Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0006783

Physical Location & Seq

Genomic Coordinates Forward (+)

7539870 .. 7542169

Gene Structure 2300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG095600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGATTGGATCTGCATGTCAGATCTGGAATTCAAAATTGACCGGAGAGACCCTCATTGAGATTGCAGGATCGCCTCGGGGAGAGGAGGAGAAAGAATGGAAGATGGCTACAACAGACGAGGTCGCAGGATCGGCTCCAAAGATAGTGTGGAACGAAGCGAAGCAGAGGTTCGAGTCAGAGGACCAGAAAGCCTACATAGACTACGTTCTCAGAGAAAAGGGGAAAGTGATGGACTTGGTTCACACCTATGTCCCATCTTCCAAGAGAGGCTTGGGCTTGGCCTCCCATCTCTGCGTTTCCGCCTTCAACCACGCCAAAGCCAACTCCATGTCCGTCATCCCCACCTGTTCTTACATCTCTAACAGCTACTGCTGTGTTTCACCAATCCATTGGAACTCATCAGTCCCATGGACATCTCTAGAACTCTGGCATGGTGAATCATTGTGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034212 GO:0036211 GO:0042579 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051276 GO:0061733 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_CG

Protein Analysis

150

Amino Acids

16.77

Weight (kDa)

5.94

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_CG	PF14542	59 - 121	2.6e-17	GCN5-related N-acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21770 AT1G77540
fragaria_vesca	FvH4_2g27080
malus_domestica	MD15G1347100.v1.1
prunus_persica	Prupe.1G494800_v2.0.a1
pyrus_communis	pycom15g31140
rosa_chinensis	RchiOBHm_Chr6g0295961
rosa_laevigata	RLG00000011752
rosa_multiflora	Rmu_sc0003139.1_g000011 Rmu_sc0011232.1_g000006 Rmu_sc0016143.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172020
rosa_rugosa	Rorug05G0239300 Rorug06G0218900 Rorug06G0255300 Rorug06G0255400
rosa_samantha	Rh3DG095600 Rh4DG073200 Rh6AG369100 Rh6BG376900 Rh6CG383100 Rh6DG369600
rosa_wichuraiana	Rw2G021900 Rw4G005100 Rw6G029190 Rw6G032190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	300
AclWI	GGATC	3 cut(s)	16, 76, 136
AcsI	RAATTY	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	33, 307
AluBI	AGCT	1 cut(s)	366
AluI	AGCT	1 cut(s)	366
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	3 cut(s)	16, 76, 136
AlwNI	CAGNNNCTG	1 cut(s)	369
Ama87I	CYCGRG	1 cut(s)	75
AoxI	GGCC	1 cut(s)	279
ApoI	RAATTY	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	2 cut(s)	372, 446
AvaI	CYCGRG	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	181
BccI	CCATC	4 cut(s)	97, 223, 262, 294
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	419
BglII	AGATCT	1 cut(s)	21
Bme18I	GGWCC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	36, 68
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	74, 407
BsaWI	WCCGGW	1 cut(s)	41
BseDI	CCNNGG	2 cut(s)	74, 407
BseGI	GGATG	1 cut(s)	336
BseMII	CTCAG	1 cut(s)	223
BseRI	GAGGAG	2 cut(s)	98, 101
BshFI	GGCC	1 cut(s)	281
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	42
BslFI	GGGAC	2 cut(s)	236, 389
BsmAI	GTCTC	1 cut(s)	41
BsmFI	GGGAC	2 cut(s)	236, 389
BsnI	GGCC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	75
Bsp143I	GATC	4 cut(s)	8, 21, 68, 128
Bsp19I	CCATGG	1 cut(s)	407
BspACI	CCGC	1 cut(s)	300
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	3 cut(s)	16, 76, 136
BspTNI	GGTCTC	1 cut(s)	41
BssECI	CCNNGG	2 cut(s)	74, 407
BssMI	GATC	4 cut(s)	8, 21, 68, 128
BssT1I	CCWWGG	1 cut(s)	407
BstDEI	CTNAG	1 cut(s)	209
BstDSI	CCRYGG	1 cut(s)	407
BstF5I	GGATG	1 cut(s)	336
BstKTI	GATC	4 cut(s)	11, 24, 71, 131
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	4 cut(s)	8, 21, 68, 128
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	18
BstX2I	RGATCY	2 cut(s)	8, 21
BstXI	CCANNNNNNTGG	1 cut(s)	390
BstYI	RGATCY	2 cut(s)	8, 21
BsuRI	GGCC	1 cut(s)	281
BtgI	CCRYGG	1 cut(s)	407
BtsCI	GGATG	1 cut(s)	336
CaiI	CAGNNNCTG	1 cut(s)	369
Cfr13I	GGNCC	1 cut(s)	181
CviAII	CATG	4 cut(s)	15, 328, 408, 431
CviJI	RGCY	8 cut(s)	107, 134, 191, 270, 276, 281, 320, 366
CviKI_1	RGCY	8 cut(s)	107, 134, 191, 270, 276, 281, 320, 366
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	4 cut(s)	10, 23, 70, 130
DpnII	GATC	4 cut(s)	8, 21, 68, 128
EciI	GGCGGA	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	407
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	181
Eco88I	CYCGRG	1 cut(s)	75
EcoRI	GAATTC	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	407
FaeI	CATG	4 cut(s)	18, 331, 411, 434
FaiI	YATR	6 cut(s)	16, 197, 249, 329, 409, 432
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FaqI	GGGAC	2 cut(s)	236, 389
FatI	CATG	4 cut(s)	14, 327, 407, 430
FokI	GGATG	1 cut(s)	323
FspBI	CTAG	1 cut(s)	419
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	1 cut(s)	42
Hin1II	CATG	4 cut(s)	18, 331, 411, 434
HinfI	GANTC	2 cut(s)	173, 437
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	2 cut(s)	372, 446
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	3 cut(s)	21, 178, 212
Hpy188III	TCNNGA	2 cut(s)	25, 419
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	1 cut(s)	313
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	2 cut(s)	14, 65
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	4 cut(s)	18, 331, 411, 434
Kzo9I	GATC	4 cut(s)	8, 21, 68, 128
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	7 cut(s)	10, 51, 55, 111, 197, 358, 412
MaeI	CTAG	1 cut(s)	419
MaeII	ACGT	1 cut(s)	204
MalI	GATC	4 cut(s)	10, 23, 70, 130
MboI	GATC	4 cut(s)	8, 21, 68, 128
MboII	GAAGA	2 cut(s)	112, 249
MflI	RGATCY	2 cut(s)	8, 21
MluCI	AATT	2 cut(s)	28, 35
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	9 cut(s)	62, 76, 79, 84, 112, 159, 172, 260, 292
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	131
NcoI	CCATGG	1 cut(s)	407
NdeII	GATC	4 cut(s)	8, 21, 68, 128
NlaIII	CATG	4 cut(s)	18, 331, 411, 434
NlaIV	GGNNCC	1 cut(s)	135
NspI	RCATGY	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	437
PflFI	GACNNNGTC	1 cut(s)	119
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	181
PstNI	CAGNNNCTG	1 cut(s)	369
PsuI	RGATCY	2 cut(s)	8, 21
PsyI	GACNNNGTC	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	246
Sau3AI	GATC	4 cut(s)	8, 21, 68, 128
Sau96I	GGNCC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	182
SetI	ASST	6 cut(s)	123, 170, 207, 248, 347, 368
SinI	GGWCC	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse9I	AATT	2 cut(s)	28, 35
SsiI	CCGC	1 cut(s)	300
SspMI	CTAG	1 cut(s)	419
StyI	CCWWGG	1 cut(s)	407
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	1 cut(s)	171
TasI	AATT	2 cut(s)	28, 35
TfiI	GAWTC	1 cut(s)	437
TspGWI	ACGGA	1 cut(s)	322
Tth111I	GACNNNGTC	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	1 cut(s)	28
XbaI	TCTAGA	1 cut(s)	418
XceI	RCATGY	1 cut(s)	18
XcmI	CCANNNNNNNNNTGG	2 cut(s)	144, 268
XspI	CTAG	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.