Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006783

Physical Location & Seq

Genomic Coordinates Forward (+)

56894224 .. 56895198

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG383100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCTACAACAGACGAGGTCGAAGGATCGGCTCCAAAGATAGTGTGGAACGAAGCGAAGCAGAGGTTCGAGTCAGAGGACCAGAAAGCCTACATAGACTACGTTCTCAGAGAAAAGGGGAAAGTGATGGACTTGGTTCACACCTATGTCCCATCTTCCAAGAGAGGCTTGGGCTTGGCCTCCCATCTCTGCGTTGCCGCCTTCAACCACGCCAAAGCCAACTCCATGTCCGTCATCCCCACCTGTTCTTACGTCTCTGACACTTTTCTCCCGAAGAACCCTTCATGGAATTCTCTCCTGTACTCTCCTGAGACGAAGTCTAGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034212 GO:0036211 GO:0042579 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051276 GO:0061733 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_CG

Protein Analysis

109

Amino Acids

12.11

Weight (kDa)

6.82

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_CG	PF14542	25 - 98	9.7e-21	GCN5-related N-acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21770 AT1G77540
fragaria_vesca	FvH4_2g27080
malus_domestica	MD15G1347100.v1.1
prunus_persica	Prupe.1G494800_v2.0.a1
pyrus_communis	pycom15g31140
rosa_chinensis	RchiOBHm_Chr6g0295961
rosa_laevigata	RLG00000011752
rosa_multiflora	Rmu_sc0003139.1_g000011 Rmu_sc0011232.1_g000006 Rmu_sc0016143.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172020
rosa_rugosa	Rorug05G0239300 Rorug06G0218900 Rorug06G0255300 Rorug06G0255400
rosa_samantha	Rh3DG095600 Rh4DG073200 Rh6AG369100 Rh6BG376900 Rh6CG383100 Rh6DG369600
rosa_wichuraiana	Rw2G021900 Rw4G005100 Rw6G029190 Rw6G032190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	289
AfaI	GTAC	1 cut(s)	302
AgsI	TTSAA	1 cut(s)	205
Alw26I	GTCTC	2 cut(s)	259, 305
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	177
ApoI	RAATTY	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	79
BccI	CCATC	3 cut(s)	121, 160, 192
BcoDI	GTCTC	2 cut(s)	259, 305
BfaI	CTAG	1 cut(s)	321
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	33
BseGI	GGATG	1 cut(s)	234
BseMII	CTCAG	2 cut(s)	121, 300
BshFI	GGCC	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	134
BsmAI	GTCTC	2 cut(s)	259, 305
BsmBI	CGTCTC	2 cut(s)	259, 305
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	179
Bsp143I	GATC	1 cut(s)	26
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	2 cut(s)	120, 301
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	34
BssMI	GATC	1 cut(s)	26
BstDEI	CTNAG	2 cut(s)	107, 309
BstF5I	GGATG	1 cut(s)	234
BstKTI	GATC	1 cut(s)	29
BstMAI	GTCTC	2 cut(s)	259, 305
BstMBI	GATC	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	2 cut(s)	226, 285
CviJI	RGCY	7 cut(s)	5, 32, 89, 168, 174, 179, 218
CviKI_1	RGCY	7 cut(s)	5, 32, 89, 168, 174, 179, 218
CviQI	GTAC	1 cut(s)	301
DdeI	CTNAG	2 cut(s)	107, 309
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	79
EcoRI	GAATTC	1 cut(s)	289
Esp3I	CGTCTC	2 cut(s)	259, 305
FaeI	CATG	2 cut(s)	229, 288
FaiI	YATR	6 cut(s)	95, 147, 227, 286, 326, 328
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	2 cut(s)	225, 284
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	179
Hin1II	CATG	2 cut(s)	229, 288
HinfI	GANTC	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	3 cut(s)	76, 110, 259
Hpy188III	TCNNGA	2 cut(s)	271, 308
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	3 cut(s)	17, 211, 291
HpyCH4IV	ACGT	2 cut(s)	102, 252
HpyF3I	CTNAG	2 cut(s)	107, 309
HpySE526I	ACGT	2 cut(s)	102, 252
Hsp92II	CATG	2 cut(s)	229, 288
Kzo9I	GATC	1 cut(s)	26
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	4 cut(s)	95, 256, 311, 321
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	2 cut(s)	102, 252
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MboII	GAAGA	2 cut(s)	147, 286
MluCI	AATT	1 cut(s)	289
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	5 cut(s)	10, 57, 70, 158, 190
MslI	CAYNNNNRTG	1 cut(s)	144
NdeII	GATC	1 cut(s)	26
NlaIII	CATG	2 cut(s)	229, 288
NlaIV	GGNNCC	1 cut(s)	33
PflFI	GACNNNGTC	2 cut(s)	17, 316
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	79
PsyI	GACNNNGTC	2 cut(s)	17, 316
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	144
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	26
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	80
SetI	ASST	6 cut(s)	21, 68, 105, 146, 245, 255
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	144
Sse9I	AATT	1 cut(s)	289
SsiI	CCGC	1 cut(s)	198
SspMI	CTAG	1 cut(s)	321
TaiI	ACGT	2 cut(s)	105, 255
TaqI	TCGA	2 cut(s)	21, 69
TasI	AATT	1 cut(s)	289
TatI	WGTACW	1 cut(s)	300
TauI	GCSGC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	273
TspGWI	ACGGA	1 cut(s)	220
Tth111I	GACNNNGTC	2 cut(s)	17, 316
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	289
XcmI	CCANNNNNNNNNTGG	2 cut(s)	42, 166
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.