Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006711

Physical Location & Seq

Genomic Coordinates Reverse (-)

33339024 .. 33340543

Gene Structure 1520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018651

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTCTGCTACGATTCGGTTATGTTTAAGCTCCGACCAGACCATCCCTTCCCTCCCCCTCAACTCCCACCTCGACTCCGTCCCCGCCGAGCTTTCCAAGTGGGCCCACCGCACCCCAGAATGCCACATCTTCACCCGCGGCGCCCAGGACGACAAGTGCATCGCCATCCAGTACCTCGAGGCAATCCGCAATCTCAAAGCCGTAGGCTTCAACCCAATCTGCACCGTCCATGTGCCTTACGTCCCCGACGAGGAGATCGGCAGCCTCAACGGCGCCGCCAAGTTCGCCGTCTCTAACGAGTTCAAGGAACTGAAGGTCGGGTTTGTTTTGGACGAGGGTCAGGCCAACCCCGACAATGAGATTTGGGTCTTTTACGCTGATCGGACGCCGTGGAATTTGATCGTCAAGGCGAAAGGGACACCAAAATCCAGGTGGGTCTTGTCGGAAATTCAGTCCAGGAATAACAGTATCATCAGGCTATCTGGTTATTATTACTTGAGGAGGAGGAGGTTCAGGGTCTGCTGCAAAGCTCAAGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004046 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0016787 GO:0016810 GO:0016811 GO:0031982 GO:0042802 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0070062 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

181

Amino Acids

20.47

Weight (kDa)

8.92

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M28	PF04389	18 - 142	6.1e-07	Peptidase family M28
Peptidase_M20	PF01546	20 - 110	1.6e-13	Peptidase family M20/M25/M40

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44180 AT1G44180 AT1G44180 AT1G44820
fragaria_vesca	FvH4_2g26640 FvH4_2g26640 FvH4_2g26640
malus_domestica	MD15G1352300.v1.1
prunus_persica	Prupe.1G500800_v2.0.a1
pyrus_communis	pycom15g31580
rosa_chinensis	RchiOBHm_Chr6g0295491
rosa_laevigata	RLG00000000786 RLG00000011796 RLG00000013633 RLG00000018651 RLG00000028911
rosa_multiflora	Rmu_sc0005712.1_g000028 Rmu_sc0012290.1_g000002 Rmu_sc0012865.1_g000005
rosa_roxburghii	Rroxscaffold_7G00172430
rosa_rugosa	Rorug06G0251400
rosa_samantha	Rh6AG364600 Rh6BG373000 Rh6CG379200 Rh6DG365600
rosa_wichuraiana	Rw6G031840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	176
AccB1I	GGYRCC	2 cut(s)	140, 272
AccII	CGCG	1 cut(s)	138
AciI	CCGC	6 cut(s)	84, 109, 136, 138, 187, 276
AcsI	RAATTY	2 cut(s)	394, 447
AcuI	CTGAAG	1 cut(s)	332
AcyI	GRCGYC	3 cut(s)	141, 273, 386
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	250
AgsI	TTSAA	2 cut(s)	211, 304
AjnI	CCWGG	3 cut(s)	144, 428, 455
AluBI	AGCT	3 cut(s)	30, 91, 530
AluI	AGCT	3 cut(s)	30, 91, 530
Alw26I	GTCTC	1 cut(s)	295
AlwNI	CAGNNNCTG	1 cut(s)	519
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	2 cut(s)	102, 342
ApaI	GGGCCC	1 cut(s)	106
ApeKI	GCWGC	2 cut(s)	261, 522
ApoI	RAATTY	2 cut(s)	394, 447
AspLEI	GCGC	2 cut(s)	143, 275
AspS9I	GGNCC	2 cut(s)	102, 103
AsuHPI	GGTGA	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	106
BanI	GGYRCC	2 cut(s)	140, 272
BanII	GRGCYC	1 cut(s)	106
BbvI	GCAGC	2 cut(s)	273, 509
BccI	CCATC	2 cut(s)	50, 173
BceAI	ACGGC	4 cut(s)	185, 272, 286, 373
BciT130I	CCWGG	3 cut(s)	146, 430, 457
BcoDI	GTCTC	1 cut(s)	295
BfoI	RGCGCY	2 cut(s)	144, 276
BglI	GCCNNNNNGGC	1 cut(s)	270
BisI	GCNGC	4 cut(s)	139, 262, 276, 523
BlsI	GCNGC	4 cut(s)	140, 263, 277, 524
Bme1390I	CCNGG	3 cut(s)	146, 430, 457
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	2 cut(s)	102, 103
BmiI	GGNNCC	3 cut(s)	104, 142, 274
BmrFI	CCNGG	3 cut(s)	146, 430, 457
BmsI	GCATC	1 cut(s)	168
BoxI	GACNNNNGTC	1 cut(s)	336
BpuEI	CTTGAG	2 cut(s)	516, 517
BsaHI	GRCGYC	3 cut(s)	141, 273, 386
BsaJI	CCNNGG	3 cut(s)	136, 144, 389
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse1I	ACTGG	1 cut(s)	169
BseBI	CCWGG	3 cut(s)	146, 430, 457
BseDI	CCNNGG	3 cut(s)	136, 144, 389
BseGI	GGATG	2 cut(s)	42, 165
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	4 cut(s)	266, 514, 517, 520
BseSI	GKGCMC	1 cut(s)	106
BseXI	GCAGC	2 cut(s)	273, 509
BsgI	GTGCAG	1 cut(s)	205
Bsh1236I	CGCG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	104, 344
BshNI	GGYRCC	2 cut(s)	140, 272
BsiHKCI	CYCGRG	1 cut(s)	176
BslFI	GGGAC	3 cut(s)	65, 227, 430
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	295
BsmBI	CGTCTC	1 cut(s)	295
BsmFI	GGGAC	3 cut(s)	65, 227, 430
BsmI	GAATGC	1 cut(s)	125
BsnI	GGCC	2 cut(s)	104, 344
BsoBI	CYCGRG	1 cut(s)	176
Bsp120I	GGGCCC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	3 cut(s)	255, 379, 399
BspACI	CCGC	6 cut(s)	84, 109, 136, 138, 187, 276
BspANI	GGCC	2 cut(s)	104, 344
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	3 cut(s)	104, 142, 274
BspT107I	GGYRCC	2 cut(s)	140, 272
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	3 cut(s)	136, 144, 389
BssMI	GATC	3 cut(s)	255, 379, 399
BssNI	GRCGYC	3 cut(s)	141, 273, 386
Bst2UI	CCWGG	3 cut(s)	146, 430, 457
Bst4CI	ACNGT	2 cut(s)	226, 467
BstACI	GRCGYC	3 cut(s)	141, 273, 386
BstDSI	CCRYGG	2 cut(s)	136, 389
BstF5I	GGATG	2 cut(s)	42, 165
BstFNI	CGCG	1 cut(s)	138
BstH2I	RGCGCY	2 cut(s)	144, 276
BstHHI	GCGC	2 cut(s)	143, 275
BstKTI	GATC	3 cut(s)	258, 382, 402
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	3 cut(s)	255, 379, 399
BstMWI	GCNNNNNNNGC	2 cut(s)	270, 284
BstNI	CCWGG	3 cut(s)	146, 430, 457
BstPAI	GACNNNNGTC	1 cut(s)	336
BstSCI	CCNGG	3 cut(s)	144, 428, 455
BstSLI	GKGCMC	1 cut(s)	106
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	273, 509
BsuRI	GGCC	2 cut(s)	104, 344
BtgI	CCRYGG	2 cut(s)	136, 389
BtgZI	GCGATG	1 cut(s)	145
BtsCI	GGATG	2 cut(s)	42, 165
CaiI	CAGNNNCTG	1 cut(s)	519
CfoI	GCGC	2 cut(s)	143, 275
Cfr13I	GGNCC	2 cut(s)	102, 103
Cfr42I	CCGCGG	1 cut(s)	139
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	1 cut(s)	230
CviJI	RGCY	9 cut(s)	30, 91, 104, 200, 207, 264, 344, 478, 530
CviKI_1	RGCY	9 cut(s)	30, 91, 104, 200, 207, 264, 344, 478, 530
CviQI	GTAC	1 cut(s)	172
DinI	GGCGCC	2 cut(s)	142, 274
DpnI	GATC	3 cut(s)	257, 381, 401
DpnII	GATC	3 cut(s)	255, 379, 399
Eco24I	GRGCYC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	332
Eco88I	CYCGRG	1 cut(s)	176
EcoRII	CCWGG	3 cut(s)	144, 428, 455
EcoT38I	GRGCYC	1 cut(s)	106
EgeI	GGCGCC	2 cut(s)	142, 274
EheI	GGCGCC	2 cut(s)	142, 274
Esp3I	CGTCTC	1 cut(s)	295
FaeI	CATG	1 cut(s)	233
FaiI	YATR	2 cut(s)	22, 231
FaqI	GGGAC	3 cut(s)	65, 227, 430
FatI	CATG	1 cut(s)	229
FauI	CCCGC	2 cut(s)	91, 143
Fnu4HI	GCNGC	4 cut(s)	139, 262, 276, 523
FokI	GGATG	2 cut(s)	29, 152
FriOI	GRGCYC	1 cut(s)	106
Fsp4HI	GCNGC	4 cut(s)	139, 262, 276, 523
GlaI	GCGC	2 cut(s)	142, 274
GluI	GCNGC	4 cut(s)	139, 262, 276, 523
HaeII	RGCGCY	2 cut(s)	144, 276
HaeIII	GGCC	2 cut(s)	104, 344
HgaI	GACGC	1 cut(s)	394
HhaI	GCGC	2 cut(s)	143, 275
Hin1I	GRCGYC	3 cut(s)	141, 273, 386
Hin1II	CATG	1 cut(s)	233
Hin6I	GCGC	2 cut(s)	141, 273
HinP1I	GCGC	2 cut(s)	141, 273
HinfI	GANTC	2 cut(s)	13, 74
HphI	GGTGA	1 cut(s)	124
Hpy188I	TCNGA	3 cut(s)	34, 384, 445
Hpy188III	TCNNGA	1 cut(s)	533
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	2 cut(s)	57, 307
HpyCH4III	ACNGT	2 cut(s)	226, 467
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	3 cut(s)	159, 222, 525
HpyF10VI	GCNNNNNNNGC	2 cut(s)	270, 284
HpySE526I	ACGT	1 cut(s)	240
Hsp92I	GRCGYC	3 cut(s)	141, 273, 386
Hsp92II	CATG	1 cut(s)	233
HspAI	GCGC	2 cut(s)	141, 273
KasI	GGCGCC	2 cut(s)	140, 272
KspI	CCGCGG	1 cut(s)	139
Kzo9I	GATC	3 cut(s)	255, 379, 399
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	2 cut(s)	273, 509
LweI	GCATC	1 cut(s)	168
MaeII	ACGT	1 cut(s)	240
MalI	GATC	3 cut(s)	257, 381, 401
MboI	GATC	3 cut(s)	255, 379, 399
MboII	GAAGA	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	106
MluCI	AATT	2 cut(s)	394, 447
Mly113I	GGCGCC	2 cut(s)	141, 273
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	2 cut(s)	57, 423
MseI	TTAA	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	138
MspR9I	CCNGG	3 cut(s)	146, 430, 457
Mva1269I	GAATGC	1 cut(s)	125
MvaI	CCWGG	3 cut(s)	146, 430, 457
MvnI	CGCG	1 cut(s)	138
MwoI	GCNNNNNNNGC	2 cut(s)	270, 284
NarI	GGCGCC	2 cut(s)	141, 273
NdeII	GATC	3 cut(s)	255, 379, 399
NlaIII	CATG	1 cut(s)	233
NlaIV	GGNNCC	3 cut(s)	104, 142, 274
NmeAIII	GCCGAG	1 cut(s)	112
PaeR7I	CTCGAG	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PctI	GAATGC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	13
PflFI	GACNNNGTC	1 cut(s)	77
PfoI	TCCNGGA	1 cut(s)	455
PkrI	GCNGC	4 cut(s)	140, 263, 277, 524
PleI	GAGTC	1 cut(s)	68
PluTI	GGCGCC	2 cut(s)	144, 276
PpsI	GAGTC	1 cut(s)	68
PshAI	GACNNNNGTC	1 cut(s)	336
Psp6I	CCWGG	3 cut(s)	144, 428, 455
PspGI	CCWGG	3 cut(s)	144, 428, 455
PspN4I	GGNNCC	3 cut(s)	104, 142, 274
PspOMI	GGGCCC	1 cut(s)	102
PspPI	GGNCC	2 cut(s)	102, 103
PspXI	VCTCGAGB	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	519
PsyI	GACNNNGTC	1 cut(s)	77
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SacII	CCGCGG	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	26
SatI	GCNGC	4 cut(s)	139, 262, 276, 523
Sau3AI	GATC	3 cut(s)	255, 379, 399
Sau96I	GGNCC	2 cut(s)	102, 103
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	3 cut(s)	146, 430, 457
SduI	GDGCHC	1 cut(s)	106
SetI	ASST	9 cut(s)	32, 72, 93, 177, 243, 318, 434, 512, 532
SfaNI	GCATC	1 cut(s)	168
SfoI	GGCGCC	2 cut(s)	142, 274
Sfr274I	CTCGAG	1 cut(s)	176
Sfr303I	CCGCGG	1 cut(s)	139
SgrBI	CCGCGG	1 cut(s)	139
SlaI	CTCGAG	1 cut(s)	176
SmlI	CTYRAG	3 cut(s)	176, 496, 531
SmoI	CTYRAG	3 cut(s)	176, 496, 531
Sse9I	AATT	2 cut(s)	394, 447
SsiI	CCGC	6 cut(s)	84, 109, 136, 138, 187, 276
SspDI	GGCGCC	2 cut(s)	140, 272
StyD4I	CCNGG	3 cut(s)	144, 428, 455
TaaI	ACNGT	2 cut(s)	226, 467
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	2 cut(s)	72, 177
TasI	AATT	2 cut(s)	394, 447
TauI	GCSGC	2 cut(s)	141, 278
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TseI	GCWGC	2 cut(s)	261, 522
TspGWI	ACGGA	1 cut(s)	67
Tth111I	GACNNNGTC	1 cut(s)	77
XapI	RAATTY	2 cut(s)	394, 447
XcmI	CCANNNNNNNNNTGG	1 cut(s)	429
XhoI	CTCGAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.