Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006711

Physical Location & Seq

Genomic Coordinates Reverse (-)

60207356 .. 60210679

Gene Structure 3324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG373000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGTCTAATCCTCCCAACTCCTTCATCTTCTTCTTCTTCACACTCACACTCCTCCTCATCGCCACCCGGGCCCACCCACCAGAACAACCCGAACCCGGCACTCCCGTCACCCGCTTCCAGAACTACCTCCGGATCAGAACGGCCCACCCGAGCCCGGACTACTACGCCGCCGTCTCTTACCTCAAAGCCCAGGCCGAGTCCATCGGCCTCCACTCCCGCACCCTCCACTTCGCCCCCGACAAGCCCCTCCTCCTCCTCACCTGGCCGGGCTCCGACCCGACCCTCCCTTCCCTCCTCCTCAACTCCCACCTCGACTCCGTCCCCGCCGAGCCCTCCAAGTGGGCCCACCCGCCCTTCTCGGCCCACCGCACCCCCGAAGGCCACATCTTCGCCCGCGGCGCCCAGGACGACAAGTGCATCGCCATCCAGTACCTCGAGGCCATCCGCAACCTCAAAGCCGCAGGCTTCAACCCAATCCGCACCGTCCACGTGTCCTACGTCCCCGAGGAGGAGATCGGCGGCCTCGACGGCGCCGCCAAGTTCGCCGTCTCTGACGAGTTCAAGGAACTGAAGGTCGGGTTTGTTTTGGACGAGGGTCAGGCCAACCCCGGCGACGAGATTCGGGTCTTCTACGCTGATCGGACGCCGTGGAATTTGATCGTCAAGGCGAAGGGGATGCCCGGCCATGGTTCTAGAATGTTCGACAATAGTGCCATGGAGAATCTGATGAAGAGCGTTGAGCTTATGGCGAGGTTCAGGGAGGCTCAGTTCGATGAGGTCAAGGCAGGGAATGCTGCTAATTCGGAGGTCATTTCGGTCAATCCGGTTTATTTCAAATCCGGGATTGTTTCCGGCGATGTGAGAGTCATGTGGTTATTGTTGTGTTTGGTGTTTGAAATTTGTTTTGATCACAAAGACAAAGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004046 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0016787 GO:0016810 GO:0016811 GO:0031982 GO:0042802 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0070062 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

309

Amino Acids

34.36

Weight (kDa)

6.12

Isoelectric Point (pI)

33.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M28	PF04389	86 - 224	2.2e-09	Peptidase family M28
Peptidase_M20	PF01546	99 - 197	6.4e-20	Peptidase family M20/M25/M40

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44180 AT1G44180 AT1G44180 AT1G44820
fragaria_vesca	FvH4_2g26640 FvH4_2g26640 FvH4_2g26640
malus_domestica	MD15G1352300.v1.1
prunus_persica	Prupe.1G500800_v2.0.a1
pyrus_communis	pycom15g31580
rosa_chinensis	RchiOBHm_Chr6g0295491
rosa_laevigata	RLG00000000786 RLG00000011796 RLG00000013633 RLG00000018651 RLG00000028911
rosa_multiflora	Rmu_sc0005712.1_g000028 Rmu_sc0012290.1_g000002 Rmu_sc0012865.1_g000005
rosa_roxburghii	Rroxscaffold_7G00172430
rosa_rugosa	Rorug06G0251400
rosa_samantha	Rh6AG364600 Rh6BG373000 Rh6CG379200 Rh6DG365600
rosa_wichuraiana	Rw6G031840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	434
AccB1I	GGYRCC	2 cut(s)	398, 530
AccII	CGCG	1 cut(s)	396
AccIII	TCCGGA	1 cut(s)	129
AclWI	GGATC	1 cut(s)	140
AcoI	YGGCCR	2 cut(s)	263, 682
AcsI	RAATTY	2 cut(s)	652, 897
AcuI	CTGAAG	1 cut(s)	590
AcvI	CACGTG	1 cut(s)	490
AcyI	GRCGYC	3 cut(s)	399, 531, 644
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	5 cut(s)	95, 154, 339, 508, 686
AflIII	ACRYGT	1 cut(s)	489
AgsI	TTSAA	4 cut(s)	469, 562, 835, 896
AjnI	CCWGG	3 cut(s)	189, 260, 402
AloI	GAACNNNNNNTCC	2 cut(s)	752, 784
AluBI	AGCT	1 cut(s)	742
AluI	AGCT	1 cut(s)	742
Alw26I	GTCTC	2 cut(s)	178, 553
AlwI	GGATC	1 cut(s)	140
Ama87I	CYCGRG	4 cut(s)	66, 148, 434, 503
Aor13HI	TCCGGA	1 cut(s)	129
ApaI	GGGCCC	2 cut(s)	73, 346
ApeKI	GCWGC	1 cut(s)	794
ApoI	RAATTY	2 cut(s)	652, 897
AspLEI	GCGC	2 cut(s)	401, 533
AspS9I	GGNCC	6 cut(s)	69, 70, 142, 342, 343, 361
AsuC2I	CCSGG	8 cut(s)	67, 68, 96, 155, 267, 609, 681, 841
AsuHPI	GGTGA	2 cut(s)	100, 250
AvaI	CYCGRG	4 cut(s)	66, 148, 434, 503
BaeGI	GKGCMC	2 cut(s)	73, 346
BanI	GGYRCC	2 cut(s)	398, 530
BanII	GRGCYC	5 cut(s)	73, 155, 272, 333, 346
BbrPI	CACGTG	1 cut(s)	490
BbsI	GAAGAC	1 cut(s)	619
BbvI	GCAGC	1 cut(s)	781
BccI	CCATC	3 cut(s)	209, 431, 449
BceAI	ACGGC	5 cut(s)	155, 156, 530, 544, 631
BcgI	CGANNNNNNTGC	4 cut(s)	658, 692, 692, 726
BciT130I	CCWGG	3 cut(s)	191, 262, 404
BclI	TGATCA	1 cut(s)	907
BcnI	CCSGG	8 cut(s)	67, 68, 96, 155, 267, 609, 681, 841
BcoDI	GTCTC	2 cut(s)	178, 553
BfaI	CTAG	1 cut(s)	693
BfoI	RGCGCY	2 cut(s)	402, 534
BglI	GCCNNNNNGGC	2 cut(s)	68, 528
BisI	GCNGC	6 cut(s)	168, 397, 459, 520, 534, 795
BlsI	GCNGC	6 cut(s)	169, 398, 460, 521, 535, 796
BmeT110I	CYCGRG	4 cut(s)	66, 148, 434, 503
BmgT120I	GGNCC	6 cut(s)	69, 70, 142, 342, 343, 361
BmiI	GGNNCC	5 cut(s)	71, 271, 344, 400, 532
BmsI	GCATC	2 cut(s)	426, 666
BoxI	GACNNNNGTC	1 cut(s)	594
BpiI	GAAGAC	1 cut(s)	619
BpuMI	CCSGG	8 cut(s)	67, 68, 96, 155, 267, 609, 681, 841
BsaAI	YACGTR	1 cut(s)	490
BsaHI	GRCGYC	3 cut(s)	399, 531, 644
BsaJI	CCNNGG	9 cut(s)	66, 189, 394, 402, 504, 607, 647, 685, 714
BsaWI	WCCGGW	2 cut(s)	129, 823
BsaXI	ACNNNNNCTCC	6 cut(s)	33, 63, 299, 329, 752, 782
Bsc4I	CCNNNNNNNGG	5 cut(s)	95, 154, 339, 508, 686
Bse1I	ACTGG	1 cut(s)	427
BseAI	TCCGGA	1 cut(s)	129
BseBI	CCWGG	3 cut(s)	191, 262, 404
BseDI	CCNNGG	9 cut(s)	66, 189, 394, 402, 504, 607, 647, 685, 714
BseGI	GGATG	3 cut(s)	423, 441, 681
BseLI	CCNNNNNNNGG	5 cut(s)	95, 154, 339, 508, 686
BseMII	CTCAG	1 cut(s)	779
BseNI	ACTGG	1 cut(s)	427
BseRI	GAGGAG	9 cut(s)	41, 44, 239, 242, 245, 284, 287, 521, 524
BseSI	GKGCMC	2 cut(s)	73, 346
BseXI	GCAGC	1 cut(s)	781
Bsh1236I	CGCG	1 cut(s)	396
BshNI	GGYRCC	2 cut(s)	398, 530
BsiHKCI	CYCGRG	4 cut(s)	66, 148, 434, 503
BslFI	GGGAC	2 cut(s)	305, 485
BslI	CCNNNNNNNGG	5 cut(s)	95, 154, 339, 508, 686
BsmAI	GTCTC	2 cut(s)	178, 553
BsmBI	CGTCTC	2 cut(s)	178, 553
BsmFI	GGGAC	2 cut(s)	305, 485
BsmI	GAATGC	1 cut(s)	796
BsoBI	CYCGRG	4 cut(s)	66, 148, 434, 503
Bsp120I	GGGCCC	2 cut(s)	69, 342
Bsp1286I	GDGCHC	5 cut(s)	73, 155, 272, 333, 346
Bsp13I	TCCGGA	1 cut(s)	129
Bsp143I	GATC	5 cut(s)	132, 513, 637, 657, 907
Bsp19I	CCATGG	2 cut(s)	685, 714
BspCNI	CTCAG	1 cut(s)	778
BspEI	TCCGGA	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	396
BspLI	GGNNCC	5 cut(s)	71, 271, 344, 400, 532
BspPI	GGATC	1 cut(s)	140
BspQI	GCTCTTC	1 cut(s)	725
BspT107I	GGYRCC	2 cut(s)	398, 530
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	9 cut(s)	66, 189, 394, 402, 504, 607, 647, 685, 714
BssMI	GATC	5 cut(s)	132, 513, 637, 657, 907
BssNI	GRCGYC	3 cut(s)	399, 531, 644
BssT1I	CCWWGG	2 cut(s)	685, 714
Bst2UI	CCWGG	3 cut(s)	191, 262, 404
Bst4CI	ACNGT	1 cut(s)	484
Bst6I	CTCTTC	1 cut(s)	725
BstACI	GRCGYC	3 cut(s)	399, 531, 644
BstAPI	GCANNNNNTGC	1 cut(s)	791
BstBAI	YACGTR	1 cut(s)	490
BstC8I	GCNNGC	2 cut(s)	394, 463
BstDEI	CTNAG	1 cut(s)	765
BstDSI	CCRYGG	4 cut(s)	394, 647, 685, 714
BstF5I	GGATG	3 cut(s)	423, 441, 681
BstFNI	CGCG	1 cut(s)	396
BstH2I	RGCGCY	2 cut(s)	402, 534
BstHHI	GCGC	2 cut(s)	401, 533
BstKTI	GATC	5 cut(s)	135, 516, 640, 660, 910
BstMAI	GTCTC	2 cut(s)	178, 553
BstMBI	GATC	5 cut(s)	132, 513, 637, 657, 907
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 398, 528, 542, 791
BstNI	CCWGG	3 cut(s)	191, 262, 404
BstPAI	GACNNNNGTC	1 cut(s)	594
BstSLI	GKGCMC	2 cut(s)	73, 346
BstUI	CGCG	1 cut(s)	396
BstV1I	GCAGC	1 cut(s)	781
BstV2I	GAAGAC	1 cut(s)	619
BtgI	CCRYGG	4 cut(s)	394, 647, 685, 714
BtgZI	GCGATG	3 cut(s)	43, 403, 870
BtsCI	GGATG	3 cut(s)	423, 441, 681
Cac8I	GCNNGC	2 cut(s)	394, 463
CfoI	GCGC	2 cut(s)	401, 533
Cfr13I	GGNCC	6 cut(s)	69, 70, 142, 342, 343, 361
Cfr42I	CCGCGG	1 cut(s)	397
Cfr9I	CCCGGG	1 cut(s)	66
CseI	GACGC	1 cut(s)	652
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	3 cut(s)	686, 715, 868
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	1 cut(s)	765
DinI	GGCGCC	2 cut(s)	400, 532
DpnI	GATC	5 cut(s)	134, 515, 639, 659, 909
DpnII	GATC	5 cut(s)	132, 513, 637, 657, 907
EaeI	YGGCCR	2 cut(s)	263, 682
Eam1104I	CTCTTC	1 cut(s)	725
EarI	CTCTTC	1 cut(s)	725
Eco130I	CCWWGG	2 cut(s)	685, 714
Eco24I	GRGCYC	5 cut(s)	73, 155, 272, 333, 346
Eco57I	CTGAAG	1 cut(s)	590
Eco72I	CACGTG	1 cut(s)	490
Eco88I	CYCGRG	4 cut(s)	66, 148, 434, 503
EcoRII	CCWGG	3 cut(s)	189, 260, 402
EcoT14I	CCWWGG	2 cut(s)	685, 714
EcoT38I	GRGCYC	5 cut(s)	73, 155, 272, 333, 346
EgeI	GGCGCC	2 cut(s)	400, 532
EheI	GGCGCC	2 cut(s)	400, 532
ErhI	CCWWGG	2 cut(s)	685, 714
Esp3I	CGTCTC	2 cut(s)	178, 553
FaeI	CATG	3 cut(s)	689, 718, 871
FaiI	YATR	4 cut(s)	687, 716, 746, 869
FaqI	GGGAC	2 cut(s)	305, 485
FatI	CATG	3 cut(s)	685, 714, 867
FauI	CCCGC	5 cut(s)	119, 224, 331, 357, 401
FbaI	TGATCA	1 cut(s)	907
Fnu4HI	GCNGC	6 cut(s)	168, 397, 459, 520, 534, 795
FokI	GGATG	3 cut(s)	410, 428, 688
FriOI	GRGCYC	5 cut(s)	73, 155, 272, 333, 346
Fsp4HI	GCNGC	6 cut(s)	168, 397, 459, 520, 534, 795
FspBI	CTAG	1 cut(s)	693
GlaI	GCGC	2 cut(s)	400, 532
GluI	GCNGC	6 cut(s)	168, 397, 459, 520, 534, 795
HaeII	RGCGCY	2 cut(s)	402, 534
HgaI	GACGC	1 cut(s)	652
HhaI	GCGC	2 cut(s)	401, 533
Hin1I	GRCGYC	3 cut(s)	399, 531, 644
Hin1II	CATG	3 cut(s)	689, 718, 871
Hin6I	GCGC	2 cut(s)	399, 531
HinP1I	GCGC	2 cut(s)	399, 531
HinfI	GANTC	5 cut(s)	197, 314, 619, 721, 864
HphI	GGTGA	2 cut(s)	100, 250
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	6 cut(s)	137, 274, 553, 642, 726, 805
Hpy188III	TCNNGA	3 cut(s)	118, 130, 693
Hpy8I	GTNNAC	1 cut(s)	487
Hpy99I	CGWCG	2 cut(s)	530, 617
HpyAV	CCTTC	6 cut(s)	31, 297, 364, 371, 565, 664
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4IV	ACGT	2 cut(s)	489, 498
HpyCH4V	TGCA	1 cut(s)	417
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 398, 528, 542, 791
HpyF3I	CTNAG	1 cut(s)	765
HpySE526I	ACGT	2 cut(s)	489, 498
Hsp92I	GRCGYC	3 cut(s)	399, 531, 644
Hsp92II	CATG	3 cut(s)	689, 718, 871
HspAI	GCGC	2 cut(s)	399, 531
KasI	GGCGCC	2 cut(s)	398, 530
Kpn2I	TCCGGA	1 cut(s)	129
Ksp22I	TGATCA	1 cut(s)	907
KspI	CCGCGG	1 cut(s)	397
Kzo9I	GATC	5 cut(s)	132, 513, 637, 657, 907
LguI	GCTCTTC	1 cut(s)	725
LmnI	GCTCC	1 cut(s)	275
Lsp1109I	GCAGC	1 cut(s)	781
LweI	GCATC	2 cut(s)	426, 666
MaeI	CTAG	1 cut(s)	693
MaeII	ACGT	2 cut(s)	489, 498
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	5 cut(s)	134, 515, 639, 659, 909
MboI	GATC	5 cut(s)	132, 513, 637, 657, 907
MboII	GAAGA	7 cut(s)	19, 22, 25, 28, 379, 619, 742
MhlI	GDGCHC	5 cut(s)	73, 155, 272, 333, 346
MluCI	AATT	3 cut(s)	652, 799, 897
Mly113I	GGCGCC	2 cut(s)	399, 531
MlyI	GAGTC	3 cut(s)	206, 308, 873
MmeI	TCCRAC	1 cut(s)	297
MroI	TCCGGA	1 cut(s)	129
MspA1I	CMGCKG	1 cut(s)	396
Mva1269I	GAATGC	1 cut(s)	796
MvaI	CCWGG	3 cut(s)	191, 262, 404
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	5 cut(s)	68, 398, 528, 542, 791
NarI	GGCGCC	2 cut(s)	399, 531
NciI	CCSGG	8 cut(s)	67, 68, 96, 155, 267, 609, 681, 841
NcoI	CCATGG	2 cut(s)	685, 714
NdeII	GATC	5 cut(s)	132, 513, 637, 657, 907
NlaIII	CATG	3 cut(s)	689, 718, 871
NlaIV	GGNNCC	5 cut(s)	71, 271, 344, 400, 532
NmeAIII	GCCGAG	3 cut(s)	220, 338, 352
NmuCI	GTSAC	1 cut(s)	106
PaeR7I	CTCGAG	1 cut(s)	434
PciSI	GCTCTTC	1 cut(s)	725
PcsI	WCGNNNNNNNCGW	3 cut(s)	146, 495, 522
PctI	GAATGC	1 cut(s)	796
PfeI	GAWTC	2 cut(s)	619, 721
PflFI	GACNNNGTC	1 cut(s)	317
PfoI	TCCNGGA	1 cut(s)	839
PkrI	GCNGC	6 cut(s)	169, 398, 460, 521, 535, 796
PleI	GAGTC	3 cut(s)	205, 308, 872
PluTI	GGCGCC	2 cut(s)	402, 534
PmaCI	CACGTG	1 cut(s)	490
PmlI	CACGTG	1 cut(s)	490
PpsI	GAGTC	3 cut(s)	205, 308, 872
Ppu21I	YACGTR	1 cut(s)	490
PshAI	GACNNNNGTC	1 cut(s)	594
Psp6I	CCWGG	3 cut(s)	189, 260, 402
PspCI	CACGTG	1 cut(s)	490
PspGI	CCWGG	3 cut(s)	189, 260, 402
PspN4I	GGNNCC	5 cut(s)	71, 271, 344, 400, 532
PspOMI	GGGCCC	2 cut(s)	69, 342
PspPI	GGNCC	6 cut(s)	69, 70, 142, 342, 343, 361
PspXI	VCTCGAGB	1 cut(s)	434
PsyI	GACNNNGTC	1 cut(s)	317
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
SacII	CCGCGG	1 cut(s)	397
SapI	GCTCTTC	1 cut(s)	725
SatI	GCNGC	6 cut(s)	168, 397, 459, 520, 534, 795
Sau3AI	GATC	5 cut(s)	132, 513, 637, 657, 907
Sau96I	GGNCC	6 cut(s)	69, 70, 142, 342, 343, 361
SchI	GAGTC	3 cut(s)	206, 308, 873
SduI	GDGCHC	5 cut(s)	73, 155, 272, 333, 346
SfaNI	GCATC	2 cut(s)	426, 666
SfoI	GGCGCC	2 cut(s)	400, 532
Sfr274I	CTCGAG	1 cut(s)	434
Sfr303I	CCGCGG	1 cut(s)	397
SgrBI	CCGCGG	1 cut(s)	397
SlaI	CTCGAG	1 cut(s)	434
SmaI	CCCGGG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	3 cut(s)	652, 799, 897
SspDI	GGCGCC	2 cut(s)	398, 530
SspMI	CTAG	1 cut(s)	693
StyI	CCWWGG	2 cut(s)	685, 714
TaaI	ACNGT	1 cut(s)	484
TaiI	ACGT	2 cut(s)	492, 501
TaqI	TCGA	5 cut(s)	312, 435, 525, 702, 771
TaqII	GACCGA	1 cut(s)	805
TasI	AATT	3 cut(s)	652, 799, 897
TauI	GCSGC	5 cut(s)	170, 399, 461, 522, 536
TfiI	GAWTC	2 cut(s)	619, 721
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	1 cut(s)	794
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	2 cut(s)	13, 743
TspGWI	ACGGA	1 cut(s)	307
TspMI	CCCGGG	1 cut(s)	66
Tth111I	GACNNNGTC	1 cut(s)	317
XapI	RAATTY	2 cut(s)	652, 897
XbaI	TCTAGA	1 cut(s)	692
XhoI	CTCGAG	1 cut(s)	434
XmaI	CCCGGG	1 cut(s)	66
XspI	CTAG	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.