Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006711

Physical Location & Seq

Genomic Coordinates Reverse (-)

56352162 .. 56355613

Gene Structure 3452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG364600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGTCTAATCCTCCCAACTCCTTCTTCTTCACGCTCACGCTCACACTCACACTCCTCCTCATCGCCACCCGGGCCCACCCACCAGAACAACCCGAACCCGACACTCCCGTCACCCGCTTCCAGAACTACCTCCGGATCAAAACGGCCCACCCGAGCCCGGACTACTACGCCGCCGTCTCTTACCTCAAAGCCCAGGCGGAGTCCATCGGCCTCCACTCCCGCACCCTCCACTTCGCCCCCGACAAGCCCCTCCTCCTCCTCACCTGGCCCGGCTCCGACCCGACCCTCCCTTCCCTCCTCCTCAACTCCCACCTCGACTCCGTCCCCGCCGAGCCCTCCAAGTGGGCCCACCCGCCCTTCTCGGCCCACCGCACCCCCGAAGGCCACATCTTCGCCCGCGGCGCCCAGGACGACAAGTGCATCGCCATCCAGTACCTCGAGGCCATCCGCAACCTCAAAGCCGCAGGCTTCAACCCAATCCGCACCGTCCACGTGTCCTGCGTCCCCGAGGAGGAGATCGGCGGCCTCGACGGCGCCGCCAAGTTCGCCGTCTCTGACGAGTTCAAGCAACTGAGGGTCGGGTTTGTTTTGGACGAGGGTCAGGCCAACCCCGGCGACGAGATTCGGGTCTTTTACGCTGATCGGACGCCGTGGAACTTGATCGTCAAGGCGAAGGGGATGCCCGGCCATGGTTCTAGAATGTTCGACAATAGTGCCATGGAGAATCTGATGAAGAGCGTTGAGCTTATGGCGAGGTTCAGGGAGGCTCAGTTCGATGAGGTCAAGGCCGGGAATGCTGCTAATTCGGAGGTCATTTCGGTCAATCCGGTTTATTTCAAATCCGGGATTGTTTCCGGCGATGTGAGAGTCATGTGCTTCTTGTTGTGTTTGGTGTTTGAAACCTTTTTTTTCATCACAAAGACAAAGGCGTTTGATATATTGTTGGTGTATTTAGGGATATGCGATGAATATGCAACCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004046 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0016787 GO:0016810 GO:0016811 GO:0031982 GO:0042802 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0070062 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

327

Amino Acids

36.35

Weight (kDa)

5.93

Isoelectric Point (pI)

34.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M28	PF04389	87 - 225	9.8e-10	Peptidase family M28
Peptidase_M20	PF01546	100 - 200	9.4e-20	Peptidase family M20/M25/M40

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44180 AT1G44180 AT1G44180 AT1G44820
fragaria_vesca	FvH4_2g26640 FvH4_2g26640 FvH4_2g26640
malus_domestica	MD15G1352300.v1.1
prunus_persica	Prupe.1G500800_v2.0.a1
pyrus_communis	pycom15g31580
rosa_chinensis	RchiOBHm_Chr6g0295491
rosa_laevigata	RLG00000000786 RLG00000011796 RLG00000013633 RLG00000018651 RLG00000028911
rosa_multiflora	Rmu_sc0005712.1_g000028 Rmu_sc0012290.1_g000002 Rmu_sc0012865.1_g000005
rosa_roxburghii	Rroxscaffold_7G00172430
rosa_rugosa	Rorug06G0251400
rosa_samantha	Rh6AG364600 Rh6BG373000 Rh6CG379200 Rh6DG365600
rosa_wichuraiana	Rw6G031840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AbsI	CCTCGAGG	1 cut(s)	437
AccB1I	GGYRCC	2 cut(s)	401, 533
AccII	CGCG	1 cut(s)	399
AccIII	TCCGGA	1 cut(s)	132
AclWI	GGATC	1 cut(s)	143
AcoI	YGGCCR	1 cut(s)	685
AcvI	CACGTG	1 cut(s)	493
AcyI	GRCGYC	3 cut(s)	402, 534, 647
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	4 cut(s)	157, 342, 511, 689
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	4 cut(s)	472, 565, 838, 899
AjnI	CCWGG	3 cut(s)	192, 263, 405
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AloI	GAACNNNNNNTCC	2 cut(s)	755, 787
AluBI	AGCT	1 cut(s)	745
AluI	AGCT	1 cut(s)	745
Alw26I	GTCTC	2 cut(s)	181, 556
AlwI	GGATC	1 cut(s)	143
Ama87I	CYCGRG	4 cut(s)	69, 151, 437, 506
Aor13HI	TCCGGA	1 cut(s)	132
ApaI	GGGCCC	2 cut(s)	76, 349
ApeKI	GCWGC	1 cut(s)	797
AspLEI	GCGC	2 cut(s)	404, 536
AspS9I	GGNCC	7 cut(s)	72, 73, 145, 267, 345, 346, 364
AsuC2I	CCSGG	8 cut(s)	70, 71, 158, 270, 612, 684, 790, 844
AsuHPI	GGTGA	2 cut(s)	103, 253
AvaI	CYCGRG	4 cut(s)	69, 151, 437, 506
BaeGI	GKGCMC	2 cut(s)	76, 349
BanI	GGYRCC	2 cut(s)	401, 533
BanII	GRGCYC	4 cut(s)	76, 158, 336, 349
BbrPI	CACGTG	1 cut(s)	493
BbvI	GCAGC	1 cut(s)	784
BccI	CCATC	3 cut(s)	212, 434, 452
BceAI	ACGGC	5 cut(s)	158, 159, 533, 547, 634
BcgI	CGANNNNNNTGC	5 cut(s)	661, 695, 695, 729, 953
BciT130I	CCWGG	3 cut(s)	194, 265, 407
BcnI	CCSGG	8 cut(s)	70, 71, 158, 270, 612, 684, 790, 844
BcoDI	GTCTC	2 cut(s)	181, 556
BfaI	CTAG	1 cut(s)	696
BfoI	RGCGCY	2 cut(s)	405, 537
BglI	GCCNNNNNGGC	2 cut(s)	71, 531
BisI	GCNGC	6 cut(s)	171, 400, 462, 523, 537, 798
BlsI	GCNGC	6 cut(s)	172, 401, 463, 524, 538, 799
BmeT110I	CYCGRG	4 cut(s)	69, 151, 437, 506
BmgT120I	GGNCC	7 cut(s)	72, 73, 145, 267, 345, 346, 364
BmiI	GGNNCC	5 cut(s)	74, 274, 347, 403, 535
BmsI	GCATC	2 cut(s)	429, 669
BoxI	GACNNNNGTC	1 cut(s)	597
BpuMI	CCSGG	8 cut(s)	70, 71, 158, 270, 612, 684, 790, 844
BsaAI	YACGTR	1 cut(s)	493
BsaHI	GRCGYC	3 cut(s)	402, 534, 647
BsaJI	CCNNGG	9 cut(s)	69, 192, 397, 405, 507, 610, 650, 688, 717
BsaWI	WCCGGW	2 cut(s)	132, 826
BsaXI	ACNNNNNCTCC	6 cut(s)	36, 66, 302, 332, 755, 785
Bsc4I	CCNNNNNNNGG	4 cut(s)	157, 342, 511, 689
Bse1I	ACTGG	1 cut(s)	430
BseAI	TCCGGA	1 cut(s)	132
BseBI	CCWGG	3 cut(s)	194, 265, 407
BseDI	CCNNGG	9 cut(s)	69, 192, 397, 405, 507, 610, 650, 688, 717
BseGI	GGATG	3 cut(s)	426, 444, 684
BseLI	CCNNNNNNNGG	4 cut(s)	157, 342, 511, 689
BseMII	CTCAG	2 cut(s)	563, 782
BseNI	ACTGG	1 cut(s)	430
BseRI	GAGGAG	9 cut(s)	44, 47, 242, 245, 248, 287, 290, 524, 527
BseSI	GKGCMC	2 cut(s)	76, 349
BseXI	GCAGC	1 cut(s)	784
Bsh1236I	CGCG	1 cut(s)	399
BshNI	GGYRCC	2 cut(s)	401, 533
BsiHKCI	CYCGRG	4 cut(s)	69, 151, 437, 506
BslFI	GGGAC	2 cut(s)	308, 488
BslI	CCNNNNNNNGG	4 cut(s)	157, 342, 511, 689
BsmAI	GTCTC	2 cut(s)	181, 556
BsmBI	CGTCTC	2 cut(s)	181, 556
BsmFI	GGGAC	2 cut(s)	308, 488
BsmI	GAATGC	1 cut(s)	799
BsoBI	CYCGRG	4 cut(s)	69, 151, 437, 506
Bsp120I	GGGCCC	2 cut(s)	72, 345
Bsp1286I	GDGCHC	4 cut(s)	76, 158, 336, 349
Bsp13I	TCCGGA	1 cut(s)	132
Bsp143I	GATC	4 cut(s)	135, 516, 640, 660
Bsp19I	CCATGG	2 cut(s)	688, 717
BspCNI	CTCAG	2 cut(s)	564, 781
BspEI	TCCGGA	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	399
BspLI	GGNNCC	5 cut(s)	74, 274, 347, 403, 535
BspPI	GGATC	1 cut(s)	143
BspQI	GCTCTTC	1 cut(s)	728
BspT107I	GGYRCC	2 cut(s)	401, 533
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	9 cut(s)	69, 192, 397, 405, 507, 610, 650, 688, 717
BssMI	GATC	4 cut(s)	135, 516, 640, 660
BssNI	GRCGYC	3 cut(s)	402, 534, 647
BssT1I	CCWWGG	2 cut(s)	688, 717
Bst2UI	CCWGG	3 cut(s)	194, 265, 407
Bst4CI	ACNGT	1 cut(s)	487
Bst6I	CTCTTC	1 cut(s)	728
BstACI	GRCGYC	3 cut(s)	402, 534, 647
BstBAI	YACGTR	1 cut(s)	493
BstC8I	GCNNGC	2 cut(s)	397, 466
BstDEI	CTNAG	2 cut(s)	572, 768
BstDSI	CCRYGG	4 cut(s)	397, 650, 688, 717
BstF5I	GGATG	3 cut(s)	426, 444, 684
BstFNI	CGCG	1 cut(s)	399
BstH2I	RGCGCY	2 cut(s)	405, 537
BstHHI	GCGC	2 cut(s)	404, 536
BstKTI	GATC	4 cut(s)	138, 519, 643, 663
BstMAI	GTCTC	2 cut(s)	181, 556
BstMBI	GATC	4 cut(s)	135, 516, 640, 660
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 401, 531, 545, 794
BstNI	CCWGG	3 cut(s)	194, 265, 407
BstPAI	GACNNNNGTC	1 cut(s)	597
BstSLI	GKGCMC	2 cut(s)	76, 349
BstUI	CGCG	1 cut(s)	399
BstV1I	GCAGC	1 cut(s)	784
BtgI	CCRYGG	4 cut(s)	397, 650, 688, 717
BtgZI	GCGATG	4 cut(s)	46, 406, 873, 978
BtsCI	GGATG	3 cut(s)	426, 444, 684
Cac8I	GCNNGC	2 cut(s)	397, 466
CfoI	GCGC	2 cut(s)	404, 536
Cfr13I	GGNCC	7 cut(s)	72, 73, 145, 267, 345, 346, 364
Cfr42I	CCGCGG	1 cut(s)	400
Cfr9I	CCCGGG	1 cut(s)	69
CseI	GACGC	2 cut(s)	490, 655
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	3 cut(s)	689, 718, 871
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	2 cut(s)	572, 768
DinI	GGCGCC	2 cut(s)	403, 535
DpnI	GATC	4 cut(s)	137, 518, 642, 662
DpnII	GATC	4 cut(s)	135, 516, 640, 660
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
EaeI	YGGCCR	1 cut(s)	685
Eam1104I	CTCTTC	1 cut(s)	728
EarI	CTCTTC	1 cut(s)	728
EciI	GGCGGA	1 cut(s)	212
Eco130I	CCWWGG	2 cut(s)	688, 717
Eco24I	GRGCYC	4 cut(s)	76, 158, 336, 349
Eco72I	CACGTG	1 cut(s)	493
Eco88I	CYCGRG	4 cut(s)	69, 151, 437, 506
EcoRII	CCWGG	3 cut(s)	192, 263, 405
EcoT14I	CCWWGG	2 cut(s)	688, 717
EcoT38I	GRGCYC	4 cut(s)	76, 158, 336, 349
EgeI	GGCGCC	2 cut(s)	403, 535
EheI	GGCGCC	2 cut(s)	403, 535
ErhI	CCWWGG	2 cut(s)	688, 717
Esp3I	CGTCTC	2 cut(s)	181, 556
FaeI	CATG	3 cut(s)	692, 721, 874
FaiI	YATR	7 cut(s)	690, 719, 749, 872, 938, 961, 972
FaqI	GGGAC	2 cut(s)	308, 488
FatI	CATG	3 cut(s)	688, 717, 870
FauI	CCCGC	5 cut(s)	122, 227, 334, 360, 404
Fnu4HI	GCNGC	6 cut(s)	171, 400, 462, 523, 537, 798
FokI	GGATG	3 cut(s)	413, 431, 691
FriOI	GRGCYC	4 cut(s)	76, 158, 336, 349
Fsp4HI	GCNGC	6 cut(s)	171, 400, 462, 523, 537, 798
FspBI	CTAG	1 cut(s)	696
GlaI	GCGC	2 cut(s)	403, 535
GluI	GCNGC	6 cut(s)	171, 400, 462, 523, 537, 798
HaeII	RGCGCY	2 cut(s)	405, 537
HgaI	GACGC	2 cut(s)	490, 655
HhaI	GCGC	2 cut(s)	404, 536
Hin1I	GRCGYC	3 cut(s)	402, 534, 647
Hin1II	CATG	3 cut(s)	692, 721, 874
Hin6I	GCGC	2 cut(s)	402, 534
HinP1I	GCGC	2 cut(s)	402, 534
HinfI	GANTC	5 cut(s)	200, 317, 622, 724, 867
HphI	GGTGA	2 cut(s)	103, 253
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	6 cut(s)	277, 556, 645, 729, 808, 983
Hpy188III	TCNNGA	3 cut(s)	121, 133, 696
Hpy8I	GTNNAC	1 cut(s)	490
Hpy99I	CGWCG	2 cut(s)	533, 620
HpyAV	CCTTC	5 cut(s)	31, 300, 367, 374, 667
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	2 cut(s)	420, 974
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 401, 531, 545, 794
HpyF3I	CTNAG	2 cut(s)	572, 768
HpySE526I	ACGT	1 cut(s)	492
Hsp92I	GRCGYC	3 cut(s)	402, 534, 647
Hsp92II	CATG	3 cut(s)	692, 721, 874
HspAI	GCGC	2 cut(s)	402, 534
KasI	GGCGCC	2 cut(s)	401, 533
Kpn2I	TCCGGA	1 cut(s)	132
KspI	CCGCGG	1 cut(s)	400
Kzo9I	GATC	4 cut(s)	135, 516, 640, 660
LguI	GCTCTTC	1 cut(s)	728
LmnI	GCTCC	1 cut(s)	278
Lsp1109I	GCAGC	1 cut(s)	784
LweI	GCATC	2 cut(s)	429, 669
MaeI	CTAG	1 cut(s)	696
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	4 cut(s)	137, 518, 642, 662
MboI	GATC	4 cut(s)	135, 516, 640, 660
MboII	GAAGA	4 cut(s)	16, 19, 382, 745
MhlI	GDGCHC	4 cut(s)	76, 158, 336, 349
MluCI	AATT	1 cut(s)	802
Mly113I	GGCGCC	2 cut(s)	402, 534
MlyI	GAGTC	3 cut(s)	209, 311, 876
MmeI	TCCRAC	1 cut(s)	300
MroI	TCCGGA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	799
MvaI	CCWGG	3 cut(s)	194, 265, 407
MvnI	CGCG	1 cut(s)	399
MwoI	GCNNNNNNNGC	5 cut(s)	71, 401, 531, 545, 794
NarI	GGCGCC	2 cut(s)	402, 534
NciI	CCSGG	8 cut(s)	70, 71, 158, 270, 612, 684, 790, 844
NcoI	CCATGG	2 cut(s)	688, 717
NdeII	GATC	4 cut(s)	135, 516, 640, 660
NlaIII	CATG	3 cut(s)	692, 721, 874
NlaIV	GGNNCC	5 cut(s)	74, 274, 347, 403, 535
NmeAIII	GCCGAG	2 cut(s)	341, 355
NmuCI	GTSAC	1 cut(s)	109
PaeR7I	CTCGAG	1 cut(s)	437
PciSI	GCTCTTC	1 cut(s)	728
PcsI	WCGNNNNNNNCGW	3 cut(s)	149, 498, 525
PctI	GAATGC	1 cut(s)	799
PfeI	GAWTC	2 cut(s)	622, 724
PflFI	GACNNNGTC	1 cut(s)	320
PfoI	TCCNGGA	1 cut(s)	842
PkrI	GCNGC	6 cut(s)	172, 401, 463, 524, 538, 799
PleI	GAGTC	3 cut(s)	208, 311, 875
PluTI	GGCGCC	2 cut(s)	405, 537
PmaCI	CACGTG	1 cut(s)	493
PmlI	CACGTG	1 cut(s)	493
PpsI	GAGTC	3 cut(s)	208, 311, 875
Ppu21I	YACGTR	1 cut(s)	493
PshAI	GACNNNNGTC	1 cut(s)	597
Psp6I	CCWGG	3 cut(s)	192, 263, 405
PspCI	CACGTG	1 cut(s)	493
PspGI	CCWGG	3 cut(s)	192, 263, 405
PspN4I	GGNNCC	5 cut(s)	74, 274, 347, 403, 535
PspOMI	GGGCCC	2 cut(s)	72, 345
PspPI	GGNCC	7 cut(s)	72, 73, 145, 267, 345, 346, 364
PspXI	VCTCGAGB	1 cut(s)	437
PsyI	GACNNNGTC	1 cut(s)	320
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
SacII	CCGCGG	1 cut(s)	400
SapI	GCTCTTC	1 cut(s)	728
SatI	GCNGC	6 cut(s)	171, 400, 462, 523, 537, 798
Sau3AI	GATC	4 cut(s)	135, 516, 640, 660
Sau96I	GGNCC	7 cut(s)	72, 73, 145, 267, 345, 346, 364
SchI	GAGTC	3 cut(s)	209, 311, 876
SduI	GDGCHC	4 cut(s)	76, 158, 336, 349
SfaNI	GCATC	2 cut(s)	429, 669
SfoI	GGCGCC	2 cut(s)	403, 535
Sfr274I	CTCGAG	1 cut(s)	437
Sfr303I	CCGCGG	1 cut(s)	400
SgrBI	CCGCGG	1 cut(s)	400
SlaI	CTCGAG	1 cut(s)	437
SmaI	CCCGGG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	1 cut(s)	802
SspDI	GGCGCC	2 cut(s)	401, 533
SspMI	CTAG	1 cut(s)	696
StyI	CCWWGG	2 cut(s)	688, 717
TaaI	ACNGT	1 cut(s)	487
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	5 cut(s)	315, 438, 528, 705, 774
TaqII	GACCGA	1 cut(s)	808
TasI	AATT	1 cut(s)	802
TauI	GCSGC	5 cut(s)	173, 402, 464, 525, 539
TfiI	GAWTC	2 cut(s)	622, 724
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	1 cut(s)	797
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	3 cut(s)	746, 901, 981
TspGWI	ACGGA	1 cut(s)	310
TspMI	CCCGGG	1 cut(s)	69
Tth111I	GACNNNGTC	1 cut(s)	320
XbaI	TCTAGA	1 cut(s)	695
XhoI	CTCGAG	1 cut(s)	437
XmaI	CCCGGG	1 cut(s)	69
XspI	CTAG	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.