Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006783

Physical Location & Seq

Genomic Coordinates Reverse (-)

12332670 .. 12333766

Gene Structure 1097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00172020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCTACAACAGACGACGTCGCAGGATCGGCTCCAAAGATAGTGTGGAACGAAGCGAAGCAGAGGTTCGAGTCAGAGGACCAGAAAGCCTACATAGACTACGTTCTCAGAGAAAAGGGGAAAGTGATGGACTTGGTTCACACCTACGTCCCATCTTCCAAGAGAGGCTTGGGCTTGGCCTCCCATCTCTGCGTTGCCGCCTTCAACCACGCCAAAGCCAACTCCATGTCCGTCATCCCCACCTGTTCTTACGTCTCTACTCTTGTAATTCATAGCTATTGTCATTCACAATCCACTTGGAGAAATGAGAAAGTTTTAGCTCTAAATCGATTAGATCTTTCTCATAGTCAGTTGGATGCTGTACTTGGGTTTTCTGTAAATATTGGACACTTTTCTCCCGAAGAACCCTTCATGGAATTCTCTCCTCTACTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034212 GO:0036211 GO:0042579 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051276 GO:0061733 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_CG

Protein Analysis

145

Amino Acids

16.13

Weight (kDa)

6.36

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_CG	PF14542	25 - 88	3.4e-18	GCN5-related N-acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21770 AT1G77540
fragaria_vesca	FvH4_2g27080
malus_domestica	MD15G1347100.v1.1
prunus_persica	Prupe.1G494800_v2.0.a1
pyrus_communis	pycom15g31140
rosa_chinensis	RchiOBHm_Chr6g0295961
rosa_laevigata	RLG00000011752
rosa_multiflora	Rmu_sc0003139.1_g000011 Rmu_sc0011232.1_g000006 Rmu_sc0016143.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172020
rosa_rugosa	Rorug05G0239300 Rorug06G0218900 Rorug06G0255300 Rorug06G0255400
rosa_samantha	Rh3DG095600 Rh4DG073200 Rh6AG369100 Rh6BG376900 Rh6CG383100 Rh6DG369600
rosa_wichuraiana	Rw2G021900 Rw4G005100 Rw6G029190 Rw6G032190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	21
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	1 cut(s)	34
AcsI	RAATTY	1 cut(s)	416
AcyI	GRCGYC	1 cut(s)	18
AfaI	GTAC	1 cut(s)	363
AgsI	TTSAA	1 cut(s)	205
AluBI	AGCT	2 cut(s)	276, 320
AluI	AGCT	2 cut(s)	276, 320
Alw26I	GTCTC	1 cut(s)	259
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	177
ApoI	RAATTY	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	79
BccI	CCATC	3 cut(s)	121, 160, 192
BcoDI	GTCTC	1 cut(s)	259
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	33
BmsI	GCATC	1 cut(s)	346
Bsa29I	ATCGAT	1 cut(s)	328
BsaHI	GRCGYC	1 cut(s)	18
BseCI	ATCGAT	1 cut(s)	328
BseGI	GGATG	2 cut(s)	234, 361
BseMII	CTCAG	1 cut(s)	121
BseRI	GAGGAG	1 cut(s)	414
BshFI	GGCC	1 cut(s)	179
BshVI	ATCGAT	1 cut(s)	328
BslFI	GGGAC	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	259
BsmBI	CGTCTC	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	179
Bsp143I	GATC	2 cut(s)	26, 334
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	1 cut(s)	120
BspDI	ATCGAT	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	34
BssMI	GATC	2 cut(s)	26, 334
BssNI	GRCGYC	1 cut(s)	18
BstACI	GRCGYC	1 cut(s)	18
BstDEI	CTNAG	1 cut(s)	107
BstF5I	GGATG	2 cut(s)	234, 361
BstKTI	GATC	2 cut(s)	29, 337
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	2 cut(s)	26, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
Bsu15I	ATCGAT	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	179
BsuTUI	ATCGAT	1 cut(s)	328
BtsCI	GGATG	2 cut(s)	234, 361
Cfr13I	GGNCC	1 cut(s)	79
ClaI	ATCGAT	1 cut(s)	328
Csp6I	GTAC	1 cut(s)	362
CviAII	CATG	2 cut(s)	226, 412
CviJI	RGCY	9 cut(s)	5, 32, 89, 168, 174, 179, 218, 276, 320
CviKI_1	RGCY	9 cut(s)	5, 32, 89, 168, 174, 179, 218, 276, 320
CviQI	GTAC	1 cut(s)	362
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	2 cut(s)	28, 336
DpnII	GATC	2 cut(s)	26, 334
Eco47I	GGWCC	1 cut(s)	79
EcoRI	GAATTC	1 cut(s)	416
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	2 cut(s)	229, 415
FaiI	YATR	5 cut(s)	95, 227, 273, 345, 413
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FaqI	GGGAC	1 cut(s)	134
FatI	CATG	2 cut(s)	225, 411
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	2 cut(s)	221, 368
Fsp4HI	GCNGC	1 cut(s)	198
GluI	GCNGC	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	179
Hin1I	GRCGYC	1 cut(s)	18
Hin1II	CATG	2 cut(s)	229, 415
HinfI	GANTC	1 cut(s)	71
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	76, 110
Hpy188III	TCNNGA	1 cut(s)	398
Hpy8I	GTNNAC	1 cut(s)	139
Hpy99I	CGWCG	2 cut(s)	20, 23
HpyAV	CCTTC	2 cut(s)	211, 418
HpyCH4IV	ACGT	4 cut(s)	18, 102, 147, 252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	1 cut(s)	107
HpySE526I	ACGT	4 cut(s)	18, 102, 147, 252
Hsp92I	GRCGYC	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	229, 415
Kzo9I	GATC	2 cut(s)	26, 334
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	3 cut(s)	9, 95, 256
LweI	GCATC	1 cut(s)	346
MaeII	ACGT	4 cut(s)	18, 102, 147, 252
MalI	GATC	2 cut(s)	28, 336
MboI	GATC	2 cut(s)	26, 334
MboII	GAAGA	2 cut(s)	147, 413
MflI	RGATCY	1 cut(s)	334
MluCI	AATT	2 cut(s)	267, 416
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	5 cut(s)	57, 70, 158, 190, 435
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeII	GATC	2 cut(s)	26, 334
NlaIII	CATG	2 cut(s)	229, 415
NlaIV	GGNNCC	1 cut(s)	33
PflFI	GACNNNGTC	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	334
PsyI	GACNNNGTC	1 cut(s)	17
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	2 cut(s)	26, 334
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	80
SetI	ASST	9 cut(s)	21, 68, 105, 146, 150, 245, 255, 278, 322
SfaNI	GCATC	1 cut(s)	346
SinI	GGWCC	1 cut(s)	79
Sse9I	AATT	2 cut(s)	267, 416
SsiI	CCGC	1 cut(s)	198
SspI	AATATT	1 cut(s)	382
TaiI	ACGT	4 cut(s)	21, 105, 150, 255
TaqI	TCGA	2 cut(s)	69, 328
TasI	AATT	2 cut(s)	267, 416
TatI	WGTACW	1 cut(s)	361
TauI	GCSGC	1 cut(s)	200
TspDTI	ATGAA	2 cut(s)	260, 400
TspGWI	ACGGA	1 cut(s)	220
Tth111I	GACNNNGTC	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	416
XcmI	CCANNNNNNNNNTGG	2 cut(s)	42, 166
ZraI	GACGTC	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.