 cut(s) 277, 470, 856, 1019
Hpy166II GTNNAC 8 cut(s) 51, 206, 268, 472, 738, 992, 1010, 1063
Hpy188I TCNGA 4 cut(s) 142, 613, 951, 1477
Hpy188III TCNNGA 3 cut(s) 284, 561, 1295
Hpy8I GTNNAC 8 cut(s) 51, 206, 268, 472, 738, 992, 1010, 1063
Hpy99I CGWCG 3 cut(s) 46, 94, 97
HpyAV CCTTC 2 cut(s) 799, 1387
HpyCH4III ACNGT 5 cut(s) 501, 526, 937, 1132, 1247
HpyCH4IV ACGT 3 cut(s) 92, 973, 994
HpyF10VI GCNNNNNNNGC 8 cut(s) 237, 349, 428, 836, 893, 902, 1358, 1367
HpyF3I CTNAG 6 cut(s) 139, 435, 840, 1071, 1101, 1455
HpySE526I ACGT 3 cut(s) 92, 973, 994
Hsp92I GRCGYC 2 cut(s) 44, 92
Hsp92II CATG 8 cut(s) 274, 403, 488, 532, 754, 902, 1121, 1298
HspAI GCGC 2 cut(s) 158, 231
KspAI GTTAAC 1 cut(s) 1063
Kzo9I GATC 6 cut(s) 38, 170, 286, 494, 1139, 1382
LmnI GCTCC 1 cut(s) 923
Lsp1109I GCAGC 9 cut(s) 244, 304, 443, 814, 880, 1050, 1053, 1336, 1387
LweI GCATC 4 cut(s) 649, 892, 1210, 1232
MaeI CTAG 2 cut(s) 918, 1185
MaeII ACGT 3 cut(s) 92, 973, 994
MaeIII GTNAC 6 cut(s) 395, 862, 1112, 1148, 1299, 1312
MalI GATC 6 cut(s) 40, 172, 288, 496, 1141, 1384
MboI GATC 6 cut(s) 38, 170, 286, 494, 1139, 1382
MboII GAAGA 3 cut(s) 495, 1442, 1471
MflI RGATCY 1 cut(s) 1382
MhlI GDGCHC 3 cut(s) 740, 928, 1102
MlsI TGGCCA 2 cut(s) 447, 1124
MluNI TGGCCA 2 cut(s) 447, 1124
MlyI GAGTC 3 cut(s) 667, 738, 1307
MmeI TCCRAC 3 cut(s) 56, 314, 545
MnlI CCTC 8 cut(s) 97, 148, 328, 406, 835, 1072, 1247, 1372
Mox20I TGGCCA 2 cut(s) 447, 1124
Mph1103I ATGCAT 1 cut(s) 1225
MroXI GAANNNNTTC 1 cut(s) 1014
MscI TGGCCA 2 cut(s) 447, 1124
MseI TTAA 5 cut(s) 489, 555, 633, 1062, 1161
MslI CAYNNNNRTG 2 cut(s) 453, 477
Msp20I TGGCCA 2 cut(s) 447, 1124
MspA1I CMGCKG 1 cut(s) 434
MspR9I CCNGG 2 cut(s) 1035, 1053
Mva1269I GAATGC 2 cut(s) 216, 409
MvaI CCWGG 2 cut(s) 1035, 1053
MvnI CGCG 2 cut(s) 22, 231
MwoI GCNNNNNNNGC 8 cut(s) 237, 349, 428, 836, 893, 902, 1358, 1367
NdeII GATC 6 cut(s) 38, 170, 286, 494, 1139, 1382
NlaIII CATG 8 cut(s) 274, 403, 488, 532, 754, 902, 1121, 1298
NlaIV GGNNCC 5 cut(s) 124, 388, 925, 1384, 1452
NmeAIII GCCGAG 1 cut(s) 358
NmuCI GTSAC 4 cut(s) 862, 1148, 1299, 1312
NsiI ATGCAT 1 cut(s) 1225
NspI RCATGY 1 cut(s) 754
PagI TCATGA 1 cut(s) 1294
PctI GAATGC 2 cut(s) 216, 409
PdmI GAANNNNTTC 1 cut(s) 1014
PfeI GAWTC 2 cut(s) 1257, 1324
PflFI GACNNNGTC 2 cut(s) 46, 728
PleI GAGTC 3 cut(s) 667, 737, 1306
PpsI GAGTC 3 cut(s) 667, 737, 1306
PshBI ATTAAT 1 cut(s) 555
Psp6I CCWGG 2 cut(s) 1033, 1051
PspEI GGTNACC 1 cut(s) 1112
PspGI CCWGG 2 cut(s) 1033, 1051
PspN4I GGNNCC 5 cut(s) 124, 388, 925, 1384, 1452
PspPI GGNCC 3 cut(s) 122, 989, 1469
PsrI GAACNNNNNNTAC 2 cut(s) 574, 606
PstI CTGCAG 1 cut(s) 547
PstNI CAGNNNCTG 1 cut(s) 839
PsuI RGATCY 1 cut(s) 1382
PsyI GACNNNGTC 2 cut(s) 46, 728
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 3 cut(s) 11, 243, 775
RsaNI GTAC 3 cut(s) 10, 242, 774
RseI CAYNNNNRTG 2 cut(s) 453, 477
SaqAI TTAA 5 cut(s) 489, 555, 633, 1062, 1161
Sau3AI GATC 6 cut(s) 38, 170, 286, 494, 1139, 1382
Sau96I GGNCC 3 cut(s) 122, 989, 1469
SchI GAGTC 3 cut(s) 667, 738, 1307
ScrFI CCNGG 2 cut(s) 1035, 1053
SduI GDGCHC 3 cut(s) 740, 928, 1102
SfaNI GCATC 4 cut(s) 649, 892, 1210, 1232
SfcI CTRYAG 2 cut(s) 294, 543
SinI GGWCC 2 cut(s) 122, 989
SmiMI CAYNNNNRTG 2 cut(s) 453, 477
SsiI CCGC 6 cut(s) 22, 748, 830, 867, 921, 999
SspMI CTAG 2 cut(s) 918, 1185
StyD4I CCNGG 2 cut(s) 1033, 1051
StyI CCWWGG 2 cut(s) 261, 1003
TaaI ACNGT 5 cut(s) 501, 526, 937, 1132, 1247
TaiI ACGT 3 cut(s) 95, 976, 997
TaqI TCGA 3 cut(s) 41, 89, 186
TaqII GACCGA 1 cut(s) 741
TatI WGTACW 1 cut(s) 9
TauI GCSGC 3 cut(s) 25, 833, 1002
TfiI GAWTC 2 cut(s) 1257, 1324
Tru1I TTAA 5 cut(s) 489, 555, 633, 1062, 1161
Tru9I TTAA 5 cut(s) 489, 555, 633, 1062, 1161
TscAI CASTG 5 cut(s) 388, 552, 697, 1079, 1432
TseFI GTSAC 4 cut(s) 862, 1148, 1299, 1312
TseI GCWGC 9 cut(s) 257, 317, 431, 827, 893, 1038, 1041, 1349, 1400
Tsp45I GTSAC 4 cut(s) 862, 1148, 1299, 1312
TspDTI ATGAA 4 cut(s) 416, 630, 968, 1283
TspGWI ACGGA 1 cut(s) 50
TspRI CASTG 5 cut(s) 388, 552, 697, 1079, 1432
Tth111I GACNNNGTC 2 cut(s) 46, 728
VneI GTGCAC 1 cut(s) 736
VpaK11BI GGWCC 2 cut(s) 122, 989
VspI ATTAAT 1 cut(s) 555
XapI RAATTY 6 cut(s) 181, 574, 617, 686, 1278, 1433
XceI RCATGY 1 cut(s) 754
XcmI CCANNNNNNNNNTGG 2 cut(s) 268, 366
XmnI GAANNNNTTC 1 cut(s) 1014
XspI CTAG 2 cut(s) 918, 1185
ZraI GACGTC 1 cut(s) 93
Zsp2I ATGCAT 1 cut(s) 1225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.