Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006711

Physical Location & Seq

Genomic Coordinates Forward (+)

41454467 .. 41457645

Gene Structure 3179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G500800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGTCCAACCATCTCCTCACACTCGCAATCGTCCTCCTACTCGCCGCCACCGGAGGGGCCCACTCAGAACAACAACACCAACACGACACGCCCATCAGTCGTTTCCAAAACTACCTCCGGATCAACACGGCCCACCCGAACCCGAACTACACCGCCCCGGTCTCCTTCCTCACCGCCATAGCCCAAACCCTAAACCTCCAAATCCAAACCCTCCACTTCACGCCTTCTAAATCCAAGCCCCTCCTCCTCCTCACCTGGCCTGGCTCCCGCCCCTCCCTCCCCTCCCTCCTCCTCAACTCCCACCTCGACTCCGTCCCCGCCGAGCCACACAAGTGGGCCCACCCCCCCTTCTCCGCCCACCGCACCGCAGACGGCCGCATATTCGCCCGTGGGGCCCAGGACGACAAGTGCATCGCCATCCAGTACCTCGAGGCCATCCGAAACCTGAAAGCCGCCGACTTTGTCCCAATCCGCACCGTCCACCTGTCCTTCGTCCCCGATGAGGAGATCGGCGGCCTGGACGGAGTCGCCAAGTTCGCGGCTTCCAAGGAGTTTCGGGATTTGAACGTCGGGTTTATGCTGGACGAAGGCCAGGCTAACCCTGGCGACGAGTTTAGGGTTTTCTACGCCGATCGGACTCCGTGGAGTTTGATCGTCAAGGCGAAGGGCGCTCCCGGGCACGGGTCCAGATTGTACGACAATGGAGCGATGGAGAATTTGATGAATAGCGTTGAGGTTATGACTCGATTTCGGGCGGCCCAGTTCGATGTGGTCAAAGCCGGGAAGGCCGCCATTTCGGAGGTTATTTCGGTCAATCCGGTTTATTTGAAATCTGGGATTGCTTCTGGCGATGGGTTTGCGATGAATATGCAGCCTTCGGAGGCCGAGGCCGGGTTTAATATAAGAATACCGCCTACTGTGGACCCCGAGCTTGTTAGGAAGAGGATTGCTGAGGAGTGGGCACCGGAGGCGAGGAATTTGACATACCAGCTAATTGAGAAAGGACCGAATAGCGACTATAGGGGTCGCCCTTTAGCAACACCAACCGATGATTCCAATCCATGGTGGTCTGTTTTCAAACAAGCTATAGCATCGGCTGGAGGCAAACTTGCAAAGCCTGAAATCTTGGCATCAACTACTGATGCACGATACATGAGACAGCAGGGCATTCCTGCTCTTGGTTTCTCCCCAATGACGAATACTCCCGTCTTACTTCATGACCATAACGAGTTCCTAAAGGATACCGTATTCTTGAAGGGCATAAAAGTATATGAATCCGTAATCAGTGCTTTGAGTTCCGTAGTGGAAACATCTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004046 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0016787 GO:0016810 GO:0016811 GO:0031982 GO:0042802 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0070062 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

440

Amino Acids

48.2

Weight (kDa)

6.54

Isoelectric Point (pI)

28.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44180 AT1G44180 AT1G44180 AT1G44820
fragaria_vesca	FvH4_2g26640 FvH4_2g26640 FvH4_2g26640
malus_domestica	MD15G1352300.v1.1
prunus_persica	Prupe.1G500800_v2.0.a1
pyrus_communis	pycom15g31580
rosa_chinensis	RchiOBHm_Chr6g0295491
rosa_laevigata	RLG00000000786 RLG00000011796 RLG00000013633 RLG00000018651 RLG00000028911
rosa_multiflora	Rmu_sc0005712.1_g000028 Rmu_sc0012290.1_g000002 Rmu_sc0012865.1_g000005
rosa_roxburghii	Rroxscaffold_7G00172430
rosa_rugosa	Rorug06G0251400
rosa_samantha	Rh6AG364600 Rh6BG373000 Rh6CG379200 Rh6DG365600
rosa_wichuraiana	Rw6G031840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	428
AccB1I	GGYRCC	1 cut(s)	961
AccB7I	CCANNNNNTGG	1 cut(s)	1062
AccII	CGCG	1 cut(s)	539
AccIII	TCCGGA	1 cut(s)	117
AclWI	GGATC	1 cut(s)	128
AcoI	YGGCCR	1 cut(s)	373
AcsI	RAATTY	2 cut(s)	715, 976
AfaI	GTAC	2 cut(s)	425, 695
AfiI	CCNNNNNNNGG	7 cut(s)	54, 502, 680, 681, 891, 1062, 1178
AgsI	TTSAA	4 cut(s)	565, 829, 1078, 1255
AjnI	CCWGG	6 cut(s)	254, 259, 396, 516, 591, 601
AjuI	GAANNNNNNNTTGG	2 cut(s)	1036, 1068
AleI	CACNNNNGTG	1 cut(s)	331
AluBI	AGCT	3 cut(s)	931, 991, 1085
AluI	AGCT	3 cut(s)	931, 991, 1085
Alw26I	GTCTC	2 cut(s)	166, 1150
AlwI	GGATC	1 cut(s)	128
Ama87I	CYCGRG	3 cut(s)	428, 674, 926
Aor13HI	TCCGGA	1 cut(s)	117
ApaI	GGGCCC	3 cut(s)	61, 340, 397
ApeKI	GCWGC	1 cut(s)	871
ApoI	RAATTY	2 cut(s)	715, 976
AspLEI	GCGC	1 cut(s)	671
AsuC2I	CCSGG	5 cut(s)	158, 675, 676, 781, 892
AsuHPI	GGTGA	2 cut(s)	163, 244
AvaI	CYCGRG	3 cut(s)	428, 674, 926
AvaII	GGWCC	3 cut(s)	684, 922, 1004
BaeGI	GKGCMC	5 cut(s)	61, 340, 397, 681, 964
BanI	GGYRCC	1 cut(s)	961
BanII	GRGCYC	3 cut(s)	61, 340, 397
BbvCI	CCTCAGC	1 cut(s)	951
BbvI	GCAGC	1 cut(s)	883
BccI	CCATC	6 cut(s)	18, 101, 425, 443, 703, 845
BceAI	ACGGC	2 cut(s)	144, 388
BcgI	CGANNNNNNTGC	4 cut(s)	839, 850, 873, 884
BciT130I	CCWGG	6 cut(s)	256, 261, 398, 518, 593, 603
BciVI	GTATCC	1 cut(s)	1234
BcnI	CCSGG	5 cut(s)	158, 675, 676, 781, 892
BcoDI	GTCTC	2 cut(s)	166, 1150
BfmI	CTRYAG	2 cut(s)	1018, 1086
BfoI	RGCGCY	1 cut(s)	672
BfuI	GTATCC	1 cut(s)	1234
BglI	GCCNNNNNGGC	2 cut(s)	392, 785
BisI	GCNGC	8 cut(s)	45, 376, 453, 514, 540, 756, 789, 872
BlsI	GCNGC	8 cut(s)	46, 377, 454, 515, 541, 757, 790, 873
Bme18I	GGWCC	3 cut(s)	684, 922, 1004
BmeT110I	CYCGRG	3 cut(s)	428, 674, 926
BmiI	GGNNCC	9 cut(s)	58, 59, 265, 338, 394, 395, 685, 924, 963
BmrI	ACTGGG	1 cut(s)	754
BmsI	GCATC	4 cut(s)	420, 1100, 1132, 1139
BmuI	ACTGGG	1 cut(s)	754
BpmI	CTGGAG	1 cut(s)	1119
Bpu10I	CCTNAGC	1 cut(s)	951
BpuMI	CCSGG	5 cut(s)	158, 675, 676, 781, 892
BsaBI	GATNNNNATC	1 cut(s)	1056
BsaI	GGTCTC	1 cut(s)	166
BsaJI	CCNNGG	9 cut(s)	156, 388, 396, 546, 601, 641, 674, 885, 1061
BsaWI	WCCGGW	4 cut(s)	50, 117, 817, 964
BsaXI	ACNNNNNCTCC	4 cut(s)	293, 323, 1186, 1216
Bsc4I	CCNNNNNNNGG	7 cut(s)	54, 502, 680, 681, 891, 1062, 1178
Bse1I	ACTGG	2 cut(s)	421, 760
Bse8I	GATNNNNATC	1 cut(s)	1056
BseAI	TCCGGA	1 cut(s)	117
BseBI	CCWGG	6 cut(s)	256, 261, 398, 518, 593, 603
BseDI	CCNNGG	9 cut(s)	156, 388, 396, 546, 601, 641, 674, 885, 1061
BseGI	GGATG	2 cut(s)	417, 435
BseJI	GATNNNNATC	1 cut(s)	1056
BseLI	CCNNNNNNNGG	7 cut(s)	54, 502, 680, 681, 891, 1062, 1178
BseMII	CTCAG	2 cut(s)	78, 942
BseNI	ACTGG	2 cut(s)	421, 760
BseRI	GAGGAG	8 cut(s)	5, 233, 236, 239, 278, 281, 518, 968
BseSI	GKGCMC	5 cut(s)	61, 340, 397, 681, 964
BseX3I	CGGCCG	1 cut(s)	373
BseXI	GCAGC	1 cut(s)	883
Bsh1236I	CGCG	1 cut(s)	539
Bsh1285I	CGRYCG	2 cut(s)	376, 634
BshNI	GGYRCC	1 cut(s)	961
BsiEI	CGRYCG	2 cut(s)	376, 634
BsiHKCI	CYCGRG	3 cut(s)	428, 674, 926
BsiSI	CCGG	8 cut(s)	51, 118, 158, 675, 780, 818, 891, 965
BslFI	GGGAC	3 cut(s)	299, 449, 479
BslI	CCNNNNNNNGG	7 cut(s)	54, 502, 680, 681, 891, 1062, 1178
BsmAI	GTCTC	2 cut(s)	166, 1150
BsmFI	GGGAC	3 cut(s)	299, 449, 479
BsmI	GAATGC	1 cut(s)	1167
Bso31I	GGTCTC	1 cut(s)	166
BsoBI	CYCGRG	3 cut(s)	428, 674, 926
Bsp120I	GGGCCC	3 cut(s)	57, 336, 393
Bsp1286I	GDGCHC	5 cut(s)	61, 340, 397, 681, 964
Bsp13I	TCCGGA	1 cut(s)	117
Bsp143I	GATC	4 cut(s)	120, 507, 631, 651
Bsp19I	CCATGG	1 cut(s)	1061
BspCNI	CTCAG	2 cut(s)	77, 943
BspEI	TCCGGA	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	539
BspHI	TCATGA	1 cut(s)	1216
BspLI	GGNNCC	9 cut(s)	58, 59, 265, 338, 394, 395, 685, 924, 963
BspPI	GGATC	1 cut(s)	128
BspT107I	GGYRCC	1 cut(s)	961
BspTNI	GGTCTC	1 cut(s)	166
BsrI	ACTGG	2 cut(s)	421, 760
BssECI	CCNNGG	9 cut(s)	156, 388, 396, 546, 601, 641, 674, 885, 1061
BssMI	GATC	4 cut(s)	120, 507, 631, 651
BssT1I	CCWWGG	2 cut(s)	546, 1061
Bst2UI	CCWGG	6 cut(s)	256, 261, 398, 518, 593, 603
Bst4CI	ACNGT	3 cut(s)	478, 919, 1246
Bst6I	CTCTTC	1 cut(s)	935
BstDEI	CTNAG	2 cut(s)	64, 951
BstDSI	CCRYGG	3 cut(s)	388, 641, 1061
BstF5I	GGATG	2 cut(s)	417, 435
BstFNI	CGCG	1 cut(s)	539
BstH2I	RGCGCY	1 cut(s)	672
BstHHI	GCGC	1 cut(s)	671
BstKTI	GATC	4 cut(s)	123, 510, 634, 654
BstMAI	GTCTC	2 cut(s)	166, 1150
BstMBI	GATC	4 cut(s)	120, 507, 631, 651
BstMCI	CGRYCG	2 cut(s)	376, 634
BstMWI	GCNNNNNNNGC	5 cut(s)	392, 536, 668, 785, 968
BstNI	CCWGG	6 cut(s)	256, 261, 398, 518, 593, 603
BstSFI	CTRYAG	2 cut(s)	1018, 1086
BstSLI	GKGCMC	5 cut(s)	61, 340, 397, 681, 964
BstUI	CGCG	1 cut(s)	539
BstV1I	GCAGC	1 cut(s)	883
BstXI	CCANNNNNNTGG	1 cut(s)	333
BstZI	CGGCCG	1 cut(s)	373
BsuI	GTATCC	1 cut(s)	1234
BtgI	CCRYGG	3 cut(s)	388, 641, 1061
BtgZI	GCGATG	4 cut(s)	397, 722, 864, 875
BtsCI	GGATG	2 cut(s)	417, 435
BtsIMutI	CAGTG	1 cut(s)	1291
CciI	TCATGA	1 cut(s)	1216
CfoI	GCGC	1 cut(s)	671
Cfr9I	CCCGGG	1 cut(s)	674
Csp6I	GTAC	2 cut(s)	424, 694
CviAII	CATG	3 cut(s)	1062, 1153, 1217
CviQI	GTAC	2 cut(s)	424, 694
DdeI	CTNAG	2 cut(s)	64, 951
DpnI	GATC	4 cut(s)	122, 509, 633, 653
DpnII	GATC	4 cut(s)	120, 507, 631, 651
EaeI	YGGCCR	1 cut(s)	373
EagI	CGGCCG	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	935
EarI	CTCTTC	1 cut(s)	935
EciI	GGCGGA	1 cut(s)	343
EclXI	CGGCCG	1 cut(s)	373
Eco130I	CCWWGG	2 cut(s)	546, 1061
Eco24I	GRGCYC	3 cut(s)	61, 340, 397
Eco31I	GGTCTC	1 cut(s)	166
Eco47I	GGWCC	3 cut(s)	684, 922, 1004
Eco52I	CGGCCG	1 cut(s)	373
Eco88I	CYCGRG	3 cut(s)	428, 674, 926
EcoO109I	RGGNCCY	2 cut(s)	57, 393
EcoRII	CCWGG	6 cut(s)	254, 259, 396, 516, 591, 601
EcoT14I	CCWWGG	2 cut(s)	546, 1061
EcoT38I	GRGCYC	3 cut(s)	61, 340, 397
ErhI	CCWWGG	2 cut(s)	546, 1061
FaeI	CATG	3 cut(s)	1065, 1156, 1220
FaqI	GGGAC	3 cut(s)	299, 449, 479
FatI	CATG	3 cut(s)	1061, 1152, 1216
FauI	CCCGC	2 cut(s)	275, 325
Fnu4HI	GCNGC	8 cut(s)	45, 376, 453, 514, 540, 756, 789, 872
FokI	GGATG	2 cut(s)	404, 422
FriOI	GRGCYC	3 cut(s)	61, 340, 397
Fsp4HI	GCNGC	8 cut(s)	45, 376, 453, 514, 540, 756, 789, 872
GlaI	GCGC	1 cut(s)	670
GluI	GCNGC	8 cut(s)	45, 376, 453, 514, 540, 756, 789, 872
GsuI	CTGGAG	1 cut(s)	1119
HaeII	RGCGCY	1 cut(s)	672
HapII	CCGG	8 cut(s)	51, 118, 158, 675, 780, 818, 891, 965
HhaI	GCGC	1 cut(s)	671
Hin1II	CATG	3 cut(s)	1065, 1156, 1220
Hin6I	GCGC	1 cut(s)	669
HinP1I	GCGC	1 cut(s)	669
HinfI	GANTC	6 cut(s)	308, 525, 637, 742, 1052, 1274
HpaII	CCGG	8 cut(s)	51, 118, 158, 675, 780, 818, 891, 965
HphI	GGTGA	2 cut(s)	163, 244
Hpy166II	GTNNAC	2 cut(s)	481, 922
Hpy188I	TCNGA	6 cut(s)	67, 440, 636, 799, 880, 1315
Hpy188III	TCNNGA	5 cut(s)	118, 557, 687, 1217, 1252
Hpy8I	GTNNAC	2 cut(s)	481, 922
Hpy99I	CGWCG	2 cut(s)	572, 611
HpyAV	CCTTC	9 cut(s)	175, 234, 358, 499, 581, 658, 778, 885, 1249
HpyCH4III	ACNGT	3 cut(s)	478, 919, 1246
HpyCH4IV	ACGT	1 cut(s)	567
HpyCH4V	TGCA	4 cut(s)	411, 871, 1112, 1145
HpyF10VI	GCNNNNNNNGC	5 cut(s)	392, 536, 668, 785, 968
HpyF3I	CTNAG	2 cut(s)	64, 951
HpySE526I	ACGT	1 cut(s)	567
Hsp92II	CATG	3 cut(s)	1065, 1156, 1220
HspAI	GCGC	1 cut(s)	669
Kpn2I	TCCGGA	1 cut(s)	117
Kzo9I	GATC	4 cut(s)	120, 507, 631, 651
LmnI	GCTCC	3 cut(s)	269, 676, 704
Lsp1109I	GCAGC	1 cut(s)	883
LweI	GCATC	4 cut(s)	420, 1100, 1132, 1139
MaeII	ACGT	1 cut(s)	567
MalI	GATC	4 cut(s)	122, 509, 633, 653
MboI	GATC	4 cut(s)	120, 507, 631, 651
MboII	GAAGA	1 cut(s)	952
MhlI	GDGCHC	5 cut(s)	61, 340, 397, 681, 964
MluCI	AATT	3 cut(s)	715, 976, 993
MlyI	GAGTC	4 cut(s)	302, 534, 631, 736
MmeI	TCCRAC	1 cut(s)	30
MroI	TCCGGA	1 cut(s)	117
MseI	TTAA	1 cut(s)	897
MslI	CAYNNNNRTG	1 cut(s)	331
MspI	CCGG	8 cut(s)	51, 118, 158, 675, 780, 818, 891, 965
Mva1269I	GAATGC	1 cut(s)	1167
MvaI	CCWGG	6 cut(s)	256, 261, 398, 518, 593, 603
MvnI	CGCG	1 cut(s)	539
MwoI	GCNNNNNNNGC	5 cut(s)	392, 536, 668, 785, 968
NciI	CCSGG	5 cut(s)	158, 675, 676, 781, 892
NcoI	CCATGG	1 cut(s)	1061
NdeII	GATC	4 cut(s)	120, 507, 631, 651
NlaIII	CATG	3 cut(s)	1065, 1156, 1220
NlaIV	GGNNCC	9 cut(s)	58, 59, 265, 338, 394, 395, 685, 924, 963
NmeAIII	GCCGAG	2 cut(s)	346, 910
OliI	CACNNNNGTG	1 cut(s)	331
PaeR7I	CTCGAG	1 cut(s)	428
PagI	TCATGA	1 cut(s)	1216
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PctI	GAATGC	1 cut(s)	1167
PfeI	GAWTC	2 cut(s)	1052, 1274
PflFI	GACNNNGTC	3 cut(s)	311, 461, 524
PflMI	CCANNNNNTGG	1 cut(s)	1062
PkrI	GCNGC	8 cut(s)	46, 377, 454, 515, 541, 757, 790, 873
Ple19I	CGATCG	1 cut(s)	634
PleI	GAGTC	4 cut(s)	302, 533, 631, 736
PpsI	GAGTC	4 cut(s)	302, 533, 631, 736
Psp6I	CCWGG	6 cut(s)	254, 259, 396, 516, 591, 601
PspGI	CCWGG	6 cut(s)	254, 259, 396, 516, 591, 601
PspN4I	GGNNCC	9 cut(s)	58, 59, 265, 338, 394, 395, 685, 924, 963
PspOMI	GGGCCC	3 cut(s)	57, 336, 393
PspXI	VCTCGAGB	1 cut(s)	428
PsrI	GAACNNNNNNTAC	2 cut(s)	131, 163
PsyI	GACNNNGTC	3 cut(s)	311, 461, 524
PvuI	CGATCG	1 cut(s)	634
RsaI	GTAC	2 cut(s)	425, 695
RsaNI	GTAC	2 cut(s)	424, 694
RseI	CAYNNNNRTG	1 cut(s)	331
SaqAI	TTAA	1 cut(s)	897
SatI	GCNGC	8 cut(s)	45, 376, 453, 514, 540, 756, 789, 872
Sau3AI	GATC	4 cut(s)	120, 507, 631, 651
SchI	GAGTC	4 cut(s)	302, 534, 631, 736
SduI	GDGCHC	5 cut(s)	61, 340, 397, 681, 964
SfaNI	GCATC	4 cut(s)	420, 1100, 1132, 1139
SfcI	CTRYAG	2 cut(s)	1018, 1086
Sfr274I	CTCGAG	1 cut(s)	428
SinI	GGWCC	3 cut(s)	684, 922, 1004
SlaI	CTCGAG	1 cut(s)	428
SmaI	CCCGGG	1 cut(s)	676
SmiMI	CAYNNNNRTG	1 cut(s)	331
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	3 cut(s)	715, 976, 993
StyI	CCWWGG	2 cut(s)	546, 1061
TaaI	ACNGT	3 cut(s)	478, 919, 1246
TaiI	ACGT	1 cut(s)	570
TaqI	TCGA	4 cut(s)	306, 429, 745, 765
TaqII	GACCGA	2 cut(s)	799, 1021
TasI	AATT	3 cut(s)	715, 976, 993
TauI	GCSGC	7 cut(s)	47, 378, 455, 516, 542, 758, 791
TfiI	GAWTC	2 cut(s)	1052, 1274
Tru1I	TTAA	1 cut(s)	897
Tru9I	TTAA	1 cut(s)	897
TscAI	CASTG	1 cut(s)	1291
TseI	GCWGC	1 cut(s)	871
TspDTI	ATGAA	4 cut(s)	737, 878, 1205, 1287
TspGWI	ACGGA	5 cut(s)	301, 537, 630, 1267, 1288
TspMI	CCCGGG	1 cut(s)	674
TspRI	CASTG	1 cut(s)	1291
Tth111I	GACNNNGTC	3 cut(s)	311, 461, 524
Van91I	CCANNNNNTGG	1 cut(s)	1062
VpaK11BI	GGWCC	3 cut(s)	684, 922, 1004
XapI	RAATTY	2 cut(s)	715, 976
XcmI	CCANNNNNNNNNTGG	1 cut(s)	599
XhoI	CTCGAG	1 cut(s)	428
XmaI	CCCGGG	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.