Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006783

Physical Location & Seq

Genomic Coordinates Reverse (-)

41060630 .. 41063038

Gene Structure 2409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1347100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCAGCACCAGCAGCAGCGGCGGCGGGTTCATCGGAGGCAGAGGGTCCGAAGATAGTGTGGAATTCAGGGAAGCGGAGGTTCGAGACGGAGGACCATGAGGCGTACATTGAGTACGTGCTGAGGGAGAAGGGGACAGTGATGGACTTGGTCCACACCTTCGTCCCTTCTTCCAAGAGAGGCTTGGGTCTGGCTTCTCTCCTCTGCGTCGCCGCCTTCAACCACGCTCAGTCCCACTCCCTCTCCGTCATCCCCACCTGCTCCTACGTCTCTGACACTTTTCTCCCACGGAACCCATCCTGGAATTCTCATGTGTACTCAGCAGCACCCGGAGAGATGAAGTCGAGCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034212 GO:0036211 GO:0042579 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051276 GO:0061733 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_CG

Protein Analysis

118

Amino Acids

12.6

Weight (kDa)

6.5

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_CG	PF14542	28 - 102	1.3e-19	GCN5-related N-acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21770 AT1G77540
fragaria_vesca	FvH4_2g27080
malus_domestica	MD15G1347100.v1.1
prunus_persica	Prupe.1G494800_v2.0.a1
pyrus_communis	pycom15g31140
rosa_chinensis	RchiOBHm_Chr6g0295961
rosa_laevigata	RLG00000011752
rosa_multiflora	Rmu_sc0003139.1_g000011 Rmu_sc0011232.1_g000006 Rmu_sc0016143.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172020
rosa_rugosa	Rorug05G0239300 Rorug06G0218900 Rorug06G0255300 Rorug06G0255400
rosa_samantha	Rh3DG095600 Rh4DG073200 Rh6AG369100 Rh6BG376900 Rh6CG383100 Rh6DG369600
rosa_wichuraiana	Rw2G021900 Rw4G005100 Rw6G029190 Rw6G032190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	266
Acc36I	ACCTGC	1 cut(s)	266
AciI	CCGC	5 cut(s)	20, 23, 26, 76, 213
AcsI	RAATTY	2 cut(s)	64, 304
AfaI	GTAC	3 cut(s)	107, 116, 317
AgsI	TTSAA	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	299
Alw26I	GTCTC	2 cut(s)	80, 274
ApeKI	GCWGC	4 cut(s)	5, 14, 17, 323
ApoI	RAATTY	2 cut(s)	64, 304
AspS9I	GGNCC	3 cut(s)	47, 94, 151
AsuC2I	CCSGG	1 cut(s)	330
AvaII	GGWCC	3 cut(s)	47, 94, 151
BbvCI	CCTCAGC	1 cut(s)	122
BbvI	GCAGC	4 cut(s)	17, 26, 29, 335
BccI	CCATC	2 cut(s)	136, 304
BciT130I	CCWGG	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	80, 274
BfuAI	ACCTGC	1 cut(s)	266
BisI	GCNGC	7 cut(s)	6, 15, 18, 21, 24, 213, 324
BlsI	GCNGC	7 cut(s)	7, 16, 19, 22, 25, 214, 325
Bme1390I	CCNGG	2 cut(s)	301, 330
Bme18I	GGWCC	3 cut(s)	47, 94, 151
BmgT120I	GGNCC	3 cut(s)	47, 94, 151
BmiI	GGNNCC	2 cut(s)	48, 293
BmrFI	CCNGG	2 cut(s)	301, 330
Bpu10I	CCTNAGC	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	330
BsaAI	YACGTR	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	287
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
BseBI	CCWGG	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	2 cut(s)	249, 296
BseMII	CTCAG	3 cut(s)	113, 242, 333
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	4 cut(s)	17, 26, 29, 335
BsiSI	CCGG	1 cut(s)	330
BslFI	GGGAC	3 cut(s)	148, 149, 217
BsmAI	GTCTC	2 cut(s)	80, 274
BsmBI	CGTCTC	2 cut(s)	80, 274
BsmFI	GGGAC	3 cut(s)	148, 149, 217
BspACI	CCGC	5 cut(s)	20, 23, 26, 76, 213
BspCNI	CTCAG	3 cut(s)	114, 241, 332
BspLI	GGNNCC	2 cut(s)	48, 293
BspMI	ACCTGC	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	301
Bst4CI	ACNGT	1 cut(s)	139
BstBAI	YACGTR	1 cut(s)	118
BstDEI	CTNAG	3 cut(s)	122, 228, 319
BstDSI	CCRYGG	1 cut(s)	287
BstF5I	GGATG	2 cut(s)	249, 296
BstMAI	GTCTC	2 cut(s)	80, 274
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 14, 20, 23
BstNI	CCWGG	1 cut(s)	301
BstSCI	CCNGG	2 cut(s)	299, 328
BstV1I	GCAGC	4 cut(s)	17, 26, 29, 335
BtgI	CCRYGG	1 cut(s)	287
BtsCI	GGATG	2 cut(s)	249, 296
BtsIMutI	CAGTG	1 cut(s)	144
BveI	ACCTGC	1 cut(s)	266
Cfr13I	GGNCC	3 cut(s)	47, 94, 151
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	3 cut(s)	106, 115, 316
CviAII	CATG	2 cut(s)	98, 311
CviJI	RGCY	2 cut(s)	183, 194
CviKI_1	RGCY	2 cut(s)	183, 194
CviQI	GTAC	3 cut(s)	106, 115, 316
DdeI	CTNAG	3 cut(s)	122, 228, 319
Eco47I	GGWCC	3 cut(s)	47, 94, 151
EcoRI	GAATTC	2 cut(s)	64, 304
EcoRII	CCWGG	1 cut(s)	299
Esp3I	CGTCTC	2 cut(s)	80, 274
FaeI	CATG	2 cut(s)	101, 314
FaiI	YATR	2 cut(s)	99, 312
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	3 cut(s)	148, 149, 217
FatI	CATG	2 cut(s)	97, 310
FauI	CCCGC	1 cut(s)	19
Fnu4HI	GCNGC	7 cut(s)	6, 15, 18, 21, 24, 213, 324
FokI	GGATG	2 cut(s)	236, 283
Fsp4HI	GCNGC	7 cut(s)	6, 15, 18, 21, 24, 213, 324
GluI	GCNGC	7 cut(s)	6, 15, 18, 21, 24, 213, 324
HapII	CCGG	1 cut(s)	330
HgaI	GACGC	1 cut(s)	196
Hin1II	CATG	2 cut(s)	101, 314
HpaII	CCGG	1 cut(s)	330
Hpy166II	GTNNAC	2 cut(s)	154, 316
Hpy188I	TCNGA	3 cut(s)	37, 51, 274
Hpy188III	TCNNGA	1 cut(s)	85
Hpy8I	GTNNAC	2 cut(s)	154, 316
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	4 cut(s)	124, 169, 177, 226
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4IV	ACGT	2 cut(s)	117, 267
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 14, 20, 23
HpyF3I	CTNAG	3 cut(s)	122, 228, 319
HpySE526I	ACGT	2 cut(s)	117, 267
Hsp92II	CATG	2 cut(s)	101, 314
LmnI	GCTCC	1 cut(s)	266
LpnPI	CCDG	7 cut(s)	24, 54, 176, 271, 286, 313, 343
Lsp1109I	GCAGC	4 cut(s)	17, 26, 29, 335
MaeII	ACGT	2 cut(s)	117, 267
MboII	GAAGA	2 cut(s)	64, 162
MluCI	AATT	2 cut(s)	64, 304
MnlI	CCTC	9 cut(s)	31, 37, 72, 85, 94, 117, 173, 212, 251
MseI	TTAA	1 cut(s)	352
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	2 cut(s)	301, 330
MvaI	CCWGG	1 cut(s)	301
MwoI	GCNNNNNNNGC	4 cut(s)	11, 14, 20, 23
NciI	CCSGG	1 cut(s)	330
NlaIII	CATG	2 cut(s)	101, 314
NlaIV	GGNNCC	2 cut(s)	48, 293
PaqCI	CACCTGC	1 cut(s)	266
PflFI	GACNNNGTC	1 cut(s)	149
PfoI	TCCNGGA	1 cut(s)	299
PkrI	GCNGC	7 cut(s)	7, 16, 19, 22, 25, 214, 325
Ppu21I	YACGTR	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	299
PspN4I	GGNNCC	2 cut(s)	48, 293
PspPI	GGNCC	3 cut(s)	47, 94, 151
PsyI	GACNNNGTC	1 cut(s)	149
RsaI	GTAC	3 cut(s)	107, 116, 317
RsaNI	GTAC	3 cut(s)	106, 115, 316
SaqAI	TTAA	1 cut(s)	352
SatI	GCNGC	7 cut(s)	6, 15, 18, 21, 24, 213, 324
Sau96I	GGNCC	3 cut(s)	47, 94, 151
ScrFI	CCNGG	2 cut(s)	301, 330
SetI	ASST	5 cut(s)	83, 120, 161, 260, 270
SinI	GGWCC	3 cut(s)	47, 94, 151
Sse9I	AATT	2 cut(s)	64, 304
SsiI	CCGC	5 cut(s)	20, 23, 26, 76, 213
StyD4I	CCNGG	2 cut(s)	299, 328
TaaI	ACNGT	1 cut(s)	139
TaiI	ACGT	2 cut(s)	120, 270
TaqI	TCGA	2 cut(s)	84, 344
TasI	AATT	2 cut(s)	64, 304
TatI	WGTACW	1 cut(s)	315
TauI	GCSGC	3 cut(s)	23, 26, 215
Tru1I	TTAA	1 cut(s)	352
Tru9I	TTAA	1 cut(s)	352
TscAI	CASTG	1 cut(s)	144
TseI	GCWGC	4 cut(s)	5, 14, 17, 323
TspDTI	ATGAA	2 cut(s)	21, 353
TspGWI	ACGGA	3 cut(s)	104, 235, 304
TspRI	CASTG	1 cut(s)	144
Tth111I	GACNNNGTC	1 cut(s)	149
VpaK11BI	GGWCC	3 cut(s)	47, 94, 151
XapI	RAATTY	2 cut(s)	64, 304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.