Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006783

Physical Location & Seq

Genomic Coordinates Forward (+)

21595089 .. 21596309

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g27080.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCTACCGCAGACGACGTCGCAGGGGGCGGTTCATCGGCACCAAAGATAGTGTGGAACGAAGCCAAGCATAGGTTCGAGTCAGAGGACAAGAAAGCCTACATAGACTACGTTCTCAGAGAAAATGGAAAAGTGATGGACTTGGTTCACACCTATGTCCCATCCTCCAAGAGAGGCTTGGGCTTGGCCTCCCATCTCTGCGTTGCTGCCTTCAACCACGCCAAAGCCAACTCCATCTCTGTCATCCCCACCTGTTCTTACGTCTCTGACACTTTCCTCCCGAAGAACCCTTCTTGGAATTCTCTGCTGTACTCCCCTGAGACCAAGTCTAGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034212 GO:0036211 GO:0042579 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051276 GO:0061733 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_CG

Protein Analysis

113

Amino Acids

12.19

Weight (kDa)

7.79

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_CG	PF14542	28 - 101	1.9e-20	GCN5-related N-acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21770 AT1G77540
fragaria_vesca	FvH4_2g27080
malus_domestica	MD15G1347100.v1.1
prunus_persica	Prupe.1G494800_v2.0.a1
pyrus_communis	pycom15g31140
rosa_chinensis	RchiOBHm_Chr6g0295961
rosa_laevigata	RLG00000011752
rosa_multiflora	Rmu_sc0003139.1_g000011 Rmu_sc0011232.1_g000006 Rmu_sc0016143.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172020
rosa_rugosa	Rorug05G0239300 Rorug06G0218900 Rorug06G0255300 Rorug06G0255400
rosa_samantha	Rh3DG095600 Rh4DG073200 Rh6AG369100 Rh6BG376900 Rh6CG383100 Rh6DG369600
rosa_wichuraiana	Rw2G021900 Rw4G005100 Rw6G029190 Rw6G032190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	21
AccB1I	GGYRCC	1 cut(s)	40
AciI	CCGC	2 cut(s)	9, 30
AcsI	RAATTY	1 cut(s)	298
AcyI	GRCGYC	1 cut(s)	18
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	1 cut(s)	214
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
Alw26I	GTCTC	2 cut(s)	268, 314
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	4 cut(s)	130, 169, 201, 242
BcoDI	GTCTC	2 cut(s)	268, 314
BfaI	CTAG	1 cut(s)	330
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	161, 243
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMII	CTCAG	2 cut(s)	130, 309
BseXI	GCAGC	1 cut(s)	193
BshFI	GGCC	1 cut(s)	188
BshNI	GGYRCC	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	2 cut(s)	268, 314
BsmBI	CGTCTC	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	188
Bso31I	GGTCTC	1 cut(s)	314
BspACI	CCGC	2 cut(s)	9, 30
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	2 cut(s)	129, 310
BspLI	GGNNCC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	40
BspTNI	GGTCTC	1 cut(s)	314
BssNI	GRCGYC	1 cut(s)	18
BstACI	GRCGYC	1 cut(s)	18
BstDEI	CTNAG	2 cut(s)	116, 318
BstF5I	GGATG	2 cut(s)	161, 243
BstMAI	GTCTC	2 cut(s)	268, 314
BstV1I	GCAGC	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	161, 243
Csp6I	GTAC	1 cut(s)	310
CviJI	RGCY	7 cut(s)	5, 65, 98, 177, 183, 188, 227
CviKI_1	RGCY	7 cut(s)	5, 65, 98, 177, 183, 188, 227
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	2 cut(s)	116, 318
Eco31I	GGTCTC	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	298
Esp3I	CGTCTC	1 cut(s)	268
FaiI	YATR	5 cut(s)	72, 104, 156, 335, 337
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FaqI	GGGAC	1 cut(s)	143
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	2 cut(s)	148, 230
Fsp4HI	GCNGC	1 cut(s)	207
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	188
Hin1I	GRCGYC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	3 cut(s)	85, 119, 268
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	2 cut(s)	20, 23
HpyAV	CCTTC	2 cut(s)	220, 300
HpyCH4IV	ACGT	3 cut(s)	18, 111, 261
HpyF3I	CTNAG	2 cut(s)	116, 318
HpySE526I	ACGT	3 cut(s)	18, 111, 261
Hsp92I	GRCGYC	1 cut(s)	18
LpnPI	CCDG	3 cut(s)	9, 265, 330
Lsp1109I	GCAGC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	3 cut(s)	18, 111, 261
MboII	GAAGA	1 cut(s)	295
MluCI	AATT	1 cut(s)	298
MlyI	GAGTC	1 cut(s)	89
MnlI	CCTC	5 cut(s)	79, 167, 175, 199, 287
MslI	CAYNNNNRTG	1 cut(s)	153
NlaIV	GGNNCC	1 cut(s)	42
PflFI	GACNNNGTC	2 cut(s)	17, 325
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	42
PsyI	GACNNNGTC	2 cut(s)	17, 325
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	153
SatI	GCNGC	1 cut(s)	207
SchI	GAGTC	1 cut(s)	89
SetI	ASST	6 cut(s)	21, 77, 114, 155, 254, 264
SmiMI	CAYNNNNRTG	1 cut(s)	153
Sse9I	AATT	1 cut(s)	298
SsiI	CCGC	2 cut(s)	9, 30
SspMI	CTAG	1 cut(s)	330
TaiI	ACGT	3 cut(s)	21, 114, 264
TaqI	TCGA	1 cut(s)	78
TasI	AATT	1 cut(s)	298
TatI	WGTACW	1 cut(s)	309
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	1 cut(s)	24
Tth111I	GACNNNGTC	2 cut(s)	17, 325
XapI	RAATTY	1 cut(s)	298
XcmI	CCANNNNNNNNNTGG	2 cut(s)	51, 175
XspI	CTAG	1 cut(s)	330
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.