Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006783

Physical Location & Seq

Genomic Coordinates Forward (+)

34940623 .. 34944561

Gene Structure 3939 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0218900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1404 bp

ATGGGGTTGTTTTGGTTTAGTGTAGTTTTGATTGGATTGGTGCTTGTTGGGGTTGAGGGGTACCCAGCTGAGGATCTGGTGGTGAAGTTGCCTGGTCAGCCACAAGTTGGGTTTAAGCAATATGCTGGGTATGTTGATGTGGATGTGAAAAATGGGAGGAGTTTGTTTTACTATTTTGTTGAAGCAGATAAGCAGCCTGATAAGAAGCCCCTATCTCTGTGGCTCAATGGAGGTCCAGGCTGTTCCTCTATTGGTGGAGGTGCCTTCACAGAGTTGGGTCCTTTTTACCCTAAAGGTGATGGTCGAGGCCTCCGAAAAAACCCAATGTCCTGGAATAGAGCATCTAATCTCCTCTTTGTTGAGTCTCCTGCTGGAGTTGGATGGTCATACTCAAATACAAGTTCCGATTATAATTCTGGGGATGCCTCCACTGCAAGGGATATGCACACATTCTTGTTGAAATGGTATGAGAAGTTTCCAGCTTACAAATCTAGGGAGTTGTTTCTTACCGGAGAAAGCTATGCAGGGCACTACATACCTCAATTGGCTGTTGCTATATTGGACCATAATAAACATTCAATTGGTTTCAAGTTCAATCTCAAAGGGGTTGCTATTGGGAATCCACTTCTGAAACTTGATCGTGATATACCGGCAACATATGAATATTTTTGGTCACATGGAATGATTTCTGATGAAATTGGCCTTACAATCATGAACGATTGTGATTTTGAGGATTATGAATTTGCAACACCTCACAATGTAAGCATTGCATGCAATAATGCAATAGCTACAGCCAATAGCATAGTTGGCGAGTATATAAACAATTACGATGTGATCCTTGATGTTTGTTATCCATCTATAGTGGAGCAAGAATTGAGACTGCGGAAAGTGGCTACTAAGATAAGTGTTGGAGTTGATGTGTGTATGACATATGAACGCCGGTTTTATTTCAACCTTCCTGAGGTTCAGAAAGCCCTTCATGCAAATCGTACAAACTTGCCTTATAGCTGGGGAATGTGCAGCGGTGTTCTTAATTACAGTGATACTGATGGTAACCTAAACATGCTTCCCTTGCTGGCGAGGATAGTTAAAAATCGTATACCAGTTTGGGTTTTCAGTGGAGACCAAGATTCTGTTGTTCCACTATTGGGCTCCCGAACACTCATCCGTGAATTAGCACATGATCTAAAGTTCCAGATAACAGTGCCATATGGAGCTTGGTTTCACAAAGGCCAGGTGGGAGGTTGGGCAACGGAGTATGGAAATCTATTGACCTTTGCCACAGTAAGAGGTGCTGCTCATATGGTACCCTATGCTCAACCATCAAGATCATTGCACCTGTTCAGTTCATTTGTTCGTAATCGGAGATTGCCCAACACGACACGTCCTCCCATTGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034212 GO:0036211 GO:0042579 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051276 GO:0061733 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_CG

Protein Analysis

467

Amino Acids

52.23

Weight (kDa)

6.61

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	31 - 454	8.6e-136	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21770 AT1G77540
fragaria_vesca	FvH4_2g27080
malus_domestica	MD15G1347100.v1.1
prunus_persica	Prupe.1G494800_v2.0.a1
pyrus_communis	pycom15g31140
rosa_chinensis	RchiOBHm_Chr6g0295961
rosa_laevigata	RLG00000011752
rosa_multiflora	Rmu_sc0003139.1_g000011 Rmu_sc0011232.1_g000006 Rmu_sc0016143.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172020
rosa_rugosa	Rorug05G0239300 Rorug06G0218900 Rorug06G0255300 Rorug06G0255400
rosa_samantha	Rh3DG095600 Rh4DG073200 Rh6AG369100 Rh6BG376900 Rh6CG383100 Rh6DG369600
rosa_wichuraiana	Rw2G021900 Rw4G005100 Rw6G029190 Rw6G032190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
Acc65I	GGTACC	2 cut(s)	60, 1306
AccB1I	GGYRCC	3 cut(s)	60, 260, 1306
AccB7I	CCANNNNNTGG	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	1099
AciI	CCGC	2 cut(s)	883, 1023
AclWI	GGATC	2 cut(s)	81, 829
AcsI	RAATTY	1 cut(s)	740
AfaI	GTAC	3 cut(s)	62, 991, 1308
AfiI	CCNNNNNNNGG	5 cut(s)	70, 107, 435, 961, 1148
AflIII	ACRYGT	1 cut(s)	1382
AgsI	TTSAA	6 cut(s)	182, 460, 579, 589, 595, 952
AjiI	CACGTC	1 cut(s)	1385
AjnI	CCWGG	4 cut(s)	91, 235, 329, 1233
AluBI	AGCT	6 cut(s)	68, 482, 519, 788, 1008, 1217
AluI	AGCT	6 cut(s)	68, 482, 519, 788, 1008, 1217
Alw26I	GTCTC	3 cut(s)	369, 871, 1116
AlwI	GGATC	2 cut(s)	81, 829
AoxI	GGCC	3 cut(s)	307, 700, 1231
ApeKI	GCWGC	3 cut(s)	193, 1020, 1295
ApoI	RAATTY	1 cut(s)	740
Asp700I	GAANNNNTTC	1 cut(s)	685
Asp718I	GGTACC	2 cut(s)	60, 1306
AspS9I	GGNCC	3 cut(s)	233, 278, 562
AsuHPI	GGTGA	2 cut(s)	94, 308
AvaII	GGWCC	3 cut(s)	233, 278, 562
AxyI	CCTNAGG	1 cut(s)	960
BaeGI	GKGCMC	1 cut(s)	531
BanI	GGYRCC	3 cut(s)	60, 260, 1306
BanII	GRGCYC	1 cut(s)	1154
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	205, 1032, 1282
BccI	CCATC	5 cut(s)	293, 375, 862, 1043, 1330
BciT130I	CCWGG	4 cut(s)	93, 237, 331, 1235
BcoDI	GTCTC	3 cut(s)	369, 871, 1116
BfaI	CTAG	1 cut(s)	492
BfmI	CTRYAG	2 cut(s)	789, 858
BisI	GCNGC	3 cut(s)	194, 1021, 1296
BlsI	GCNGC	3 cut(s)	195, 1022, 1297
Bme1390I	CCNGG	4 cut(s)	93, 237, 331, 1235
Bme18I	GGWCC	3 cut(s)	233, 278, 562
BmgBI	CACGTC	1 cut(s)	1385
BmgT120I	GGNCC	3 cut(s)	233, 278, 562
BmiI	GGNNCC	5 cut(s)	62, 262, 279, 1153, 1308
BmrFI	CCNGG	4 cut(s)	93, 237, 331, 1235
BmsI	GCATC	2 cut(s)	350, 412
BpmI	CTGGAG	1 cut(s)	393
Bpu10I	CCTNAGC	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	1116
BsaWI	WCCGGW	1 cut(s)	509
BsaXI	ACNNNNNCTCC	4 cut(s)	903, 933, 1372, 1402
Bsc4I	CCNNNNNNNGG	5 cut(s)	70, 107, 435, 961, 1148
Bse118I	RCCGGY	2 cut(s)	649, 939
Bse1I	ACTGG	1 cut(s)	1103
Bse21I	CCTNAGG	1 cut(s)	960
Bse3DI	GCAATG	2 cut(s)	765, 1331
BseBI	CCWGG	4 cut(s)	93, 237, 331, 1235
BseGI	GGATG	4 cut(s)	148, 386, 427, 1164
BseLI	CCNNNNNNNGG	5 cut(s)	70, 107, 435, 961, 1148
BseMI	GCAATG	2 cut(s)	765, 1331
BseMII	CTCAG	2 cut(s)	60, 951
BseNI	ACTGG	1 cut(s)	1103
BseRI	GAGGAG	2 cut(s)	172, 341
BseSI	GKGCMC	1 cut(s)	531
BseXI	GCAGC	3 cut(s)	205, 1032, 1282
BseYI	CCCAGC	3 cut(s)	64, 125, 1008
BsgI	GTGCAG	1 cut(s)	1039
BshFI	GGCC	3 cut(s)	309, 702, 1233
BshNI	GGYRCC	3 cut(s)	60, 260, 1306
BsiSI	CCGG	3 cut(s)	510, 650, 940
BslI	CCNNNNNNNGG	5 cut(s)	70, 107, 435, 961, 1148
BsmAI	GTCTC	3 cut(s)	369, 871, 1116
BsnI	GGCC	3 cut(s)	309, 702, 1233
Bso31I	GGTCTC	1 cut(s)	1116
Bsp1286I	GDGCHC	2 cut(s)	531, 1154
Bsp143I	GATC	5 cut(s)	73, 637, 834, 1183, 1328
BspACI	CCGC	2 cut(s)	883, 1023
BspANI	GGCC	3 cut(s)	309, 702, 1233
BspCNI	CTCAG	2 cut(s)	61, 952
BspHI	TCATGA	1 cut(s)	711
BspLI	GGNNCC	5 cut(s)	62, 262, 279, 1153, 1308
BspPI	GGATC	2 cut(s)	81, 829
BspT107I	GGYRCC	3 cut(s)	60, 260, 1306
BspTNI	GGTCTC	1 cut(s)	1116
BsrDI	GCAATG	2 cut(s)	765, 1331
BsrFI	RCCGGY	2 cut(s)	649, 939
BsrI	ACTGG	1 cut(s)	1103
BssAI	RCCGGY	2 cut(s)	649, 939
BssMI	GATC	5 cut(s)	73, 637, 834, 1183, 1328
BssNAI	GTATAC	1 cut(s)	1100
Bst1107I	GTATAC	1 cut(s)	1100
Bst2UI	CCWGG	4 cut(s)	93, 237, 331, 1235
Bst4CI	ACNGT	3 cut(s)	1040, 1204, 1285
BstAPI	GCANNNNNTGC	1 cut(s)	771
BstC8I	GCNNGC	2 cut(s)	772, 1077
BstDEI	CTNAG	3 cut(s)	69, 897, 960
BstEII	GGTNACC	1 cut(s)	1052
BstENI	CCTNNNNNAGG	1 cut(s)	959
BstF5I	GGATG	4 cut(s)	148, 386, 427, 1164
BstKTI	GATC	5 cut(s)	76, 640, 837, 1186, 1331
BstMAI	GTCTC	3 cut(s)	369, 871, 1116
BstMBI	GATC	5 cut(s)	73, 637, 834, 1183, 1328
BstMWI	GCNNNNNNNGC	6 cut(s)	97, 431, 771, 807, 980, 1072
BstNI	CCWGG	4 cut(s)	93, 237, 331, 1235
BstNSI	RCATGY	2 cut(s)	774, 1066
BstPI	GGTNACC	1 cut(s)	1052
BstSCI	CCNGG	4 cut(s)	91, 235, 329, 1233
BstSFI	CTRYAG	2 cut(s)	789, 858
BstSLI	GKGCMC	1 cut(s)	531
BstV1I	GCAGC	3 cut(s)	205, 1032, 1282
BstX2I	RGATCY	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	73
BstZ17I	GTATAC	1 cut(s)	1100
Bsu36I	CCTNAGG	1 cut(s)	960
BsuRI	GGCC	3 cut(s)	309, 702, 1233
BtrI	CACGTC	1 cut(s)	1385
BtsCI	GGATG	4 cut(s)	148, 386, 427, 1164
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	4 cut(s)	429, 1045, 1123, 1209
Cac8I	GCNNGC	2 cut(s)	772, 1077
CciI	TCATGA	1 cut(s)	711
Cfr10I	RCCGGY	2 cut(s)	649, 939
Cfr13I	GGNCC	3 cut(s)	233, 278, 562
Csp6I	GTAC	3 cut(s)	61, 990, 1307
CviAII	CATG	6 cut(s)	677, 712, 771, 980, 1063, 1181
CviQI	GTAC	3 cut(s)	61, 990, 1307
DdeI	CTNAG	3 cut(s)	69, 897, 960
DpnI	GATC	5 cut(s)	75, 639, 836, 1185, 1330
DpnII	GATC	5 cut(s)	73, 637, 834, 1183, 1328
Eco147I	AGGCCT	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	1154
Eco31I	GGTCTC	1 cut(s)	1116
Eco47I	GGWCC	3 cut(s)	233, 278, 562
Eco81I	CCTNAGG	1 cut(s)	960
Eco91I	GGTNACC	1 cut(s)	1052
EcoNI	CCTNNNNNAGG	1 cut(s)	959
EcoO109I	RGGNCCY	1 cut(s)	278
EcoO65I	GGTNACC	1 cut(s)	1052
EcoRII	CCWGG	4 cut(s)	91, 235, 329, 1233
EcoT38I	GRGCYC	1 cut(s)	1154
FaeI	CATG	6 cut(s)	680, 715, 774, 983, 1066, 1184
FatI	CATG	6 cut(s)	676, 711, 770, 979, 1062, 1180
FauNDI	CATATG	4 cut(s)	658, 931, 1210, 1302
FblI	GTMKAC	1 cut(s)	1099
Fnu4HI	GCNGC	3 cut(s)	194, 1021, 1296
FokI	GGATG	4 cut(s)	155, 393, 434, 1151
FriOI	GRGCYC	1 cut(s)	1154
Fsp4HI	GCNGC	3 cut(s)	194, 1021, 1296
FspBI	CTAG	1 cut(s)	492
GluI	GCNGC	3 cut(s)	194, 1021, 1296
GsaI	CCCAGC	3 cut(s)	68, 129, 1012
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	3 cut(s)	309, 702, 1233
HapII	CCGG	3 cut(s)	510, 650, 940
Hin1II	CATG	6 cut(s)	680, 715, 774, 983, 1066, 1184
HinfI	GANTC	3 cut(s)	362, 619, 1130
HpaII	CCGG	3 cut(s)	510, 650, 940
HphI	GGTGA	2 cut(s)	94, 308
Hpy166II	GTNNAC	1 cut(s)	1100
Hpy188I	TCNGA	6 cut(s)	314, 406, 630, 691, 969, 1365
Hpy188III	TCNNGA	6 cut(s)	641, 712, 959, 1155, 1195, 1326
Hpy8I	GTNNAC	1 cut(s)	1100
HpyAV	CCTTC	3 cut(s)	274, 965, 986
HpyCH4III	ACNGT	3 cut(s)	1040, 1204, 1285
HpyCH4IV	ACGT	1 cut(s)	1384
HpyF10VI	GCNNNNNNNGC	6 cut(s)	97, 431, 771, 807, 980, 1072
HpyF3I	CTNAG	3 cut(s)	69, 897, 960
HpySE526I	ACGT	1 cut(s)	1384
Hsp92II	CATG	6 cut(s)	680, 715, 774, 983, 1066, 1184
KpnI	GGTACC	2 cut(s)	64, 1310
Kzo9I	GATC	5 cut(s)	73, 637, 834, 1183, 1328
LmnI	GCTCC	3 cut(s)	865, 1157, 1214
Lsp1109I	GCAGC	3 cut(s)	205, 1032, 1282
LweI	GCATC	2 cut(s)	350, 412
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	1 cut(s)	1384
MaeIII	GTNAC	2 cut(s)	672, 1052
MalI	GATC	5 cut(s)	75, 639, 836, 1185, 1330
MboI	GATC	5 cut(s)	73, 637, 834, 1183, 1328
MfeI	CAATTG	2 cut(s)	542, 579
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	2 cut(s)	531, 1154
MluCI	AATT	9 cut(s)	412, 542, 579, 696, 740, 823, 872, 1033, 1172
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	2 cut(s)	358, 889
MroXI	GAANNNNTTC	1 cut(s)	685
MseI	TTAA	3 cut(s)	114, 1032, 1089
MspA1I	CMGCKG	2 cut(s)	68, 1023
MspI	CCGG	3 cut(s)	510, 650, 940
MspR9I	CCNGG	4 cut(s)	93, 237, 331, 1235
MunI	CAATTG	2 cut(s)	542, 579
MvaI	CCWGG	4 cut(s)	93, 237, 331, 1235
MwoI	GCNNNNNNNGC	6 cut(s)	97, 431, 771, 807, 980, 1072
NdeI	CATATG	4 cut(s)	658, 931, 1210, 1302
NdeII	GATC	5 cut(s)	73, 637, 834, 1183, 1328
NlaIII	CATG	6 cut(s)	680, 715, 774, 983, 1066, 1184
NlaIV	GGNNCC	5 cut(s)	62, 262, 279, 1153, 1308
NmuCI	GTSAC	1 cut(s)	672
NspI	RCATGY	2 cut(s)	774, 1066
PaeI	GCATGC	1 cut(s)	774
PagI	TCATGA	1 cut(s)	711
PceI	AGGCCT	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	310
PdmI	GAANNNNTTC	1 cut(s)	685
PfeI	GAWTC	2 cut(s)	619, 1130
PflMI	CCANNNNNTGG	1 cut(s)	107
PfoI	TCCNGGA	1 cut(s)	329
PkrI	GCNGC	3 cut(s)	195, 1022, 1297
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PpuMI	RGGWCCY	1 cut(s)	278
PsiI	TTATAA	1 cut(s)	411
Psp5II	RGGWCCY	1 cut(s)	278
Psp6I	CCWGG	4 cut(s)	91, 235, 329, 1233
PspEI	GGTNACC	1 cut(s)	1052
PspFI	CCCAGC	3 cut(s)	64, 125, 1008
PspGI	CCWGG	4 cut(s)	91, 235, 329, 1233
PspN4I	GGNNCC	5 cut(s)	62, 262, 279, 1153, 1308
PspPI	GGNCC	3 cut(s)	233, 278, 562
PspPPI	RGGWCCY	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	3 cut(s)	62, 991, 1308
RsaNI	GTAC	3 cut(s)	61, 990, 1307
SaqAI	TTAA	3 cut(s)	114, 1032, 1089
SatI	GCNGC	3 cut(s)	194, 1021, 1296
Sau3AI	GATC	5 cut(s)	73, 637, 834, 1183, 1328
Sau96I	GGNCC	3 cut(s)	233, 278, 562
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	4 cut(s)	93, 237, 331, 1235
SduI	GDGCHC	2 cut(s)	531, 1154
SfaNI	GCATC	2 cut(s)	350, 412
SfcI	CTRYAG	2 cut(s)	789, 858
SinI	GGWCC	3 cut(s)	233, 278, 562
SphI	GCATGC	1 cut(s)	774
Sse9I	AATT	9 cut(s)	412, 542, 579, 696, 740, 823, 872, 1033, 1172
SseBI	AGGCCT	1 cut(s)	309
SsiI	CCGC	2 cut(s)	883, 1023
SspI	AATATT	1 cut(s)	665
SspMI	CTAG	1 cut(s)	492
StuI	AGGCCT	1 cut(s)	309
StyD4I	CCNGG	4 cut(s)	91, 235, 329, 1233
TaaI	ACNGT	3 cut(s)	1040, 1204, 1285
TaiI	ACGT	1 cut(s)	1387
TaqI	TCGA	1 cut(s)	304
TasI	AATT	9 cut(s)	412, 542, 579, 696, 740, 823, 872, 1033, 1172
TfiI	GAWTC	2 cut(s)	619, 1130
Tru1I	TTAA	3 cut(s)	114, 1032, 1089
Tru9I	TTAA	3 cut(s)	114, 1032, 1089
TscAI	CASTG	4 cut(s)	436, 1045, 1123, 1209
TseFI	GTSAC	1 cut(s)	672
TseI	GCWGC	3 cut(s)	193, 1020, 1295
Tsp45I	GTSAC	1 cut(s)	672
TspDTI	ATGAA	7 cut(s)	675, 708, 728, 753, 948, 968, 1338
TspGWI	ACGGA	2 cut(s)	1157, 1268
TspRI	CASTG	4 cut(s)	436, 1045, 1123, 1209
Van91I	CCANNNNNTGG	1 cut(s)	107
VpaK11BI	GGWCC	3 cut(s)	233, 278, 562
XagI	CCTNNNNNAGG	1 cut(s)	959
XapI	RAATTY	1 cut(s)	740
XceI	RCATGY	2 cut(s)	774, 1066
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1215
XmiI	GTMKAC	1 cut(s)	1099
XmnI	GAANNNNTTC	1 cut(s)	685
XspI	CTAG	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.