Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006711

Physical Location & Seq

Genomic Coordinates Forward (+)

5454754 .. 5456221

Gene Structure 1468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000786

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCAAGAAGAAGAACCATTAATGGTGACCATTGATTCTGGTGTCTTTGGATATGAACAAGACACTTATCTTAACAAAGATGACATCATTGAATTTTGTTCGATGGAACCACTCTCTACTGTTTGCATGACAATTTACATGAGACAACTATGGTCATCACTAAAGAAAGATCATAAGGATAAGTTGTATGGATTTGAGGTTTCATCTTCCTTCTCTCATGATTCAGGAAAACGAGATGAAAGATCGTTTGCATTGTTATTCAAGGAACTGAAGATCGGGTTTGTTTTGGACAAGGATCAGGCCAGCCCCGGTGATGAGATTCGAGTCTTTTACGCCTATCGGACGCCGTGGAATTTGATCGTCAAGGCGGAGGGGATGCCTAGCCATGGTTCTAGAATGTTCGACAATAGTGCCATGGAGAATCTGACGAAGAGCATTGAGCTTATGGCGAGGTTCAGGGAGGCTCAGTTCGATGAGGTCAAGGCTGGGAATGCTGCTAATTCAGAGGTTATTTCGGTCAATCCGGTTTATTTCAAATCCGGGATTGTTTCCGGTGATGTGAGAGTCATGTGGTTTTGTCAGCTTAGTGGTTATTGTTGTGTTTCGTGTTTGAAATTTTTTTATCACAAAGACAAAGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004046 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0016787 GO:0016810 GO:0016811 GO:0031982 GO:0042802 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0070062 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

215

Amino Acids

24.52

Weight (kDa)

5.31

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44180 AT1G44180 AT1G44180 AT1G44820
fragaria_vesca	FvH4_2g26640 FvH4_2g26640 FvH4_2g26640
malus_domestica	MD15G1352300.v1.1
prunus_persica	Prupe.1G500800_v2.0.a1
pyrus_communis	pycom15g31580
rosa_chinensis	RchiOBHm_Chr6g0295491
rosa_laevigata	RLG00000000786 RLG00000011796 RLG00000013633 RLG00000018651 RLG00000028911
rosa_multiflora	Rmu_sc0005712.1_g000028 Rmu_sc0012290.1_g000002 Rmu_sc0012865.1_g000005
rosa_roxburghii	Rroxscaffold_7G00172430
rosa_rugosa	Rorug06G0251400
rosa_samantha	Rh6AG364600 Rh6BG373000 Rh6CG379200 Rh6DG365600
rosa_wichuraiana	Rw6G031840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	368
AclWI	GGATC	1 cut(s)	303
AcsI	RAATTY	3 cut(s)	92, 352, 614
AcuI	CTGAAG	1 cut(s)	290
AcyI	GRCGYC	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	386
AgsI	TTSAA	4 cut(s)	92, 262, 535, 613
AloI	GAACNNNNNNTCC	2 cut(s)	452, 484
AluBI	AGCT	2 cut(s)	442, 583
AluI	AGCT	2 cut(s)	442, 583
Alw26I	GTCTC	1 cut(s)	136
AlwI	GGATC	1 cut(s)	303
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	1 cut(s)	494
ApoI	RAATTY	3 cut(s)	92, 352, 614
AseI	ATTAAT	1 cut(s)	20
AsuC2I	CCSGG	2 cut(s)	309, 541
AsuHPI	GGTGA	3 cut(s)	37, 323, 566
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	1 cut(s)	97
BceAI	ACGGC	1 cut(s)	331
BcgI	CGANNNNNNTGC	2 cut(s)	392, 426
BcnI	CCSGG	2 cut(s)	309, 541
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	2 cut(s)	381, 393
BisI	GCNGC	1 cut(s)	495
BlsI	GCNGC	1 cut(s)	496
Bme1390I	CCNGG	2 cut(s)	309, 541
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	2 cut(s)	309, 541
BmsI	GCATC	1 cut(s)	366
BpuMI	CCSGG	2 cut(s)	309, 541
BsaHI	GRCGYC	1 cut(s)	344
BsaJI	CCNNGG	4 cut(s)	307, 347, 385, 414
BsaWI	WCCGGW	2 cut(s)	523, 551
BsaXI	ACNNNNNCTCC	2 cut(s)	452, 482
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
BseDI	CCNNGG	4 cut(s)	307, 347, 385, 414
BseGI	GGATG	1 cut(s)	381
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseMII	CTCAG	1 cut(s)	479
BseXI	GCAGC	1 cut(s)	481
BseYI	CCCAGC	1 cut(s)	485
BshFI	GGCC	1 cut(s)	302
BsiSI	CCGG	4 cut(s)	309, 524, 540, 552
BslI	CCNNNNNNNGG	1 cut(s)	386
BsmAI	GTCTC	1 cut(s)	136
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	1 cut(s)	302
Bsp143I	GATC	5 cut(s)	169, 242, 273, 295, 357
Bsp19I	CCATGG	2 cut(s)	385, 414
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	1 cut(s)	478
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	303
BspQI	GCTCTTC	1 cut(s)	425
BssECI	CCNNGG	4 cut(s)	307, 347, 385, 414
BssMI	GATC	5 cut(s)	169, 242, 273, 295, 357
BssNI	GRCGYC	1 cut(s)	344
BssT1I	CCWWGG	2 cut(s)	385, 414
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	1 cut(s)	425
BstACI	GRCGYC	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	2 cut(s)	465, 584
BstDSI	CCRYGG	3 cut(s)	347, 385, 414
BstEII	GGTNACC	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	381
BstKTI	GATC	5 cut(s)	172, 245, 276, 298, 360
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	5 cut(s)	169, 242, 273, 295, 357
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstPI	GGTNACC	1 cut(s)	25
BstSCI	CCNGG	2 cut(s)	307, 539
BstV1I	GCAGC	1 cut(s)	481
BsuRI	GGCC	1 cut(s)	302
BtgI	CCRYGG	3 cut(s)	347, 385, 414
BtsCI	GGATG	1 cut(s)	381
Cac8I	GCNNGC	1 cut(s)	304
CciI	TCATGA	1 cut(s)	217
CseI	GACGC	1 cut(s)	352
CviAII	CATG	6 cut(s)	127, 139, 218, 386, 415, 568
CviJI	RGCY	7 cut(s)	302, 306, 384, 442, 464, 485, 583
CviKI_1	RGCY	7 cut(s)	302, 306, 384, 442, 464, 485, 583
DdeI	CTNAG	2 cut(s)	465, 584
DpnI	GATC	5 cut(s)	171, 244, 275, 297, 359
DpnII	GATC	5 cut(s)	169, 242, 273, 295, 357
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
EciI	GGCGGA	1 cut(s)	383
Eco130I	CCWWGG	2 cut(s)	385, 414
Eco57I	CTGAAG	1 cut(s)	290
Eco91I	GGTNACC	1 cut(s)	25
EcoO65I	GGTNACC	1 cut(s)	25
EcoT14I	CCWWGG	2 cut(s)	385, 414
ErhI	CCWWGG	2 cut(s)	385, 414
FaeI	CATG	6 cut(s)	130, 142, 221, 389, 418, 571
FatI	CATG	6 cut(s)	126, 138, 217, 385, 414, 567
Fnu4HI	GCNGC	1 cut(s)	495
FokI	GGATG	1 cut(s)	388
Fsp4HI	GCNGC	1 cut(s)	495
FspBI	CTAG	2 cut(s)	381, 393
GluI	GCNGC	1 cut(s)	495
GsaI	CCCAGC	1 cut(s)	489
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	4 cut(s)	309, 524, 540, 552
HgaI	GACGC	1 cut(s)	352
Hin1I	GRCGYC	1 cut(s)	344
Hin1II	CATG	6 cut(s)	130, 142, 221, 389, 418, 571
HinfI	GANTC	6 cut(s)	35, 221, 319, 324, 421, 564
HpaII	CCGG	4 cut(s)	309, 524, 540, 552
HphI	GGTGA	3 cut(s)	37, 323, 566
Hpy188I	TCNGA	3 cut(s)	342, 426, 505
Hpy188III	TCNNGA	3 cut(s)	218, 225, 393
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	3 cut(s)	4, 126, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
HpyF3I	CTNAG	2 cut(s)	465, 584
Hsp92I	GRCGYC	1 cut(s)	344
Hsp92II	CATG	6 cut(s)	130, 142, 221, 389, 418, 571
Kzo9I	GATC	5 cut(s)	169, 242, 273, 295, 357
LguI	GCTCTTC	1 cut(s)	425
Lsp1109I	GCAGC	1 cut(s)	481
LweI	GCATC	1 cut(s)	366
MaeI	CTAG	2 cut(s)	381, 393
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	5 cut(s)	171, 244, 275, 297, 359
MboI	GATC	5 cut(s)	169, 242, 273, 295, 357
MboII	GAAGA	5 cut(s)	20, 23, 198, 283, 442
MluCI	AATT	5 cut(s)	92, 132, 352, 499, 614
MlyI	GAGTC	2 cut(s)	333, 573
MnlI	CCTC	6 cut(s)	190, 364, 444, 454, 469, 499
MseI	TTAA	2 cut(s)	20, 72
MspI	CCGG	4 cut(s)	309, 524, 540, 552
MspR9I	CCNGG	2 cut(s)	309, 541
Mva1269I	GAATGC	1 cut(s)	496
MwoI	GCNNNNNNNGC	1 cut(s)	491
NciI	CCSGG	2 cut(s)	309, 541
NcoI	CCATGG	2 cut(s)	385, 414
NdeII	GATC	5 cut(s)	169, 242, 273, 295, 357
NlaIII	CATG	6 cut(s)	130, 142, 221, 389, 418, 571
NlaIV	GGNNCC	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	25
PagI	TCATGA	1 cut(s)	217
PciSI	GCTCTTC	1 cut(s)	425
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	4 cut(s)	35, 221, 319, 421
PfoI	TCCNGGA	1 cut(s)	539
PkrI	GCNGC	1 cut(s)	496
PleI	GAGTC	2 cut(s)	332, 572
PpsI	GAGTC	2 cut(s)	332, 572
PshBI	ATTAAT	1 cut(s)	20
PspEI	GGTNACC	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	485
PspN4I	GGNNCC	1 cut(s)	108
SapI	GCTCTTC	1 cut(s)	425
SaqAI	TTAA	2 cut(s)	20, 72
SatI	GCNGC	1 cut(s)	495
Sau3AI	GATC	5 cut(s)	169, 242, 273, 295, 357
SchI	GAGTC	2 cut(s)	333, 573
ScrFI	CCNGG	2 cut(s)	309, 541
SetI	ASST	7 cut(s)	201, 444, 455, 480, 510, 585, 640
SfaNI	GCATC	1 cut(s)	366
Sse9I	AATT	5 cut(s)	92, 132, 352, 499, 614
SsiI	CCGC	1 cut(s)	368
SspMI	CTAG	2 cut(s)	381, 393
StyD4I	CCNGG	2 cut(s)	307, 539
StyI	CCWWGG	2 cut(s)	385, 414
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	4 cut(s)	101, 322, 402, 471
TaqII	GACCGA	1 cut(s)	505
TasI	AATT	5 cut(s)	92, 132, 352, 499, 614
TfiI	GAWTC	4 cut(s)	35, 221, 319, 421
Tru1I	TTAA	2 cut(s)	20, 72
Tru9I	TTAA	2 cut(s)	20, 72
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	1 cut(s)	494
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	3 cut(s)	69, 192, 252
VspI	ATTAAT	1 cut(s)	20
XapI	RAATTY	3 cut(s)	92, 352, 614
XbaI	TCTAGA	1 cut(s)	392
XspI	CTAG	2 cut(s)	381, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.