Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006783

Physical Location & Seq

Genomic Coordinates Reverse (-)

10845980 .. 10849600

Gene Structure 3621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG073200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCTACAACAGACGAGGTCGCAGGATCGGCTCCAAAGATAGTGTGGAACGAAGCAAAGCAGAGGTTCGAGTCAGAGGACCAGAAAGCCTACATAGACTACGTTCTCAGAGAAAAGGGGAAAGTGATGGACTTGGTTCACACCTATGTCCCATCTTCCAAGAGAGGATTGGGCTTGGCCTCCCATCTCTGCGTTGCCGCCTTCAACCACGCCAAAGCCAACTCCATGTCCGTCATCCCCACCTGTTCTTACATCTCTAACAGCTACTGCTGTGTTTCACCAATCCATTGGAACTCATCAGTCCCATGGACATCTCTAGAACTCTGGCATGGTGAATCATTGTGGAATGAAAAGAACTTGTTCACTGACTGTGTTGATGTGCATCTGTGCAAGAAGGGTATAGAAGAAGAATCGAAGCTGGCAAGAAAATCAGCAACATACCTATCGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034212 GO:0036211 GO:0042579 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051276 GO:0061733 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_CG

Protein Analysis

150

Amino Acids

16.82

Weight (kDa)

6.58

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_CG	PF14542	25 - 87	1e-17	GCN5-related N-acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21770 AT1G77540
fragaria_vesca	FvH4_2g27080
malus_domestica	MD15G1347100.v1.1
prunus_persica	Prupe.1G494800_v2.0.a1
pyrus_communis	pycom15g31140
rosa_chinensis	RchiOBHm_Chr6g0295961
rosa_laevigata	RLG00000011752
rosa_multiflora	Rmu_sc0003139.1_g000011 Rmu_sc0011232.1_g000006 Rmu_sc0016143.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172020
rosa_rugosa	Rorug05G0239300 Rorug06G0218900 Rorug06G0255300 Rorug06G0255400
rosa_samantha	Rh3DG095600 Rh4DG073200 Rh6AG369100 Rh6BG376900 Rh6CG383100 Rh6DG369600
rosa_wichuraiana	Rw2G021900 Rw4G005100 Rw6G029190 Rw6G032190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	1 cut(s)	34
AgsI	TTSAA	1 cut(s)	205
AluBI	AGCT	2 cut(s)	264, 418
AluI	AGCT	2 cut(s)	264, 418
AlwI	GGATC	1 cut(s)	34
AlwNI	CAGNNNCTG	1 cut(s)	267
AoxI	GGCC	1 cut(s)	177
Asp700I	GAANNNNTTC	1 cut(s)	359
AspS9I	GGNCC	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	270, 344
AvaII	GGWCC	1 cut(s)	79
BccI	CCATC	3 cut(s)	121, 160, 192
BfaI	CTAG	1 cut(s)	317
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	33
BmsI	GCATC	1 cut(s)	391
BsaBI	GATNNNNATC	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	305
Bse8I	GATNNNNATC	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	305
BseGI	GGATG	1 cut(s)	234
BseJI	GATNNNNATC	1 cut(s)	381
BseMII	CTCAG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	179
BslFI	GGGAC	2 cut(s)	134, 287
BsmFI	GGGAC	2 cut(s)	134, 287
BsnI	GGCC	1 cut(s)	179
Bsp143I	GATC	1 cut(s)	26
Bsp19I	CCATGG	1 cut(s)	305
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	305
BssMI	GATC	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	420
BstDEI	CTNAG	1 cut(s)	107
BstDSI	CCRYGG	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	234
BstKTI	GATC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	26
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstXI	CCANNNNNNTGG	1 cut(s)	288
BsuRI	GGCC	1 cut(s)	179
BtgI	CCRYGG	1 cut(s)	305
BtsCI	GGATG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	1 cut(s)	420
CaiI	CAGNNNCTG	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	79
CviAII	CATG	4 cut(s)	226, 306, 329, 450
CviJI	RGCY	8 cut(s)	5, 32, 89, 174, 179, 218, 264, 418
CviKI_1	RGCY	8 cut(s)	5, 32, 89, 174, 179, 218, 264, 418
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	1 cut(s)	28
DpnII	GATC	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	79
EcoT14I	CCWWGG	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	305
FaeI	CATG	4 cut(s)	229, 309, 332, 453
FaiI	YATR	8 cut(s)	95, 147, 227, 307, 330, 401, 439, 451
FaqI	GGGAC	2 cut(s)	134, 287
FatI	CATG	4 cut(s)	225, 305, 328, 449
Fnu4HI	GCNGC	1 cut(s)	198
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	179
Hin1II	CATG	4 cut(s)	229, 309, 332, 453
HinfI	GANTC	3 cut(s)	71, 335, 410
HphI	GGTGA	2 cut(s)	270, 344
Hpy166II	GTNNAC	2 cut(s)	139, 363
Hpy188I	TCNGA	2 cut(s)	76, 110
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	2 cut(s)	139, 363
HpyAV	CCTTC	2 cut(s)	211, 388
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	2 cut(s)	382, 390
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	1 cut(s)	107
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	4 cut(s)	229, 309, 332, 453
Kzo9I	GATC	1 cut(s)	26
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	5 cut(s)	9, 95, 256, 310, 404
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	1 cut(s)	102
MalI	GATC	1 cut(s)	28
MboI	GATC	1 cut(s)	26
MboII	GAAGA	3 cut(s)	147, 416, 419
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	5 cut(s)	10, 57, 70, 158, 190
MroXI	GAANNNNTTC	1 cut(s)	359
MslI	CAYNNNNRTG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	29
NcoI	CCATGG	1 cut(s)	305
NdeII	GATC	1 cut(s)	26
NlaIII	CATG	4 cut(s)	229, 309, 332, 453
NlaIV	GGNNCC	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	359
PfeI	GAWTC	2 cut(s)	335, 410
PflFI	GACNNNGTC	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	79
PstNI	CAGNNNCTG	1 cut(s)	267
PsyI	GACNNNGTC	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	144
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	26
Sau96I	GGNCC	1 cut(s)	79
SchI	GAGTC	1 cut(s)	80
SetI	ASST	8 cut(s)	21, 68, 105, 146, 245, 266, 420, 444
SfaNI	GCATC	1 cut(s)	391
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	144
SsiI	CCGC	1 cut(s)	198
SspMI	CTAG	1 cut(s)	317
StyI	CCWWGG	1 cut(s)	305
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	3 cut(s)	69, 413, 446
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	2 cut(s)	335, 410
TscAI	CASTG	1 cut(s)	370
TspDTI	ATGAA	1 cut(s)	363
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	1 cut(s)	370
Tth111I	GACNNNGTC	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	79
XbaI	TCTAGA	1 cut(s)	316
XcmI	CCANNNNNNNNNTGG	2 cut(s)	42, 166
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.