Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006783

Physical Location & Seq

Genomic Coordinates Forward (+)

25346961 .. 25348503

Gene Structure 1543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0239300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGATGATGCCAAGAGTTCTGGAAATGCTAGAACTGAAACTTAATGAAACCTTTTCAATCCCTTTGCAACCTTTTCCTTTCCAATATATATTCCTTGCGGTCATTTTCTTCATTCTCTTACGCAGATGGTCCTCTTATAGAAACTCATCTGTACCACCTTCTCCACCAAAGCTACCCATCATTGGAAACCTTCACCAAGTAGGTTCGCTCCCTCATCGCTCACTTCAAACCTTATCTCAACGCCATGGGCTTGTCATGCTGCTCCATTTCGGAAGTAGGCCAGTCCTTGTCATCTCGTCGGCTGAGGCAGCCTCCCAGATCTTCAAAACCCATGACCTAATATTCTCTGACAGACCCAAGTTCATCTTTTTTGATAAGGCTGTCTACAACTCCAATGGTATTGTAACGGCCCCTTATGGCGAGTACTGGAGGCAGCTCAGAAGTATATTTGTCTTGAATCTTTTGAGCAACAAAAGGGTTCGATCTTTTCATGCTGTAAGACAAGAGGAAACAAGATTGATGATAAGCAACATACTACAGTCCTGTAGTACTCTATCATCCTCCTCATCCTCACCGGTTTTAAATCTAAGCAACATCTTTATGAAGCTTAGTAATGATGTCATATGCAGAGTTGCTATGGGGAGGAAGTGCAGCGATCTCGGAGAAGATAGAGGGAAGATGTTCATGAAGATTGCTAAAGATTTGATGGAGTTCTTCACACGTGTTAACATTGGTGACTATATTCCATGGCTTGCTTGGTTCACTCGCCTCAGTGGGTTTGACGCTGAATTGGATGACCTGGCTAAACGAGCGGATGCGTTTCTCGATATGGTTATTCAAGAGCATATTGATAAATCAAATAGTGGAATTGATGATATGAACGACAATGAAGACCAGAAGGATTTTGTGGAAGAAAATGCAGCTCATGTCCTTATTGATCGAGTTGGCATAAAGGCAATCATCCTGGTTATGTCTGAGCTTATGAGGAATCCAAGGGTGATGAAAAAATTGCAGAATGGGGTCAGGGAAGTAGTTGGAAACAAAGAGGATATAACAGAGGATGATTTGGTGGAAATGAACTACTTGAAGGCAGTGATTAAAGAAACTTTTCGCTTGCATCCTCCATGCATTTCCATTACTTGTTCCCAAGATGTCCAACCAAAATGTGAAAATAAACGGTTACAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034212 GO:0036211 GO:0042579 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051276 GO:0061733 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_CG

Protein Analysis

396

Amino Acids

45.45

Weight (kDa)

8.44

Isoelectric Point (pI)

51.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	52 - 379	6.1e-48	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21770 AT1G77540
fragaria_vesca	FvH4_2g27080
malus_domestica	MD15G1347100.v1.1
prunus_persica	Prupe.1G494800_v2.0.a1
pyrus_communis	pycom15g31140
rosa_chinensis	RchiOBHm_Chr6g0295961
rosa_laevigata	RLG00000011752
rosa_multiflora	Rmu_sc0003139.1_g000011 Rmu_sc0011232.1_g000006 Rmu_sc0016143.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172020
rosa_rugosa	Rorug05G0239300 Rorug06G0218900 Rorug06G0255300 Rorug06G0255400
rosa_samantha	Rh3DG095600 Rh4DG073200 Rh6AG369100 Rh6BG376900 Rh6CG383100 Rh6DG369600
rosa_wichuraiana	Rw2G021900 Rw4G005100 Rw6G029190 Rw6G032190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	812
AccI	GTMKAC	1 cut(s)	384
AciI	CCGC	2 cut(s)	98, 812
AcvI	CACGTG	1 cut(s)	722
AfaI	GTAC	3 cut(s)	153, 425, 550
AfiI	CCNNNNNNNGG	1 cut(s)	182
AflIII	ACRYGT	2 cut(s)	719, 721
AgeI	ACCGGT	1 cut(s)	574
AgsI	TTSAA	6 cut(s)	57, 227, 325, 457, 839, 1087
AjnI	CCWGG	2 cut(s)	798, 963
AluBI	AGCT	5 cut(s)	172, 436, 607, 923, 979
AluI	AGCT	5 cut(s)	172, 436, 607, 923, 979
AoxI	GGCC	2 cut(s)	278, 408
ApeKI	GCWGC	5 cut(s)	259, 308, 433, 651, 920
AsiGI	ACCGGT	1 cut(s)	574
Asp700I	GAANNNNTTC	2 cut(s)	680, 1107
AspS9I	GGNCC	2 cut(s)	129, 409
AsuHPI	GGTGA	4 cut(s)	185, 564, 746, 1009
AvaII	GGWCC	1 cut(s)	129
BbrPI	CACGTG	1 cut(s)	722
BbsI	GAAGAC	1 cut(s)	897
BbvCI	CCTCAGC	1 cut(s)	303
BbvI	GCAGC	5 cut(s)	246, 320, 445, 663, 932
BccI	CCATC	3 cut(s)	120, 185, 700
BceAI	ACGGC	1 cut(s)	423
BcgI	CGANNNNNNTGC	2 cut(s)	640, 674
BciT130I	CCWGG	2 cut(s)	800, 965
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	2 cut(s)	536, 544
BglII	AGATCT	1 cut(s)	318
BisI	GCNGC	5 cut(s)	260, 309, 434, 652, 921
BlsI	GCNGC	5 cut(s)	261, 310, 435, 653, 922
BmcAI	AGTACT	2 cut(s)	425, 550
Bme1390I	CCNGG	2 cut(s)	800, 965
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	129, 409
BmiI	GGNNCC	1 cut(s)	411
BmrFI	CCNGG	2 cut(s)	800, 965
BmsI	GCATC	2 cut(s)	805, 1126
BpiI	GAAGAC	1 cut(s)	897
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
BpmI	CTGGAG	1 cut(s)	448
Bpu10I	CCTNAGC	1 cut(s)	303
BsaAI	YACGTR	1 cut(s)	722
BsaJI	CCNNGG	3 cut(s)	244, 746, 992
BsaWI	WCCGGW	1 cut(s)	574
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse118I	RCCGGY	1 cut(s)	574
Bse1I	ACTGG	2 cut(s)	281, 431
BseBI	CCWGG	2 cut(s)	800, 965
BseDI	CCNNGG	3 cut(s)	244, 746, 992
BseGI	GGATG	7 cut(s)	557, 566, 799, 820, 960, 1066, 1117
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	4 cut(s)	294, 451, 784, 966
BseNI	ACTGG	2 cut(s)	281, 431
BseRI	GAGGAG	1 cut(s)	553
BseXI	GCAGC	5 cut(s)	246, 320, 445, 663, 932
BsgI	GTGCAG	1 cut(s)	670
BshFI	GGCC	2 cut(s)	280, 410
BshTI	ACCGGT	1 cut(s)	574
BsiSI	CCGG	1 cut(s)	575
BslI	CCNNNNNNNGG	1 cut(s)	182
BsnI	GGCC	2 cut(s)	280, 410
Bsp143I	GATC	4 cut(s)	318, 482, 655, 937
Bsp19I	CCATGG	2 cut(s)	244, 746
BspACI	CCGC	2 cut(s)	98, 812
BspANI	GGCC	2 cut(s)	280, 410
BspCNI	CTCAG	4 cut(s)	295, 450, 783, 967
BspHI	TCATGA	1 cut(s)	684
BspLI	GGNNCC	1 cut(s)	411
BsrBI	CCGCTC	1 cut(s)	812
BsrFI	RCCGGY	1 cut(s)	574
BsrI	ACTGG	2 cut(s)	281, 431
BssAI	RCCGGY	1 cut(s)	574
BssECI	CCNNGG	3 cut(s)	244, 746, 992
BssMI	GATC	4 cut(s)	318, 482, 655, 937
BssT1I	CCWWGG	3 cut(s)	244, 746, 992
Bst2UI	CCWGG	2 cut(s)	800, 965
Bst4CI	ACNGT	2 cut(s)	540, 1179
BstBAI	YACGTR	1 cut(s)	722
BstC8I	GCNNGC	2 cut(s)	753, 1115
BstDEI	CTNAG	6 cut(s)	303, 437, 587, 608, 770, 975
BstDSI	CCRYGG	2 cut(s)	244, 746
BstF5I	GGATG	7 cut(s)	557, 566, 799, 820, 960, 1066, 1117
BstKTI	GATC	4 cut(s)	321, 485, 658, 940
BstMBI	GATC	4 cut(s)	318, 482, 655, 937
BstMWI	GCNNNNNNNGC	3 cut(s)	256, 308, 809
BstNI	CCWGG	2 cut(s)	800, 965
BstSCI	CCNGG	2 cut(s)	798, 963
BstSFI	CTRYAG	2 cut(s)	536, 544
BstV1I	GCAGC	5 cut(s)	246, 320, 445, 663, 932
BstV2I	GAAGAC	1 cut(s)	897
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	280, 410
BtgI	CCRYGG	2 cut(s)	244, 746
BtgZI	GCGATG	1 cut(s)	200
BtsCI	GGATG	7 cut(s)	557, 566, 799, 820, 960, 1066, 1117
BtsI	GCAGTG	1 cut(s)	1098
BtsIMutI	CAGTG	2 cut(s)	778, 1098
Cac8I	GCNNGC	2 cut(s)	753, 1115
CciI	TCATGA	1 cut(s)	684
Cfr10I	RCCGGY	1 cut(s)	574
Cfr13I	GGNCC	2 cut(s)	129, 409
CseI	GACGC	1 cut(s)	791
Csp6I	GTAC	3 cut(s)	152, 424, 549
CspAI	ACCGGT	1 cut(s)	574
CviAII	CATG	8 cut(s)	245, 256, 332, 491, 685, 747, 926, 1125
CviQI	GTAC	3 cut(s)	152, 424, 549
DdeI	CTNAG	6 cut(s)	303, 437, 587, 608, 770, 975
DpnI	GATC	4 cut(s)	320, 484, 657, 939
DpnII	GATC	4 cut(s)	318, 482, 655, 937
DraI	TTTAAA	1 cut(s)	582
Eco130I	CCWWGG	3 cut(s)	244, 746, 992
Eco47I	GGWCC	1 cut(s)	129
Eco72I	CACGTG	1 cut(s)	722
EcoRII	CCWGG	2 cut(s)	798, 963
EcoT14I	CCWWGG	3 cut(s)	244, 746, 992
EcoT22I	ATGCAT	1 cut(s)	1130
ErhI	CCWWGG	3 cut(s)	244, 746, 992
FaeI	CATG	8 cut(s)	248, 259, 335, 494, 688, 750, 929, 1128
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FatI	CATG	8 cut(s)	244, 255, 331, 490, 684, 746, 925, 1124
FauNDI	CATATG	1 cut(s)	623
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	5 cut(s)	260, 309, 434, 652, 921
FokI	GGATG	7 cut(s)	544, 553, 806, 827, 947, 1073, 1104
Fsp4HI	GCNGC	5 cut(s)	260, 309, 434, 652, 921
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	5 cut(s)	260, 309, 434, 652, 921
GsuI	CTGGAG	1 cut(s)	448
HaeIII	GGCC	2 cut(s)	280, 410
HapII	CCGG	1 cut(s)	575
HgaI	GACGC	1 cut(s)	791
Hin1II	CATG	8 cut(s)	248, 259, 335, 494, 688, 750, 929, 1128
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HindIII	AAGCTT	1 cut(s)	605
HinfI	GANTC	2 cut(s)	457, 988
HpaI	GTTAAC	1 cut(s)	727
HpaII	CCGG	1 cut(s)	575
HphI	GGTGA	4 cut(s)	185, 564, 746, 1009
Hpy166II	GTNNAC	3 cut(s)	385, 727, 762
Hpy188I	TCNGA	5 cut(s)	272, 349, 440, 662, 976
Hpy188III	TCNNGA	5 cut(s)	20, 454, 685, 824, 839
Hpy8I	GTNNAC	3 cut(s)	385, 727, 762
Hpy99I	CGWCG	1 cut(s)	301
HpyAV	CCTTC	4 cut(s)	168, 200, 892, 1081
HpyCH4III	ACNGT	2 cut(s)	540, 1179
HpyCH4IV	ACGT	1 cut(s)	721
HpyCH4V	TGCA	7 cut(s)	67, 627, 651, 920, 1012, 1117, 1128
HpyF10VI	GCNNNNNNNGC	3 cut(s)	256, 308, 809
HpyF3I	CTNAG	6 cut(s)	303, 437, 587, 608, 770, 975
HpySE526I	ACGT	1 cut(s)	721
Hsp92II	CATG	8 cut(s)	248, 259, 335, 494, 688, 750, 929, 1128
KspAI	GTTAAC	1 cut(s)	727
Kzo9I	GATC	4 cut(s)	318, 482, 655, 937
LmnI	GCTCC	2 cut(s)	213, 267
Lsp1109I	GCAGC	5 cut(s)	246, 320, 445, 663, 932
LweI	GCATC	2 cut(s)	805, 1126
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	721
MaeIII	GTNAC	3 cut(s)	403, 734, 1179
MalI	GATC	4 cut(s)	320, 484, 657, 939
MbiI	CCGCTC	1 cut(s)	812
MboI	GATC	4 cut(s)	318, 482, 655, 937
MboII	GAAGA	8 cut(s)	100, 313, 677, 688, 700, 706, 902, 923
MflI	RGATCY	1 cut(s)	318
MluCI	AATT	3 cut(s)	788, 867, 1007
MmeI	TCCRAC	2 cut(s)	1015, 1180
Mph1103I	ATGCAT	1 cut(s)	1130
MroXI	GAANNNNTTC	2 cut(s)	680, 1107
MseI	TTAA	5 cut(s)	42, 581, 726, 1098, 1189
MslI	CAYNNNNRTG	1 cut(s)	599
MspI	CCGG	1 cut(s)	575
MspR9I	CCNGG	2 cut(s)	800, 965
MvaI	CCWGG	2 cut(s)	800, 965
MwoI	GCNNNNNNNGC	3 cut(s)	256, 308, 809
NcoI	CCATGG	2 cut(s)	244, 746
NdeI	CATATG	1 cut(s)	623
NdeII	GATC	4 cut(s)	318, 482, 655, 937
NlaIII	CATG	8 cut(s)	248, 259, 335, 494, 688, 750, 929, 1128
NlaIV	GGNNCC	1 cut(s)	411
NmuCI	GTSAC	1 cut(s)	734
NsiI	ATGCAT	1 cut(s)	1130
PagI	TCATGA	1 cut(s)	684
PdmI	GAANNNNTTC	2 cut(s)	680, 1107
PfeI	GAWTC	2 cut(s)	457, 988
PinAI	ACCGGT	1 cut(s)	574
PkrI	GCNGC	5 cut(s)	261, 310, 435, 653, 922
PmaCI	CACGTG	1 cut(s)	722
PmlI	CACGTG	1 cut(s)	722
Ppu21I	YACGTR	1 cut(s)	722
Psp6I	CCWGG	2 cut(s)	798, 963
PspCI	CACGTG	1 cut(s)	722
PspGI	CCWGG	2 cut(s)	798, 963
PspN4I	GGNNCC	1 cut(s)	411
PspPI	GGNCC	2 cut(s)	129, 409
PsuI	RGATCY	1 cut(s)	318
RsaI	GTAC	3 cut(s)	153, 425, 550
RsaNI	GTAC	3 cut(s)	152, 424, 549
RseI	CAYNNNNRTG	1 cut(s)	599
SaqAI	TTAA	5 cut(s)	42, 581, 726, 1098, 1189
SatI	GCNGC	5 cut(s)	260, 309, 434, 652, 921
Sau3AI	GATC	4 cut(s)	318, 482, 655, 937
Sau96I	GGNCC	2 cut(s)	129, 409
ScaI	AGTACT	2 cut(s)	425, 550
ScrFI	CCNGG	2 cut(s)	800, 965
SfaNI	GCATC	2 cut(s)	805, 1126
SfcI	CTRYAG	2 cut(s)	536, 544
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	599
Sse9I	AATT	3 cut(s)	788, 867, 1007
SsiI	CCGC	2 cut(s)	98, 812
SspI	AATATT	1 cut(s)	342
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	798, 963
StyI	CCWWGG	3 cut(s)	244, 746, 992
TaaI	ACNGT	2 cut(s)	540, 1179
TaiI	ACGT	1 cut(s)	724
TaqI	TCGA	3 cut(s)	481, 825, 940
TasI	AATT	3 cut(s)	788, 867, 1007
TatI	WGTACW	2 cut(s)	423, 548
TfiI	GAWTC	2 cut(s)	457, 988
Tru1I	TTAA	5 cut(s)	42, 581, 726, 1098, 1189
Tru9I	TTAA	5 cut(s)	42, 581, 726, 1098, 1189
TscAI	CASTG	2 cut(s)	778, 1098
TseFI	GTSAC	1 cut(s)	734
TseI	GCWGC	5 cut(s)	259, 308, 433, 651, 920
Tsp45I	GTSAC	1 cut(s)	734
TspRI	CASTG	2 cut(s)	778, 1098
VpaK11BI	GGWCC	1 cut(s)	129
XcmI	CCANNNNNNNNNTGG	1 cut(s)	753
XmiI	GTMKAC	1 cut(s)	384
XmnI	GAANNNNTTC	2 cut(s)	680, 1107
XspI	CTAG	1 cut(s)	29
ZrmI	AGTACT	2 cut(s)	425, 550
Zsp2I	ATGCAT	1 cut(s)	1130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.