Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012865.1

Orthogroup ID

OG0006711

Physical Location & Seq

Genomic Coordinates Forward (+)

37110 .. 38040

Gene Structure 931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012865.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ctggcccagctccaacccgacccccccttccctcctcctcaactcccactcgactccttccccgccgagccctccaagtgggcccaccctcccttctcggcccaccgcacccccgaaggccacatctttgcttggggcgcccaggacgacaagtgcatcgtcatccagtacctcgaggccatctgcaatcccaaacccacaggcttcaacccaatctgcatcgtccacgtgtcctacatctctaacgaggagatcggcgacctcgacggcgcctccatgttcaccatctctgacgagttcaatgaactgaaggtcgggtttgttttggacgagggtcaggccagccctggtgatgagattctggtcttttacgctgatcggacgccgtggaatttgatcgtcaaggcgaaggggacaccaaaatccaggtgggtctggtcggaaattcagtccaggaataacaatatcatcaggctctttggttattattacttgaggaggaggttcaaggtctgctgcaaagctcaagaatcagataacaaaagcaatggcaagctcttcaatttcgctatttggtttcgtttctggaaggtacttattggctatgaaaggtggaaggagggctcggcggggacggagtcgaggtgggagttgaggaggagggaagggaaggtcgggtccgagcctggccaggtgaggggacggcagatcgaagcatctgggagagagagagagacagatcggggagagagagagagagagagagaggaaatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004046 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0016787 GO:0016810 GO:0016811 GO:0031982 GO:0042802 GO:0043226 GO:0043227 GO:0043230 GO:0044421 GO:0070062 GO:1903561

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01210 ko01230 map00220 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

M20_dimer Peptidase_M20 Peptidase_M28

Protein Analysis

258

Amino Acids

29.78

Weight (kDa)

6.53

Isoelectric Point (pI)

54.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44180 AT1G44180 AT1G44180 AT1G44820
fragaria_vesca	FvH4_2g26640 FvH4_2g26640 FvH4_2g26640
malus_domestica	MD15G1352300.v1.1
prunus_persica	Prupe.1G500800_v2.0.a1
pyrus_communis	pycom15g31580
rosa_chinensis	RchiOBHm_Chr6g0295491
rosa_laevigata	RLG00000000786 RLG00000011796 RLG00000013633 RLG00000018651 RLG00000028911
rosa_multiflora	Rmu_sc0005712.1_g000028 Rmu_sc0012290.1_g000002 Rmu_sc0012865.1_g000005
rosa_roxburghii	Rroxscaffold_7G00172430
rosa_rugosa	Rorug06G0251400
rosa_samantha	Rh6AG364600 Rh6BG373000 Rh6CG379200 Rh6DG365600
rosa_wichuraiana	Rw6G031840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	173
AccB1I	GGYRCC	2 cut(s)	137, 269
AciI	CCGC	3 cut(s)	63, 106, 629
AcoI	YGGCCR	1 cut(s)	688
AcsI	RAATTY	2 cut(s)	391, 444
AcuI	CTGAAG	1 cut(s)	329
AcvI	CACGTG	1 cut(s)	229
AcyI	GRCGYC	3 cut(s)	138, 270, 383
AfaI	GTAC	2 cut(s)	170, 594
AfiI	CCNNNNNNNGG	2 cut(s)	78, 697
AflIII	ACRYGT	1 cut(s)	228
AgsI	TTSAA	4 cut(s)	208, 301, 508, 562
AjnI	CCWGG	6 cut(s)	141, 346, 425, 452, 685, 690
AluBI	AGCT	3 cut(s)	10, 524, 556
AluI	AGCT	3 cut(s)	10, 524, 556
Alw26I	GTCTC	1 cut(s)	728
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	7 cut(s)	3, 81, 99, 118, 177, 339, 688
ApaI	GGGCCC	1 cut(s)	85
ApeKI	GCWGC	1 cut(s)	516
ApoI	RAATTY	2 cut(s)	391, 444
AspLEI	GCGC	2 cut(s)	140, 272
AspS9I	GGNCC	5 cut(s)	4, 81, 82, 100, 678
AsuHPI	GGTGA	3 cut(s)	274, 362, 706
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	678
BaeGI	GKGCMC	1 cut(s)	85
BalI	TGGCCA	1 cut(s)	690
BanI	GGYRCC	2 cut(s)	137, 269
BanII	GRGCYC	3 cut(s)	72, 85, 626
BbrPI	CACGTG	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	503
BccI	CCATC	2 cut(s)	188, 293
BceAI	ACGGC	3 cut(s)	283, 370, 719
BciT130I	CCWGG	6 cut(s)	143, 348, 427, 454, 687, 692
BcoDI	GTCTC	1 cut(s)	728
BfoI	RGCGCY	2 cut(s)	141, 273
BisI	GCNGC	1 cut(s)	517
BlsI	GCNGC	1 cut(s)	518
Bme1390I	CCNGG	6 cut(s)	143, 348, 427, 454, 687, 692
Bme18I	GGWCC	1 cut(s)	678
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	5 cut(s)	4, 81, 82, 100, 678
BmiI	GGNNCC	4 cut(s)	83, 139, 271, 679
BmrFI	CCNGG	6 cut(s)	143, 348, 427, 454, 687, 692
BmsI	GCATC	3 cut(s)	165, 228, 725
BoxI	GACNNNNGTC	1 cut(s)	333
BpuEI	CTTGAG	2 cut(s)	510, 514
BsaAI	YACGTR	1 cut(s)	229
BsaHI	GRCGYC	3 cut(s)	138, 270, 383
BsaJI	CCNNGG	3 cut(s)	141, 346, 386
BsaXI	ACNNNNNCTCC	4 cut(s)	257, 287, 629, 659
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 697
Bse1I	ACTGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	553
BseBI	CCWGG	6 cut(s)	143, 348, 427, 454, 687, 692
BseDI	CCNNGG	3 cut(s)	141, 346, 386
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	2 cut(s)	78, 697
BseMI	GCAATG	1 cut(s)	553
BseNI	ACTGG	1 cut(s)	166
BseRI	GAGGAG	7 cut(s)	24, 27, 263, 511, 514, 670, 673
BseSI	GKGCMC	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	503
BseYI	CCCAGC	1 cut(s)	6
BshFI	GGCC	7 cut(s)	5, 83, 101, 120, 179, 341, 690
BshNI	GGYRCC	2 cut(s)	137, 269
BsiHKCI	CYCGRG	1 cut(s)	173
BslFI	GGGAC	3 cut(s)	427, 646, 714
BslI	CCNNNNNNNGG	2 cut(s)	78, 697
BsmAI	GTCTC	1 cut(s)	728
BsmFI	GGGAC	3 cut(s)	427, 646, 714
BsnI	GGCC	7 cut(s)	5, 83, 101, 120, 179, 341, 690
BsoBI	CYCGRG	1 cut(s)	173
Bsp120I	GGGCCC	1 cut(s)	81
Bsp1286I	GDGCHC	3 cut(s)	72, 85, 626
Bsp143I	GATC	5 cut(s)	252, 376, 396, 708, 739
BspACI	CCGC	3 cut(s)	63, 106, 629
BspANI	GGCC	7 cut(s)	5, 83, 101, 120, 179, 341, 690
BspLI	GGNNCC	4 cut(s)	83, 139, 271, 679
BspQI	GCTCTTC	1 cut(s)	563
BspT107I	GGYRCC	2 cut(s)	137, 269
BsrDI	GCAATG	1 cut(s)	553
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	3 cut(s)	141, 346, 386
BssMI	GATC	5 cut(s)	252, 376, 396, 708, 739
BssNI	GRCGYC	3 cut(s)	138, 270, 383
Bst2UI	CCWGG	6 cut(s)	143, 348, 427, 454, 687, 692
Bst6I	CTCTTC	1 cut(s)	563
BstACI	GRCGYC	3 cut(s)	138, 270, 383
BstBAI	YACGTR	1 cut(s)	229
BstC8I	GCNNGC	2 cut(s)	343, 554
BstDSI	CCRYGG	1 cut(s)	386
BstF5I	GGATG	1 cut(s)	162
BstH2I	RGCGCY	2 cut(s)	141, 273
BstHHI	GCGC	2 cut(s)	140, 272
BstKTI	GATC	5 cut(s)	255, 379, 399, 711, 742
BstMAI	GTCTC	1 cut(s)	728
BstMBI	GATC	5 cut(s)	252, 376, 396, 708, 739
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	6 cut(s)	143, 348, 427, 454, 687, 692
BstPAI	GACNNNNGTC	1 cut(s)	333
BstSCI	CCNGG	6 cut(s)	141, 346, 425, 452, 685, 690
BstSLI	GKGCMC	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	503
BsuRI	GGCC	7 cut(s)	5, 83, 101, 120, 179, 341, 690
BtgI	CCRYGG	1 cut(s)	386
BtsCI	GGATG	1 cut(s)	162
Cac8I	GCNNGC	2 cut(s)	343, 554
CfoI	GCGC	2 cut(s)	140, 272
Cfr13I	GGNCC	5 cut(s)	4, 81, 82, 100, 678
CseI	GACGC	1 cut(s)	391
Csp6I	GTAC	2 cut(s)	169, 593
CviAII	CATG	1 cut(s)	277
CviQI	GTAC	2 cut(s)	169, 593
DinI	GGCGCC	2 cut(s)	139, 271
DpnI	GATC	5 cut(s)	254, 378, 398, 710, 741
DpnII	GATC	5 cut(s)	252, 376, 396, 708, 739
EaeI	YGGCCR	1 cut(s)	688
Eam1104I	CTCTTC	1 cut(s)	563
EarI	CTCTTC	1 cut(s)	563
Eco24I	GRGCYC	3 cut(s)	72, 85, 626
Eco47I	GGWCC	1 cut(s)	678
Eco57I	CTGAAG	1 cut(s)	329
Eco72I	CACGTG	1 cut(s)	229
Eco88I	CYCGRG	1 cut(s)	173
EcoRII	CCWGG	6 cut(s)	141, 346, 425, 452, 685, 690
EcoT38I	GRGCYC	3 cut(s)	72, 85, 626
EgeI	GGCGCC	2 cut(s)	139, 271
EheI	GGCGCC	2 cut(s)	139, 271
FaeI	CATG	1 cut(s)	280
FaiI	YATR	3 cut(s)	278, 606, 775
FaqI	GGGAC	3 cut(s)	427, 646, 714
FatI	CATG	1 cut(s)	276
FauI	CCCGC	2 cut(s)	70, 622
Fnu4HI	GCNGC	1 cut(s)	517
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	3 cut(s)	72, 85, 626
Fsp4HI	GCNGC	1 cut(s)	517
GlaI	GCGC	2 cut(s)	139, 271
GluI	GCNGC	1 cut(s)	517
GsaI	CCCAGC	1 cut(s)	10
HaeII	RGCGCY	2 cut(s)	141, 273
HaeIII	GGCC	7 cut(s)	5, 83, 101, 120, 179, 341, 690
HgaI	GACGC	1 cut(s)	391
HhaI	GCGC	2 cut(s)	140, 272
Hin1I	GRCGYC	3 cut(s)	138, 270, 383
Hin1II	CATG	1 cut(s)	280
Hin6I	GCGC	2 cut(s)	138, 270
HinP1I	GCGC	2 cut(s)	138, 270
HinfI	GANTC	4 cut(s)	53, 358, 530, 638
HphI	GGTGA	3 cut(s)	274, 362, 706
Hpy166II	GTNNAC	2 cut(s)	226, 282
Hpy188I	TCNGA	5 cut(s)	292, 381, 442, 535, 682
Hpy188III	TCNNGA	2 cut(s)	527, 586
Hpy8I	GTNNAC	2 cut(s)	226, 282
Hpy99I	CGWCG	1 cut(s)	269
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	4 cut(s)	156, 186, 219, 519
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpySE526I	ACGT	1 cut(s)	228
Hsp92I	GRCGYC	3 cut(s)	138, 270, 383
Hsp92II	CATG	1 cut(s)	280
HspAI	GCGC	2 cut(s)	138, 270
KasI	GGCGCC	2 cut(s)	137, 269
Kzo9I	GATC	5 cut(s)	252, 376, 396, 708, 739
LguI	GCTCTTC	1 cut(s)	563
LmnI	GCTCC	1 cut(s)	15
Lsp1109I	GCAGC	1 cut(s)	503
LweI	GCATC	3 cut(s)	165, 228, 725
MaeII	ACGT	1 cut(s)	228
MalI	GATC	5 cut(s)	254, 378, 398, 710, 741
MboI	GATC	5 cut(s)	252, 376, 396, 708, 739
MboII	GAAGA	1 cut(s)	550
MhlI	GDGCHC	3 cut(s)	72, 85, 626
MlsI	TGGCCA	1 cut(s)	690
MluCI	AATT	3 cut(s)	391, 444, 562
MluNI	TGGCCA	1 cut(s)	690
Mly113I	GGCGCC	2 cut(s)	138, 270
MlyI	GAGTC	2 cut(s)	47, 647
MmeI	TCCRAC	2 cut(s)	37, 420
Mox20I	TGGCCA	1 cut(s)	690
MscI	TGGCCA	1 cut(s)	690
Msp20I	TGGCCA	1 cut(s)	690
MspR9I	CCNGG	6 cut(s)	143, 348, 427, 454, 687, 692
MvaI	CCWGG	6 cut(s)	143, 348, 427, 454, 687, 692
MwoI	GCNNNNNNNGC	1 cut(s)	137
NarI	GGCGCC	2 cut(s)	138, 270
NdeII	GATC	5 cut(s)	252, 376, 396, 708, 739
NlaIII	CATG	1 cut(s)	280
NlaIV	GGNNCC	4 cut(s)	83, 139, 271, 679
NmeAIII	GCCGAG	3 cut(s)	77, 91, 605
PaeR7I	CTCGAG	1 cut(s)	173
PciSI	GCTCTTC	1 cut(s)	563
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	358, 530
PflFI	GACNNNGTC	1 cut(s)	637
PfoI	TCCNGGA	1 cut(s)	452
PkrI	GCNGC	1 cut(s)	518
PleI	GAGTC	2 cut(s)	47, 646
PluTI	GGCGCC	2 cut(s)	141, 273
PmaCI	CACGTG	1 cut(s)	229
PmlI	CACGTG	1 cut(s)	229
PpsI	GAGTC	2 cut(s)	47, 646
Ppu21I	YACGTR	1 cut(s)	229
PshAI	GACNNNNGTC	1 cut(s)	333
Psp6I	CCWGG	6 cut(s)	141, 346, 425, 452, 685, 690
PspCI	CACGTG	1 cut(s)	229
PspFI	CCCAGC	1 cut(s)	6
PspGI	CCWGG	6 cut(s)	141, 346, 425, 452, 685, 690
PspN4I	GGNNCC	4 cut(s)	83, 139, 271, 679
PspOMI	GGGCCC	1 cut(s)	81
PspPI	GGNCC	5 cut(s)	4, 81, 82, 100, 678
PspXI	VCTCGAGB	1 cut(s)	173
PsyI	GACNNNGTC	1 cut(s)	637
RsaI	GTAC	2 cut(s)	170, 594
RsaNI	GTAC	2 cut(s)	169, 593
SapI	GCTCTTC	1 cut(s)	563
SatI	GCNGC	1 cut(s)	517
Sau3AI	GATC	5 cut(s)	252, 376, 396, 708, 739
Sau96I	GGNCC	5 cut(s)	4, 81, 82, 100, 678
SchI	GAGTC	2 cut(s)	47, 647
ScrFI	CCNGG	6 cut(s)	143, 348, 427, 454, 687, 692
SduI	GDGCHC	3 cut(s)	72, 85, 626
SfaNI	GCATC	3 cut(s)	165, 228, 725
SfoI	GGCGCC	2 cut(s)	139, 271
Sfr274I	CTCGAG	1 cut(s)	173
SinI	GGWCC	1 cut(s)	678
SlaI	CTCGAG	1 cut(s)	173
SmlI	CTYRAG	3 cut(s)	173, 493, 525
SmoI	CTYRAG	3 cut(s)	173, 493, 525
Sse9I	AATT	3 cut(s)	391, 444, 562
SsiI	CCGC	3 cut(s)	63, 106, 629
SspDI	GGCGCC	2 cut(s)	137, 269
StyD4I	CCNGG	6 cut(s)	141, 346, 425, 452, 685, 690
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	5 cut(s)	51, 174, 264, 641, 711
TasI	AATT	3 cut(s)	391, 444, 562
TfiI	GAWTC	2 cut(s)	358, 530
TseI	GCWGC	1 cut(s)	516
TspDTI	ATGAA	2 cut(s)	318, 621
TspGWI	ACGGA	1 cut(s)	650
Tth111I	GACNNNGTC	1 cut(s)	637
VpaK11BI	GGWCC	1 cut(s)	678
XapI	RAATTY	2 cut(s)	391, 444
XcmI	CCANNNNNNNNNTGG	1 cut(s)	426
XhoI	CTCGAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.