Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006783

Physical Location & Seq

Genomic Coordinates Forward (+)

40166783 .. 40167594

Gene Structure 812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0255400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTCCCAACCTGCTCCTGAGGTGTCCTACAGTTGTGGGTCTTGTGGTTACCCTTTGCATTTGTCATCTGCAAATCGTACTGCATCTGGTTCTGGGATAGGCTCTGACTATCAGAAATCTGTCAAGAAAGGTTTTATTTCCTTCCTTACGGTTGATCTAAGTCGGTTCACGCAGGTTGATGAGGTAAACTGTTTTCCCGTCTCTTGGGGTCGCTATCGATCAAAGACTAAGCTCCTTTGCCGCAAATGTGGAGTTCATATTGGTTATGGATATGGAGACTCATCTGTTCTTTGTGGTTTTGACTCTCCCACATTGTCTACTTCAGCTTATAGAAAGTTCACTGTGAGAATTCGAGCTTTACAGCCCTCTGAAGAGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034212 GO:0036211 GO:0042579 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051276 GO:0061733 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_CG

Protein Analysis

126

Amino Acids

13.77

Weight (kDa)

9.03

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At4g08330	PF24046	6 - 123	2.9e-45	At4g08330 beta-tent

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21770 AT1G77540
fragaria_vesca	FvH4_2g27080
malus_domestica	MD15G1347100.v1.1
prunus_persica	Prupe.1G494800_v2.0.a1
pyrus_communis	pycom15g31140
rosa_chinensis	RchiOBHm_Chr6g0295961
rosa_laevigata	RLG00000011752
rosa_multiflora	Rmu_sc0003139.1_g000011 Rmu_sc0011232.1_g000006 Rmu_sc0016143.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172020
rosa_rugosa	Rorug05G0239300 Rorug06G0218900 Rorug06G0255300 Rorug06G0255400
rosa_samantha	Rh3DG095600 Rh4DG073200 Rh6AG369100 Rh6BG376900 Rh6CG383100 Rh6DG369600
rosa_wichuraiana	Rw2G021900 Rw4G005100 Rw6G029190 Rw6G032190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	19, 163
AccI	GTMKAC	1 cut(s)	317
AciI	CCGC	1 cut(s)	241
AcsI	RAATTY	1 cut(s)	348
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	1 cut(s)	204
AluBI	AGCT	3 cut(s)	232, 326, 356
AluI	AGCT	3 cut(s)	232, 326, 356
Alw26I	GTCTC	2 cut(s)	205, 270
ApoI	RAATTY	1 cut(s)	348
AxyI	CCTNAGG	1 cut(s)	18
BcoDI	GTCTC	2 cut(s)	205, 270
BfmI	CTRYAG	1 cut(s)	28
BfuAI	ACCTGC	2 cut(s)	19, 163
BisI	GCNGC	1 cut(s)	241
BlsI	GCNGC	1 cut(s)	242
BmsI	GCATC	1 cut(s)	92
Bsa29I	ATCGAT	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse21I	CCTNAGG	1 cut(s)	18
BseCI	ATCGAT	1 cut(s)	217
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	9
BshVI	ATCGAT	1 cut(s)	217
BslI	CCNNNNNNNGG	1 cut(s)	204
BsmAI	GTCTC	2 cut(s)	205, 270
BsmBI	CGTCTC	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	154, 218
BspACI	CCGC	1 cut(s)	241
BspCNI	CTCAG	1 cut(s)	10
BspDI	ATCGAT	1 cut(s)	217
BspMI	ACCTGC	2 cut(s)	19, 163
BssMI	GATC	2 cut(s)	154, 218
Bst4CI	ACNGT	4 cut(s)	32, 151, 191, 343
Bst6I	CTCTTC	1 cut(s)	366
BstDEI	CTNAG	3 cut(s)	18, 158, 228
BstEII	GGTNACC	1 cut(s)	47
BstKTI	GATC	2 cut(s)	157, 221
BstMAI	GTCTC	2 cut(s)	205, 270
BstMBI	GATC	2 cut(s)	154, 218
BstPI	GGTNACC	1 cut(s)	47
BstSFI	CTRYAG	1 cut(s)	28
Bsu15I	ATCGAT	1 cut(s)	217
Bsu36I	CCTNAGG	1 cut(s)	18
BsuTUI	ATCGAT	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	339
BveI	ACCTGC	2 cut(s)	19, 163
ClaI	ATCGAT	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	78
CviJI	RGCY	5 cut(s)	102, 232, 326, 356, 364
CviKI_1	RGCY	5 cut(s)	102, 232, 326, 356, 364
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	3 cut(s)	18, 158, 228
DpnI	GATC	2 cut(s)	156, 220
DpnII	GATC	2 cut(s)	154, 218
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco57I	CTGAAG	1 cut(s)	306
Eco81I	CCTNAGG	1 cut(s)	18
Eco91I	GGTNACC	1 cut(s)	47
EcoO65I	GGTNACC	1 cut(s)	47
EcoRI	GAATTC	1 cut(s)	348
Esp3I	CGTCTC	1 cut(s)	205
FaiI	YATR	4 cut(s)	258, 267, 273, 330
FblI	GTMKAC	1 cut(s)	317
Fnu4HI	GCNGC	1 cut(s)	241
Fsp4HI	GCNGC	1 cut(s)	241
GluI	GCNGC	1 cut(s)	241
HinfI	GANTC	2 cut(s)	278, 302
Hpy166II	GTNNAC	4 cut(s)	168, 187, 318, 339
Hpy188I	TCNGA	3 cut(s)	106, 114, 370
Hpy188III	TCNNGA	2 cut(s)	17, 124
Hpy8I	GTNNAC	4 cut(s)	168, 187, 318, 339
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	4 cut(s)	32, 151, 191, 343
HpyCH4V	TGCA	3 cut(s)	58, 71, 83
HpyF3I	CTNAG	3 cut(s)	18, 158, 228
Kzo9I	GATC	2 cut(s)	154, 218
LmnI	GCTCC	2 cut(s)	19, 237
LpnPI	CCDG	5 cut(s)	24, 30, 72, 78, 158
LweI	GCATC	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	2 cut(s)	156, 220
MboI	GATC	2 cut(s)	154, 218
MluCI	AATT	1 cut(s)	348
MlyI	GAGTC	2 cut(s)	272, 296
MnlI	CCTC	3 cut(s)	13, 175, 376
NdeII	GATC	2 cut(s)	154, 218
PkrI	GCNGC	1 cut(s)	242
PleI	GAGTC	2 cut(s)	272, 296
PpsI	GAGTC	2 cut(s)	272, 296
PspEI	GGTNACC	1 cut(s)	47
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
SatI	GCNGC	1 cut(s)	241
Sau3AI	GATC	2 cut(s)	154, 218
SchI	GAGTC	2 cut(s)	272, 296
SetI	ASST	8 cut(s)	13, 24, 133, 177, 186, 234, 328, 358
SfaNI	GCATC	1 cut(s)	92
SfcI	CTRYAG	1 cut(s)	28
Sse9I	AATT	1 cut(s)	348
SsiI	CCGC	1 cut(s)	241
TaaI	ACNGT	4 cut(s)	32, 151, 191, 343
TaqI	TCGA	2 cut(s)	217, 352
TasI	AATT	1 cut(s)	348
TauI	GCSGC	1 cut(s)	243
TscAI	CASTG	1 cut(s)	346
TspDTI	ATGAA	1 cut(s)	245
TspRI	CASTG	1 cut(s)	346
XapI	RAATTY	1 cut(s)	348
XmiI	GTMKAC	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.