FvH4_2g26640

Peptidase family M20/M25/M40

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
21360525 .. 21364373
3849 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26640.t2

Sequence Viewer

Length: 1308 bp
ATGTATACTCCTCCCAGCTCTATCATCGTCTTCACACTTATCCTCATCGCCACCGGGGCCCACCCGGAGCAACCCGAACCCGAACCCGAAACTCCCGTTACCCGCTTCCAGACCTACCTCCGGATCAAAACGGCTCACCCGAACCCGGACTACGCCTCCGCCGTGTCCTTCCTCAAATCCCAGGCCGAATCCATCGGCCTTAAAACCCGGACCCTCCACTACGCCCCGAACAAGCCCCTCCTCCTCCTCACCTGGCCCGGATCCGACCCGACCCTCCCTTCTCTCCTCCTCAACTCCCACCTCGACTCCGTCCCCGCCGAGCCCTCCAAGTGGGCCCACCCGCCCTTCTCGGCCCACCGCACCCCCGACGGCCTCATCTTCGCCCGCGGCGCCCAGGACGACAAGTGCATCGCCGTCCAGTACCTCGAGGCCATCCGCAACCTCAAGGGTTCCAACTTCAACCCCATCCGCACCGTCCACGTGTCCTACGTCCCCGACGAGGAGATCGGCGGCGTGGACGGCGCCGCGAAGTTCGCGGTTTCTGACGAGTTTAAAGAGCTGAAGGTGGGGTTTGTTTTGGACGAGGGTCAGGCCAACCCCGGCGATGAGTTTCGCGTGTTTTATGCTGATCGGACGCCGTGGAATTTGATCGTCAAGGCGGAGGGGATGCCGGGACATGGTTCTAGAATGTTCGATAATAGCGCCATGGAGAATCTGATGGAGAGCGTCGAGGTTATGACCAGGTTTAGGGAGGCTCAGTTCGATGAGGTCAAGGCCGGGAATGCTGCTCATTCCGAGGTCATTTCCGTCAATCCGGTTTATTTGAAAGCCGGGATAGTTTCTGGTGATGGATATGCGATGAATATGCAGCCTTCTGAGGCTGAAGCAGGGTTTAATATAAGAATTCCGCCTACTGTAGACCCGGAGCTTGTTAGGAAGAGAATTGCCGAAGAATGGGCTCCGCAAGCTAGGAACTTGACTTACCAGCTTATTGAGAAAGGGCCCTCCAGAGACTACATGGGTCGCCCTTTAATGACCCCAACCGATGATTCCAATCCATGGTGGTCTGTTTTCAAGCAAGCTGTTGCAGCAGCTGGAGGGAAGCTTGCAAAGCCTGAAATCTTGGCTTCTACCACCGACGCACGGTTCATGAGACAGCAAGGCATTCCTACTCTTGGTTTCTCCCCAATGACAAATACTCCAATCTTACTGCATGACCATAATGAGTTCTTAAAGGATACCATATTCTTGAAAGGCATCAAAGTATATGAATCTGTAATCAGTGCTTTGAGTTCCTTTGAGGGGTGA

Protein Analysis

436

Amino Acids

48.02

Weight (kDa)

5.54

Isoelectric Point (pI)

32.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M28 PF04389 83 - 219 1.7e-08 Peptidase family M28
Peptidase_M20 PF01546 96 - 428 2.1e-31 Peptidase family M20/M25/M40
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 425
AccB1I GGYRCC 2 cut(s) 389, 521
AccB7I CCANNNNNTGG 1 cut(s) 1059
AccI GTMKAC 2 cut(s) 5, 918
AccII CGCG 4 cut(s) 387, 527, 536, 615
AccIII TCCGGA 1 cut(s) 120
AclWI GGATC 3 cut(s) 131, 255, 268
AcsI RAATTY 2 cut(s) 643, 903
AcuI CTGAAG 2 cut(s) 581, 903
AcvI CACGTG 1 cut(s) 481
AcyI GRCGYC 3 cut(s) 390, 522, 635
AfaI GTAC 1 cut(s) 422
AflIII ACRYGT 1 cut(s) 480
AgsI TTSAA 4 cut(s) 460, 826, 1075, 1252
AjnI CCWGG 4 cut(s) 180, 251, 393, 740
AjuI GAANNNNNNNTTGG 2 cut(s) 1033, 1065
AloI GAACNNNNNNTCC 2 cut(s) 743, 775
AluBI AGCT 8 cut(s) 18, 559, 928, 968, 988, 1082, 1094, 1105
AluI AGCT 8 cut(s) 18, 559, 928, 968, 988, 1082, 1094, 1105
Alw26I GTCTC 2 cut(s) 1005, 1147
AlwI GGATC 3 cut(s) 131, 255, 268
AlwNI CAGNNNCTG 1 cut(s) 1094
Ama87I CYCGRG 1 cut(s) 425
Aor13HI TCCGGA 1 cut(s) 120
ApaI GGGCCC 3 cut(s) 61, 337, 1005
ApeKI GCWGC 4 cut(s) 785, 868, 1088, 1091
ApoI RAATTY 2 cut(s) 643, 903
AspLEI GCGC 3 cut(s) 392, 524, 704
AspS9I GGNCC 9 cut(s) 57, 58, 210, 255, 333, 334, 352, 1001, 1002
AsuHPI GGTGA 3 cut(s) 128, 241, 857
AvaI CYCGRG 1 cut(s) 425
AvaII GGWCC 1 cut(s) 210
BaeGI GKGCMC 3 cut(s) 61, 337, 1005
BamHI GGATCC 1 cut(s) 260
BanI GGYRCC 2 cut(s) 389, 521
BanII GRGCYC 5 cut(s) 61, 324, 337, 961, 1005
BbrPI CACGTG 1 cut(s) 481
BbsI GAAGAC 1 cut(s) 22
BbvI GCAGC 4 cut(s) 772, 880, 1100, 1103
BccI CCATC 5 cut(s) 200, 440, 473, 712, 842
BceAI ACGGC 6 cut(s) 146, 147, 385, 398, 535, 622
BcgI CGANNNNNNTGC 2 cut(s) 847, 881
BciT130I CCWGG 4 cut(s) 182, 253, 395, 742
BciVI GTATCC 1 cut(s) 1231
BcoDI GTCTC 2 cut(s) 1005, 1147
BfaI CTAG 2 cut(s) 684, 969
BfmI CTRYAG 1 cut(s) 915
BfoI RGCGCY 3 cut(s) 393, 525, 705
BfuI GTATCC 1 cut(s) 1231
BglI GCCNNNNNGGC 1 cut(s) 56
BisI GCNGC 7 cut(s) 388, 511, 525, 786, 869, 1089, 1092
BlsI GCNGC 7 cut(s) 389, 512, 526, 787, 870, 1090, 1093
Bme18I GGWCC 1 cut(s) 210
BmeT110I CYCGRG 1 cut(s) 425
BmgT120I GGNCC 9 cut(s) 57, 58, 210, 255, 333, 334, 352, 1001, 1002
BmsI GCATC 3 cut(s) 417, 657, 1266
BoxI GACNNNNGTC 1 cut(s) 585
BpiI GAAGAC 1 cut(s) 22
BpmI CTGGAG 2 cut(s) 991, 1116
BpuEI CTTGAG 1 cut(s) 428
BsaAI YACGTR 1 cut(s) 481
BsaBI GATNNNNATC 1 cut(s) 1053
BsaHI GRCGYC 3 cut(s) 390, 522, 635
BsaJI CCNNGG 9 cut(s) 54, 180, 385, 393, 598, 638, 705, 795, 1058
BsaWI WCCGGW 2 cut(s) 120, 814
BsaXI ACNNNNNCTCC 8 cut(s) 140, 170, 290, 320, 743, 773, 1183, 1213
Bse1I ACTGG 1 cut(s) 418
Bse8I GATNNNNATC 1 cut(s) 1053
BseAI TCCGGA 1 cut(s) 120
BseBI CCWGG 4 cut(s) 182, 253, 395, 742
BseDI CCNNGG 9 cut(s) 54, 180, 385, 393, 598, 638, 705, 795, 1058
BseGI GGATG 3 cut(s) 432, 465, 672
BseJI GATNNNNATC 1 cut(s) 1053
BseMII CTCAG 2 cut(s) 770, 867
BseNI ACTGG 1 cut(s) 418
BseRI GAGGAG 6 cut(s) 230, 233, 236, 275, 278, 515
BseSI GKGCMC 3 cut(s) 61, 337, 1005
BseXI GCAGC 4 cut(s) 772, 880, 1100, 1103
BseYI CCCAGC 1 cut(s) 14
Bsh1236I CGCG 4 cut(s) 387, 527, 536, 615
BshNI GGYRCC 2 cut(s) 389, 521
BsiHKCI CYCGRG 1 cut(s) 425
BslFI GGGAC 3 cut(s) 296, 476, 687
BsmAI GTCTC 2 cut(s) 1005, 1147
BsmFI GGGAC 3 cut(s) 296, 476, 687
BsmI GAATGC 2 cut(s) 787, 1164
BsoBI CYCGRG 1 cut(s) 425
Bsp120I GGGCCC 3 cut(s) 57, 333, 1001
Bsp1286I GDGCHC 5 cut(s) 61, 324, 337, 961, 1005
Bsp13I TCCGGA 1 cut(s) 120
Bsp143I GATC 5 cut(s) 123, 260, 504, 628, 648
Bsp19I CCATGG 2 cut(s) 705, 1058
BspCNI CTCAG 2 cut(s) 769, 868
BspEI TCCGGA 1 cut(s) 120
BspFNI CGCG 4 cut(s) 387, 527, 536, 615
BspHI TCATGA 1 cut(s) 1149
BspPI GGATC 3 cut(s) 131, 255, 268
BspT107I GGYRCC 2 cut(s) 389, 521
BsrI ACTGG 1 cut(s) 418
BssECI CCNNGG 9 cut(s) 54, 180, 385, 393, 598, 638, 705, 795, 1058
BssMI GATC 5 cut(s) 123, 260, 504, 628, 648
BssNAI GTATAC 1 cut(s) 6
BssNI GRCGYC 3 cut(s) 390, 522, 635
BssT1I CCWWGG 2 cut(s) 705, 1058
Bst1107I GTATAC 1 cut(s) 6
Bst2UI CCWGG 4 cut(s) 182, 253, 395, 742
Bst4CI ACNGT 3 cut(s) 475, 916, 1146
Bst6I CTCTTC 1 cut(s) 932
BstACI GRCGYC 3 cut(s) 390, 522, 635
BstBAI YACGTR 1 cut(s) 481
BstC8I GCNNGC 4 cut(s) 385, 966, 1080, 1107
BstDEI CTNAG 2 cut(s) 756, 876
BstDSI CCRYGG 4 cut(s) 385, 638, 705, 1058
BstF5I GGATG 3 cut(s) 432, 465, 672
BstFNI CGCG 4 cut(s) 387, 527, 536, 615
BstH2I RGCGCY 3 cut(s) 393, 525, 705
BstHHI GCGC 3 cut(s) 392, 524, 704
BstKTI GATC 5 cut(s) 126, 263, 507, 631, 651
BstMAI GTCTC 2 cut(s) 1005, 1147
BstMBI GATC 5 cut(s) 123, 260, 504, 628, 648
BstMWI GCNNNNNNNGC 8 cut(s) 56, 389, 519, 533, 782, 965, 1088, 1111
BstNI CCWGG 4 cut(s) 182, 253, 395, 742
BstPAI GACNNNNGTC 1 cut(s) 585
BstSFI CTRYAG 1 cut(s) 915
BstSLI GKGCMC 3 cut(s) 61, 337, 1005
BstUI CGCG 4 cut(s) 387, 527, 536, 615
BstV1I GCAGC 4 cut(s) 772, 880, 1100, 1103
BstV2I GAAGAC 1 cut(s) 22
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BstZ17I GTATAC 1 cut(s) 6
BsuI GTATCC 1 cut(s) 1231
BtgI CCRYGG 4 cut(s) 385, 638, 705, 1058
BtgZI GCGATG 4 cut(s) 31, 394, 618, 872
BtsCI GGATG 3 cut(s) 432, 465, 672
BtsIMutI CAGTG 1 cut(s) 1288
Cac8I GCNNGC 4 cut(s) 385, 966, 1080, 1107
CaiI CAGNNNCTG 1 cut(s) 1094
CciI TCATGA 1 cut(s) 1149
CfoI GCGC 3 cut(s) 392, 524, 704
Cfr13I GGNCC 9 cut(s) 57, 58, 210, 255, 333, 334, 352, 1001, 1002
Cfr42I CCGCGG 1 cut(s) 388
CseI GACGC 3 cut(s) 643, 715, 1148
CsiI ACCWGGT 1 cut(s) 740
Csp6I GTAC 1 cut(s) 421
CviAII CATG 6 cut(s) 677, 706, 1018, 1059, 1150, 1214
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 2 cut(s) 756, 876
DinI GGCGCC 2 cut(s) 391, 523
DpnI GATC 5 cut(s) 125, 262, 506, 630, 650
DpnII GATC 5 cut(s) 123, 260, 504, 628, 648
DraI TTTAAA 1 cut(s) 553
Eam1104I CTCTTC 1 cut(s) 932
EarI CTCTTC 1 cut(s) 932
EciI GGCGGA 3 cut(s) 148, 674, 897
Eco130I CCWWGG 2 cut(s) 705, 1058
Eco24I GRGCYC 5 cut(s) 61, 324, 337, 961, 1005
Eco47I GGWCC 1 cut(s) 210
Eco57I CTGAAG 2 cut(s) 581, 903
Eco72I CACGTG 1 cut(s) 481
Eco88I CYCGRG 1 cut(s) 425
EcoO109I RGGNCCY 3 cut(s) 57, 1001, 1002
EcoRI GAATTC 1 cut(s) 903
EcoRII CCWGG 4 cut(s) 180, 251, 393, 740
EcoT14I CCWWGG 2 cut(s) 705, 1058
EcoT38I GRGCYC 5 cut(s) 61, 324, 337, 961, 1005
EgeI GGCGCC 2 cut(s) 391, 523
EheI GGCGCC 2 cut(s) 391, 523
ErhI CCWWGG 2 cut(s) 705, 1058
FaeI CATG 6 cut(s) 680, 709, 1021, 1062, 1153, 1217
FaqI GGGAC 3 cut(s) 296, 476, 687
FatI CATG 6 cut(s) 676, 705, 1017, 1058, 1149, 1213
FauI CCCGC 4 cut(s) 110, 322, 348, 392
FblI GTMKAC 2 cut(s) 5, 918
Fnu4HI GCNGC 7 cut(s) 388, 511, 525, 786, 869, 1089, 1092
FokI GGATG 3 cut(s) 419, 452, 679
FriOI GRGCYC 5 cut(s) 61, 324, 337, 961, 1005
Fsp4HI GCNGC 7 cut(s) 388, 511, 525, 786, 869, 1089, 1092
FspBI CTAG 2 cut(s) 684, 969
GlaI GCGC 3 cut(s) 391, 523, 703
GluI GCNGC 7 cut(s) 388, 511, 525, 786, 869, 1089, 1092
GsaI CCCAGC 1 cut(s) 18
GsuI CTGGAG 2 cut(s) 991, 1116
HaeII RGCGCY 3 cut(s) 393, 525, 705
HgaI GACGC 3 cut(s) 643, 715, 1148
HhaI GCGC 3 cut(s) 392, 524, 704
Hin1I GRCGYC 3 cut(s) 390, 522, 635
Hin1II CATG 6 cut(s) 680, 709, 1021, 1062, 1153, 1217
Hin6I GCGC 3 cut(s) 390, 522, 702
HinP1I GCGC 3 cut(s) 390, 522, 702
HindIII AAGCTT 1 cut(s) 1103
HinfI GANTC 5 cut(s) 188, 305, 712, 1049, 1271
HphI GGTGA 3 cut(s) 128, 241, 857
Hpy166II GTNNAC 4 cut(s) 6, 478, 517, 919
Hpy188I TCNGA 6 cut(s) 265, 544, 633, 717, 796, 877
Hpy188III TCNNGA 6 cut(s) 109, 121, 684, 1008, 1150, 1249
Hpy8I GTNNAC 4 cut(s) 6, 478, 517, 919
Hpy99I CGWCG 4 cut(s) 371, 500, 731, 1142
HpyAV CCTTC 5 cut(s) 178, 288, 355, 556, 882
HpyCH4III ACNGT 3 cut(s) 475, 916, 1146
HpyCH4IV ACGT 2 cut(s) 480, 489
HpyCH4V TGCA 5 cut(s) 408, 868, 1088, 1109, 1213
HpyF10VI GCNNNNNNNGC 8 cut(s) 56, 389, 519, 533, 782, 965, 1088, 1111
HpyF3I CTNAG 2 cut(s) 756, 876
HpySE526I ACGT 2 cut(s) 480, 489
Hsp92I GRCGYC 3 cut(s) 390, 522, 635
Hsp92II CATG 6 cut(s) 680, 709, 1021, 1062, 1153, 1217
HspAI GCGC 3 cut(s) 390, 522, 702
KasI GGCGCC 2 cut(s) 389, 521
Kpn2I TCCGGA 1 cut(s) 120
KspI CCGCGG 1 cut(s) 388
Kzo9I GATC 5 cut(s) 123, 260, 504, 628, 648
LmnI GCTCC 3 cut(s) 67, 925, 964
Lsp1109I GCAGC 4 cut(s) 772, 880, 1100, 1103
LweI GCATC 3 cut(s) 417, 657, 1266
MabI ACCWGGT 1 cut(s) 740
MaeI CTAG 2 cut(s) 684, 969
MaeII ACGT 2 cut(s) 480, 489
MaeIII GTNAC 1 cut(s) 97
MalI GATC 5 cut(s) 125, 262, 506, 630, 650
MboI GATC 5 cut(s) 123, 260, 504, 628, 648
MboII GAAGA 4 cut(s) 22, 370, 949, 962
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 5 cut(s) 61, 324, 337, 961, 1005
MluCI AATT 3 cut(s) 643, 903, 942
Mly113I GGCGCC 2 cut(s) 390, 522
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 2 cut(s) 288, 477
MroI TCCGGA 1 cut(s) 120
MseI TTAA 5 cut(s) 201, 552, 894, 1031, 1232
MspA1I CMGCKG 2 cut(s) 387, 1094
Mva1269I GAATGC 2 cut(s) 787, 1164
MvaI CCWGG 4 cut(s) 182, 253, 395, 742
MvnI CGCG 4 cut(s) 387, 527, 536, 615
MwoI GCNNNNNNNGC 8 cut(s) 56, 389, 519, 533, 782, 965, 1088, 1111
NarI GGCGCC 2 cut(s) 390, 522
NcoI CCATGG 2 cut(s) 705, 1058
NdeII GATC 5 cut(s) 123, 260, 504, 628, 648
NlaIII CATG 6 cut(s) 680, 709, 1021, 1062, 1153, 1217
NmeAIII GCCGAG 2 cut(s) 329, 343
PaeR7I CTCGAG 1 cut(s) 425
PagI TCATGA 1 cut(s) 1149
PcsI WCGNNNNNNNCGW 4 cut(s) 137, 159, 486, 495
PctI GAATGC 2 cut(s) 787, 1164
PfeI GAWTC 4 cut(s) 188, 712, 1049, 1271
PflFI GACNNNGTC 1 cut(s) 308
PflMI CCANNNNNTGG 1 cut(s) 1059
PkrI GCNGC 7 cut(s) 389, 512, 526, 787, 870, 1090, 1093
PleI GAGTC 1 cut(s) 299
PluTI GGCGCC 2 cut(s) 393, 525
PmaCI CACGTG 1 cut(s) 481
PmlI CACGTG 1 cut(s) 481
PpsI GAGTC 1 cut(s) 299
Ppu21I YACGTR 1 cut(s) 481
PshAI GACNNNNGTC 1 cut(s) 585
Psp6I CCWGG 4 cut(s) 180, 251, 393, 740
PspCI CACGTG 1 cut(s) 481
PspFI CCCAGC 1 cut(s) 14
PspGI CCWGG 4 cut(s) 180, 251, 393, 740
PspOMI GGGCCC 3 cut(s) 57, 333, 1001
PspPI GGNCC 9 cut(s) 57, 58, 210, 255, 333, 334, 352, 1001, 1002
PspXI VCTCGAGB 1 cut(s) 425
PsrI GAACNNNNNNTAC 4 cut(s) 134, 166, 965, 997
PstNI CAGNNNCTG 1 cut(s) 1094
PsuI RGATCY 1 cut(s) 260
PsyI GACNNNGTC 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 1094
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
SacII CCGCGG 1 cut(s) 388
SaqAI TTAA 5 cut(s) 201, 552, 894, 1031, 1232
SatI GCNGC 7 cut(s) 388, 511, 525, 786, 869, 1089, 1092
Sau3AI GATC 5 cut(s) 123, 260, 504, 628, 648
Sau96I GGNCC 9 cut(s) 57, 58, 210, 255, 333, 334, 352, 1001, 1002
SchI GAGTC 1 cut(s) 299
SduI GDGCHC 5 cut(s) 61, 324, 337, 961, 1005
SexAI ACCWGGT 1 cut(s) 740
SfaNI GCATC 3 cut(s) 417, 657, 1266
SfcI CTRYAG 1 cut(s) 915
SfoI GGCGCC 2 cut(s) 391, 523
Sfr274I CTCGAG 1 cut(s) 425
Sfr303I CCGCGG 1 cut(s) 388
SgrBI CCGCGG 1 cut(s) 388
SinI GGWCC 1 cut(s) 210
SlaI CTCGAG 1 cut(s) 425
SmlI CTYRAG 2 cut(s) 425, 443
SmoI CTYRAG 2 cut(s) 425, 443
Sse9I AATT 3 cut(s) 643, 903, 942
SspDI GGCGCC 2 cut(s) 389, 521
SspMI CTAG 2 cut(s) 684, 969
StyI CCWWGG 2 cut(s) 705, 1058
TaaI ACNGT 3 cut(s) 475, 916, 1146
TaiI ACGT 2 cut(s) 483, 492
TaqI TCGA 5 cut(s) 303, 426, 693, 729, 762
TasI AATT 3 cut(s) 643, 903, 942
TauI GCSGC 3 cut(s) 390, 513, 527
TfiI GAWTC 4 cut(s) 188, 712, 1049, 1271
Tru1I TTAA 5 cut(s) 201, 552, 894, 1031, 1232
Tru9I TTAA 5 cut(s) 201, 552, 894, 1031, 1232
TscAI CASTG 1 cut(s) 1288
TseI GCWGC 4 cut(s) 785, 868, 1088, 1091
TspDTI ATGAA 3 cut(s) 875, 1138, 1284
TspGWI ACGGA 2 cut(s) 298, 796
TspRI CASTG 1 cut(s) 1288
Tth111I GACNNNGTC 1 cut(s) 308
Van91I CCANNNNNTGG 1 cut(s) 1059
VpaK11BI GGWCC 1 cut(s) 210
XapI RAATTY 2 cut(s) 643, 903
XbaI TCTAGA 1 cut(s) 683
XcmI CCANNNNNNNNNTGG 1 cut(s) 1015
XhoI CTCGAG 1 cut(s) 425
XmiI GTMKAC 2 cut(s) 5, 918
XspI CTAG 2 cut(s) 684, 969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.