Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006711

Physical Location & Seq

Genomic Coordinates Forward (+)

34511069 .. 34514498

Gene Structure 3430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013633

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGCAAGGCTGTGGCAGGCGTTGTTCGCGGCGAGGTCAGTGGGGGTCCACGACGTTGATCGCTACAGGTGTGCCAGGCTCCGATCGCGCTTGTCTCAGCGAGGAGGCTGTGGCTTGTGCGCCGAGCCCTCCAAGTAGGCCCACCACACCCCCGAAGGCCACATCTTCACCCGTGGCACCCAGGACGACAAGTGCATCGCCATCCAGTACCTCGAGGCCATCCGCAATCTCAAAGCCGCAGGCTTCAACCCAATCCGCACCGTCCACGCCCTACGTCCCCGACGAGGAGATCAGCGACCTCAACGGCGCCGCCAAGTTCGCCGTCTCTAACGAGTTCAAGGAACTCAAGGTCGGGTTTGTTTTGGACGAGGGTCAAGCCAGCCCTGGTGATGGTCTTTTACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004046 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0016787 GO:0016810 GO:0016811 GO:0031982 GO:0042802 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0070062 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

135

Amino Acids

13.76

Weight (kDa)

8.44

Isoelectric Point (pI)

72.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44180 AT1G44180 AT1G44180 AT1G44820
fragaria_vesca	FvH4_2g26640 FvH4_2g26640 FvH4_2g26640
malus_domestica	MD15G1352300.v1.1
prunus_persica	Prupe.1G500800_v2.0.a1
pyrus_communis	pycom15g31580
rosa_chinensis	RchiOBHm_Chr6g0295491
rosa_laevigata	RLG00000000786 RLG00000011796 RLG00000013633 RLG00000018651 RLG00000028911
rosa_multiflora	Rmu_sc0005712.1_g000028 Rmu_sc0012290.1_g000002 Rmu_sc0012865.1_g000005
rosa_roxburghii	Rroxscaffold_7G00172430
rosa_rugosa	Rorug06G0251400
rosa_samantha	Rh6AG364600 Rh6BG373000 Rh6CG379200 Rh6DG365600
rosa_wichuraiana	Rw6G031840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	211
AccB1I	GGYRCC	2 cut(s)	175, 305
AccII	CGCG	2 cut(s)	28, 87
AciI	CCGC	5 cut(s)	28, 222, 236, 255, 309
AcyI	GRCGYC	1 cut(s)	306
AfaI	GTAC	1 cut(s)	208
AfiI	CCNNNNNNNGG	2 cut(s)	283, 389
AgsI	TTSAA	2 cut(s)	246, 337
AjnI	CCWGG	3 cut(s)	73, 179, 382
Alw26I	GTCTC	2 cut(s)	98, 328
Ama87I	CYCGRG	1 cut(s)	211
AoxI	GGCC	3 cut(s)	137, 156, 215
AspLEI	GCGC	3 cut(s)	89, 121, 308
AspS9I	GGNCC	2 cut(s)	45, 138
AsuHPI	GGTGA	2 cut(s)	159, 398
AvaI	CYCGRG	1 cut(s)	211
AvaII	GGWCC	1 cut(s)	45
BanI	GGYRCC	2 cut(s)	175, 305
BanII	GRGCYC	1 cut(s)	128
BccI	CCATC	3 cut(s)	208, 226, 383
BceAI	ACGGC	2 cut(s)	305, 319
BciT130I	CCWGG	3 cut(s)	75, 181, 384
BcoDI	GTCTC	2 cut(s)	98, 328
BfmI	CTRYAG	1 cut(s)	63
BfoI	RGCGCY	1 cut(s)	309
BisI	GCNGC	3 cut(s)	29, 236, 309
BlsI	GCNGC	3 cut(s)	30, 237, 310
Bme1390I	CCNGG	3 cut(s)	75, 181, 384
Bme18I	GGWCC	1 cut(s)	45
BmeT110I	CYCGRG	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	45, 138
BmiI	GGNNCC	4 cut(s)	46, 79, 177, 307
BmrFI	CCNGG	3 cut(s)	75, 181, 384
BmsI	GCATC	1 cut(s)	203
BoxI	GACNNNNGTC	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	329
BsaHI	GRCGYC	1 cut(s)	306
BsaJI	CCNNGG	3 cut(s)	171, 179, 382
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 389
Bse1I	ACTGG	1 cut(s)	204
BseBI	CCWGG	3 cut(s)	75, 181, 384
BseDI	CCNNGG	3 cut(s)	171, 179, 382
BseGI	GGATG	2 cut(s)	200, 218
BseLI	CCNNNNNNNGG	2 cut(s)	283, 389
BseMII	CTCAG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	2 cut(s)	116, 299
Bsh1236I	CGCG	2 cut(s)	28, 87
Bsh1285I	CGRYCG	1 cut(s)	85
BshFI	GGCC	3 cut(s)	139, 158, 217
BshNI	GGYRCC	2 cut(s)	175, 305
BsiEI	CGRYCG	1 cut(s)	85
BsiHKCI	CYCGRG	1 cut(s)	211
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	2 cut(s)	283, 389
BsmAI	GTCTC	2 cut(s)	98, 328
BsmBI	CGTCTC	1 cut(s)	328
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	3 cut(s)	139, 158, 217
BsoBI	CYCGRG	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	3 cut(s)	57, 82, 288
BspACI	CCGC	5 cut(s)	28, 222, 236, 255, 309
BspANI	GGCC	3 cut(s)	139, 158, 217
BspCNI	CTCAG	1 cut(s)	108
BspFNI	CGCG	2 cut(s)	28, 87
BspLI	GGNNCC	4 cut(s)	46, 79, 177, 307
BspT107I	GGYRCC	2 cut(s)	175, 305
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	3 cut(s)	171, 179, 382
BssMI	GATC	3 cut(s)	57, 82, 288
BssNI	GRCGYC	1 cut(s)	306
Bst2UI	CCWGG	3 cut(s)	75, 181, 384
Bst4CI	ACNGT	1 cut(s)	261
BstACI	GRCGYC	1 cut(s)	306
BstC8I	GCNNGC	3 cut(s)	17, 240, 379
BstDEI	CTNAG	1 cut(s)	95
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	200, 218
BstFNI	CGCG	2 cut(s)	28, 87
BstH2I	RGCGCY	1 cut(s)	309
BstHHI	GCGC	3 cut(s)	89, 121, 308
BstKTI	GATC	3 cut(s)	60, 85, 291
BstMAI	GTCTC	2 cut(s)	98, 328
BstMBI	GATC	3 cut(s)	57, 82, 288
BstMCI	CGRYCG	1 cut(s)	85
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 84, 317
BstNI	CCWGG	3 cut(s)	75, 181, 384
BstPAI	GACNNNNGTC	1 cut(s)	369
BstSCI	CCNGG	3 cut(s)	73, 179, 382
BstSFI	CTRYAG	1 cut(s)	63
BstUI	CGCG	2 cut(s)	28, 87
BsuRI	GGCC	3 cut(s)	139, 158, 217
BtgI	CCRYGG	1 cut(s)	171
BtgZI	GCGATG	1 cut(s)	180
BtsCI	GGATG	2 cut(s)	200, 218
BtsIMutI	CAGTG	1 cut(s)	44
Cac8I	GCNNGC	3 cut(s)	17, 240, 379
CfoI	GCGC	3 cut(s)	89, 121, 308
Cfr13I	GGNCC	2 cut(s)	45, 138
Csp6I	GTAC	1 cut(s)	207
CviQI	GTAC	1 cut(s)	207
DdeI	CTNAG	1 cut(s)	95
DinI	GGCGCC	1 cut(s)	307
DpnI	GATC	3 cut(s)	59, 84, 290
DpnII	GATC	3 cut(s)	57, 82, 288
Eco24I	GRGCYC	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	211
EcoRII	CCWGG	3 cut(s)	73, 179, 382
EcoT38I	GRGCYC	1 cut(s)	128
EgeI	GGCGCC	1 cut(s)	307
EheI	GGCGCC	1 cut(s)	307
Esp3I	CGTCTC	1 cut(s)	328
FaqI	GGGAC	1 cut(s)	260
Fnu4HI	GCNGC	3 cut(s)	29, 236, 309
FokI	GGATG	2 cut(s)	187, 205
FriOI	GRGCYC	1 cut(s)	128
Fsp4HI	GCNGC	3 cut(s)	29, 236, 309
GlaI	GCGC	3 cut(s)	88, 120, 307
GluI	GCNGC	3 cut(s)	29, 236, 309
HaeII	RGCGCY	1 cut(s)	309
HaeIII	GGCC	3 cut(s)	139, 158, 217
HhaI	GCGC	3 cut(s)	89, 121, 308
Hin1I	GRCGYC	1 cut(s)	306
Hin6I	GCGC	3 cut(s)	87, 119, 306
HinP1I	GCGC	3 cut(s)	87, 119, 306
HphI	GGTGA	2 cut(s)	159, 398
Hpy166II	GTNNAC	2 cut(s)	48, 264
Hpy188I	TCNGA	1 cut(s)	82
Hpy8I	GTNNAC	2 cut(s)	48, 264
Hpy99I	CGWCG	2 cut(s)	55, 284
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4IV	ACGT	3 cut(s)	53, 273, 400
HpyCH4V	TGCA	2 cut(s)	4, 194
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 84, 317
HpyF3I	CTNAG	1 cut(s)	95
HpySE526I	ACGT	3 cut(s)	53, 273, 400
Hsp92I	GRCGYC	1 cut(s)	306
HspAI	GCGC	3 cut(s)	87, 119, 306
KasI	GGCGCC	1 cut(s)	305
Kzo9I	GATC	3 cut(s)	57, 82, 288
LmnI	GCTCC	1 cut(s)	83
LweI	GCATC	1 cut(s)	203
MaeII	ACGT	3 cut(s)	53, 273, 400
MalI	GATC	3 cut(s)	59, 84, 290
MboI	GATC	3 cut(s)	57, 82, 288
MboII	GAAGA	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	128
Mly113I	GGCGCC	1 cut(s)	306
MnlI	CCTC	9 cut(s)	26, 94, 97, 138, 207, 220, 277, 308, 361
MspR9I	CCNGG	3 cut(s)	75, 181, 384
MvaI	CCWGG	3 cut(s)	75, 181, 384
MvnI	CGCG	2 cut(s)	28, 87
MwoI	GCNNNNNNNGC	3 cut(s)	25, 84, 317
NarI	GGCGCC	1 cut(s)	306
NdeII	GATC	3 cut(s)	57, 82, 288
NlaIV	GGNNCC	4 cut(s)	46, 79, 177, 307
NmeAIII	GCCGAG	1 cut(s)	147
PaeR7I	CTCGAG	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PkrI	GCNGC	3 cut(s)	30, 237, 310
Ple19I	CGATCG	1 cut(s)	85
PluTI	GGCGCC	1 cut(s)	309
PshAI	GACNNNNGTC	1 cut(s)	369
Psp6I	CCWGG	3 cut(s)	73, 179, 382
PspGI	CCWGG	3 cut(s)	73, 179, 382
PspN4I	GGNNCC	4 cut(s)	46, 79, 177, 307
PspPI	GGNCC	2 cut(s)	45, 138
PspXI	VCTCGAGB	1 cut(s)	211
PvuI	CGATCG	1 cut(s)	85
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
SatI	GCNGC	3 cut(s)	29, 236, 309
Sau3AI	GATC	3 cut(s)	57, 82, 288
Sau96I	GGNCC	2 cut(s)	45, 138
ScrFI	CCNGG	3 cut(s)	75, 181, 384
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	8 cut(s)	37, 56, 70, 212, 276, 300, 351, 403
SfaNI	GCATC	1 cut(s)	203
SfcI	CTRYAG	1 cut(s)	63
SfoI	GGCGCC	1 cut(s)	307
Sfr274I	CTCGAG	1 cut(s)	211
SinI	GGWCC	1 cut(s)	45
SlaI	CTCGAG	1 cut(s)	211
SmlI	CTYRAG	2 cut(s)	211, 344
SmoI	CTYRAG	2 cut(s)	211, 344
SsiI	CCGC	5 cut(s)	28, 222, 236, 255, 309
SspDI	GGCGCC	1 cut(s)	305
StyD4I	CCNGG	3 cut(s)	73, 179, 382
TaaI	ACNGT	1 cut(s)	261
TaiI	ACGT	3 cut(s)	56, 276, 403
TaqI	TCGA	1 cut(s)	212
TauI	GCSGC	3 cut(s)	31, 238, 311
TscAI	CASTG	1 cut(s)	44
TspRI	CASTG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	45
XhoI	CTCGAG	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.