Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006711

Physical Location & Seq

Genomic Coordinates Forward (+)

39705963 .. 39707915

Gene Structure 1953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0251400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGGAACCCTTCAAGCCATAGTTCTTCTCTGCTTGGTTTTATTGCATCTGTGCAGCCACATTCTTGCCCAAGATGAAGATTGGAAGACTGCTACTGCAACATACACCAAAGAAACAGATGGATCTATCATTACTGAAGGAGCTTGTGGTTATGGGGACCTTCACAAGATTAGCTATGGGAAATACAGTGCTGGGCTAAGTGGGATTTTGTTCAACAGAGGGAGTACTTGTGGTGCTTGTTATGAGCTGAGATGTGTTGACCACATCTTATGGTGTCTGCAAGGGAGTCCCACTATTATTCTCACTGCTACTGATTTCTGTCCACCGAATTTTGGGCTTTCGGCAGATTATGGTGGCTGGTGCAATTTCCCCAAGGAACACTTTGAGATGTCAGAGGCAGCATTTGCTGAAATTGCAAAGAAAAAGGCTGATATTGTGCCAGTTCAGTATAGGAGGGTGAGGTGTGACAGAATTGGAGGGCTGCGATTCACTATGAGTGGAAGTTCTCACTTCCATGAAGTCTTGATTACCAATGTAGGTTCGGACGGGGAAGTGCTTGCTGTGAAGGTGAAGGGTTCGAGAACCGGGTGGATACCGATGGCTAGAAACTGGGGTCAGAATTGGCAAAGCAATGTCAATCTTCAAGGACAGCCTCTTTCTTTTGAGGTAACAGTCAGTAGCGGAAAAACACTCACATCTTACAATGTTGCTCCACCAAAGTGGCAATTTGGTCAGACATTTGAAGGGAAACAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004046 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0016787 GO:0016810 GO:0016811 GO:0031982 GO:0042802 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0070062 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

252

Amino Acids

27.72

Weight (kDa)

7.02

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	65 - 150	5.2e-17	Lytic transglycolase
Expansin_C	PF01357	162 - 238	4.7e-28	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44180 AT1G44180 AT1G44180 AT1G44820
fragaria_vesca	FvH4_2g26640 FvH4_2g26640 FvH4_2g26640
malus_domestica	MD15G1352300.v1.1
prunus_persica	Prupe.1G500800_v2.0.a1
pyrus_communis	pycom15g31580
rosa_chinensis	RchiOBHm_Chr6g0295491
rosa_laevigata	RLG00000000786 RLG00000011796 RLG00000013633 RLG00000018651 RLG00000028911
rosa_multiflora	Rmu_sc0005712.1_g000028 Rmu_sc0012290.1_g000002 Rmu_sc0012865.1_g000005
rosa_roxburghii	Rroxscaffold_7G00172430
rosa_rugosa	Rorug06G0251400
rosa_samantha	Rh6AG364600 Rh6BG373000 Rh6CG379200 Rh6DG365600
rosa_wichuraiana	Rw6G031840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	681
AclWI	GGATC	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	328
AcuI	CTGAAG	1 cut(s)	156
AfaI	GTAC	1 cut(s)	226
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	4 cut(s)	14, 214, 644, 743
AleI	CACNNNNGTG	1 cut(s)	718
AluBI	AGCT	3 cut(s)	143, 174, 247
AluI	AGCT	3 cut(s)	143, 174, 247
AlwI	GGATC	1 cut(s)	130
ApeKI	GCWGC	3 cut(s)	54, 398, 481
ApoI	RAATTY	1 cut(s)	328
Asp700I	GAANNNNTTC	1 cut(s)	752
AspS9I	GGNCC	1 cut(s)	157
AsuC2I	CCSGG	1 cut(s)	586
AsuHPI	GGTGA	2 cut(s)	469, 580
AvaII	GGWCC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	92
BbvI	GCAGC	3 cut(s)	66, 410, 468
BccI	CCATC	2 cut(s)	113, 592
BciVI	GTATCC	1 cut(s)	585
BcnI	CCSGG	1 cut(s)	586
BfaI	CTAG	2 cut(s)	603, 757
BfuI	GTATCC	1 cut(s)	585
BisI	GCNGC	3 cut(s)	55, 399, 482
BlsI	GCNGC	3 cut(s)	56, 400, 483
BmcAI	AGTACT	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	586
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	2 cut(s)	7, 158
BmrFI	CCNGG	1 cut(s)	586
BmrI	ACTGGG	1 cut(s)	619
BmsI	GCATC	1 cut(s)	55
BmuI	ACTGGG	1 cut(s)	619
BpiI	GAAGAC	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	586
BsaJI	CCNNGG	1 cut(s)	372
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse1I	ACTGG	2 cut(s)	440, 614
Bse3DI	GCAATG	1 cut(s)	637
BseDI	CCNNGG	1 cut(s)	372
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMI	GCAATG	1 cut(s)	637
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	2 cut(s)	440, 614
BseXI	GCAGC	3 cut(s)	66, 410, 468
BseYI	CCCAGC	1 cut(s)	191
BsgI	GTGCAG	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	585
BslFI	GGGAC	2 cut(s)	170, 273
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmFI	GGGAC	2 cut(s)	170, 273
Bsp143I	GATC	1 cut(s)	122
BspACI	CCGC	1 cut(s)	681
BspCNI	CTCAG	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	7, 158
BspPI	GGATC	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	637
BsrI	ACTGG	2 cut(s)	440, 614
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	1 cut(s)	122
BssT1I	CCWWGG	1 cut(s)	372
Bst4CI	ACNGT	3 cut(s)	188, 673, 753
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	2 cut(s)	197, 248
BstKTI	GATC	1 cut(s)	125
BstMBI	GATC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 413
BstSCI	CCNGG	1 cut(s)	584
BstV1I	GCAGC	3 cut(s)	66, 410, 468
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	122
BstXI	CCANNNNNNTGG	1 cut(s)	720
BstYI	RGATCY	1 cut(s)	122
BsuI	GTATCC	1 cut(s)	585
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	2 cut(s)	193, 303
Cac8I	GCNNGC	1 cut(s)	558
Cfr13I	GGNCC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	1 cut(s)	515
CviQI	GTAC	1 cut(s)	225
DdeI	CTNAG	2 cut(s)	197, 248
DpnI	GATC	1 cut(s)	124
DpnII	GATC	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	156
EcoO109I	RGGNCCY	1 cut(s)	157
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	1 cut(s)	518
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FaqI	GGGAC	2 cut(s)	170, 273
FatI	CATG	1 cut(s)	514
Fnu4HI	GCNGC	3 cut(s)	55, 399, 482
Fsp4HI	GCNGC	3 cut(s)	55, 399, 482
FspBI	CTAG	2 cut(s)	603, 757
GluI	GCNGC	3 cut(s)	55, 399, 482
GsaI	CCCAGC	1 cut(s)	195
HapII	CCGG	1 cut(s)	585
Hin1II	CATG	1 cut(s)	518
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	2 cut(s)	286, 486
HpaII	CCGG	1 cut(s)	585
HphI	GGTGA	2 cut(s)	469, 580
Hpy166II	GTNNAC	2 cut(s)	259, 323
Hpy188I	TCNGA	4 cut(s)	394, 544, 618, 735
Hpy188III	TCNNGA	2 cut(s)	523, 579
Hpy8I	GTNNAC	2 cut(s)	259, 323
HpyAV	CCTTC	6 cut(s)	20, 131, 170, 559, 565, 737
HpyCH4III	ACNGT	3 cut(s)	188, 673, 753
HpyCH4V	TGCA	6 cut(s)	46, 54, 98, 280, 363, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 413
HpyF3I	CTNAG	2 cut(s)	197, 248
Hsp92II	CATG	1 cut(s)	518
Kzo9I	GATC	1 cut(s)	122
LmnI	GCTCC	2 cut(s)	140, 715
LpnPI	CCDG	5 cut(s)	177, 343, 453, 595, 598
Lsp1109I	GCAGC	3 cut(s)	66, 410, 468
LweI	GCATC	1 cut(s)	55
MaeI	CTAG	2 cut(s)	603, 757
MaeIII	GTNAC	2 cut(s)	464, 667
MalI	GATC	1 cut(s)	124
MboI	GATC	1 cut(s)	122
MboII	GAAGA	4 cut(s)	17, 89, 97, 632
MflI	RGATCY	1 cut(s)	122
MluCI	AATT	6 cut(s)	328, 364, 411, 471, 619, 725
MlyI	GAGTC	1 cut(s)	295
MnlI	CCTC	7 cut(s)	212, 388, 447, 453, 470, 658, 663
MroXI	GAANNNNTTC	1 cut(s)	752
MslI	CAYNNNNRTG	2 cut(s)	513, 718
MspI	CCGG	1 cut(s)	585
MspR9I	CCNGG	1 cut(s)	586
MwoI	GCNNNNNNNGC	2 cut(s)	404, 413
NciI	CCSGG	1 cut(s)	586
NdeII	GATC	1 cut(s)	122
NlaIII	CATG	1 cut(s)	518
NlaIV	GGNNCC	2 cut(s)	7, 158
NmuCI	GTSAC	1 cut(s)	464
OliI	CACNNNNGTG	1 cut(s)	718
PdmI	GAANNNNTTC	1 cut(s)	752
PfeI	GAWTC	1 cut(s)	486
PkrI	GCNGC	3 cut(s)	56, 400, 483
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
PpuMI	RGGWCCY	1 cut(s)	157
Psp5II	RGGWCCY	1 cut(s)	157
PspFI	CCCAGC	1 cut(s)	191
PspN4I	GGNNCC	2 cut(s)	7, 158
PspPI	GGNCC	1 cut(s)	157
PspPPI	RGGWCCY	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	122
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
RseI	CAYNNNNRTG	2 cut(s)	513, 718
SatI	GCNGC	3 cut(s)	55, 399, 482
Sau3AI	GATC	1 cut(s)	122
Sau96I	GGNCC	1 cut(s)	157
ScaI	AGTACT	1 cut(s)	226
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	1 cut(s)	586
SetI	ASST	8 cut(s)	145, 162, 176, 249, 464, 541, 570, 669
SfaNI	GCATC	1 cut(s)	55
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	2 cut(s)	513, 718
Sse9I	AATT	6 cut(s)	328, 364, 411, 471, 619, 725
SsiI	CCGC	1 cut(s)	681
SspMI	CTAG	2 cut(s)	603, 757
StyD4I	CCNGG	1 cut(s)	584
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	3 cut(s)	188, 673, 753
TaqI	TCGA	1 cut(s)	578
TasI	AATT	6 cut(s)	328, 364, 411, 471, 619, 725
TatI	WGTACW	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	486
TscAI	CASTG	2 cut(s)	193, 310
TseFI	GTSAC	1 cut(s)	464
TseI	GCWGC	3 cut(s)	54, 398, 481
Tsp45I	GTSAC	1 cut(s)	464
TspDTI	ATGAA	2 cut(s)	90, 531
TspRI	CASTG	2 cut(s)	193, 310
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	1 cut(s)	328
XmnI	GAANNNNTTC	1 cut(s)	752
XspI	CTAG	2 cut(s)	603, 757
ZrmI	AGTACT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.