Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011232.1

Orthogroup ID

OG0006783

Physical Location & Seq

Genomic Coordinates Reverse (-)

29055 .. 29510

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011232.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgattggatctgcatgtcagatctggaattcaaaattgaccggagagaccctcattgagattgcaggatcgcctcggggagatgaggagaaagagtggaagatggctacaacagatgaggtcgcaggatcggctccaaagatagtgtggaacgaagcgaagcagaggttcgagtcagaggaccagaaagcctacatagactacgttctcagagaaaaggggaaagtgatggacttggttcacacctatgtcccatcttccaagagaggcttgggcttggcctcccatctctgcgttgccgccttcaaccacgccaaagccaactccatgtccgtcatccccacctgttcttacgtctctgtaagtaaccacctacctcccctttatgggttcctcttgaattctcagttgtgtgtcatcaaacatggttttttgatttggggatttttaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0034212 GO:0036211 GO:0042579 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051276 GO:0061733 GO:0071704 GO:0071840 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_CG

Protein Analysis

151

Amino Acids

16.71

Weight (kDa)

6.95

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21770 AT1G77540
fragaria_vesca	FvH4_2g27080
malus_domestica	MD15G1347100.v1.1
prunus_persica	Prupe.1G494800_v2.0.a1
pyrus_communis	pycom15g31140
rosa_chinensis	RchiOBHm_Chr6g0295961
rosa_laevigata	RLG00000011752
rosa_multiflora	Rmu_sc0003139.1_g000011 Rmu_sc0011232.1_g000006 Rmu_sc0016143.1_g000002
rosa_roxburghii	Rroxscaffold_7G00172020
rosa_rugosa	Rorug05G0239300 Rorug06G0218900 Rorug06G0255300 Rorug06G0255400
rosa_samantha	Rh3DG095600 Rh4DG073200 Rh6AG369100 Rh6BG376900 Rh6CG383100 Rh6DG369600
rosa_wichuraiana	Rw2G021900 Rw4G005100 Rw6G029190 Rw6G032190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	300
AclWI	GGATC	3 cut(s)	16, 76, 136
AcsI	RAATTY	2 cut(s)	28, 400
AfiI	CCNNNNNNNGG	2 cut(s)	386, 387
AgsI	TTSAA	3 cut(s)	33, 307, 400
AluBI	AGCT	1 cut(s)	453
AluI	AGCT	1 cut(s)	453
Alw26I	GTCTC	2 cut(s)	41, 361
AlwI	GGATC	3 cut(s)	16, 76, 136
Ama87I	CYCGRG	1 cut(s)	75
AoxI	GGCC	1 cut(s)	279
ApoI	RAATTY	2 cut(s)	28, 400
AspS9I	GGNCC	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	181
BccI	CCATC	4 cut(s)	97, 223, 262, 294
BcoDI	GTCTC	2 cut(s)	41, 361
BglII	AGATCT	1 cut(s)	21
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme18I	GGWCC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	2 cut(s)	135, 392
BplI	GAGNNNNNCTC	2 cut(s)	36, 68
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	74
BsaWI	WCCGGW	1 cut(s)	41
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	2 cut(s)	386, 387
BseDI	CCNNGG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	336
BseLI	CCNNNNNNNGG	2 cut(s)	386, 387
BseMII	CTCAG	2 cut(s)	223, 419
BseRI	GAGGAG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	281
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	386, 387
BsmAI	GTCTC	2 cut(s)	41, 361
BsmBI	CGTCTC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	75
Bsp143I	GATC	4 cut(s)	8, 21, 68, 128
BspACI	CCGC	1 cut(s)	300
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	2 cut(s)	222, 418
BspLI	GGNNCC	2 cut(s)	135, 392
BspPI	GGATC	3 cut(s)	16, 76, 136
BspTNI	GGTCTC	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	4 cut(s)	8, 21, 68, 128
BstDEI	CTNAG	2 cut(s)	209, 405
BstF5I	GGATG	1 cut(s)	336
BstKTI	GATC	4 cut(s)	11, 24, 71, 131
BstMAI	GTCTC	2 cut(s)	41, 361
BstMBI	GATC	4 cut(s)	8, 21, 68, 128
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	18
BstX2I	RGATCY	2 cut(s)	8, 21
BstYI	RGATCY	2 cut(s)	8, 21
BsuRI	GGCC	1 cut(s)	281
BtsCI	GGATG	1 cut(s)	336
Cfr13I	GGNCC	1 cut(s)	181
CviAII	CATG	3 cut(s)	15, 328, 425
CviJI	RGCY	8 cut(s)	107, 134, 191, 270, 276, 281, 320, 453
CviKI_1	RGCY	8 cut(s)	107, 134, 191, 270, 276, 281, 320, 453
DdeI	CTNAG	2 cut(s)	209, 405
DpnI	GATC	4 cut(s)	10, 23, 70, 130
DpnII	GATC	4 cut(s)	8, 21, 68, 128
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	181
Eco88I	CYCGRG	1 cut(s)	75
EcoRI	GAATTC	2 cut(s)	28, 400
Esp3I	CGTCTC	1 cut(s)	361
FaeI	CATG	3 cut(s)	18, 331, 428
FaiI	YATR	6 cut(s)	16, 197, 249, 329, 387, 426
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	3 cut(s)	14, 327, 424
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	300
GluI	GCNGC	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	1 cut(s)	42
Hin1II	CATG	3 cut(s)	18, 331, 428
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	3 cut(s)	21, 178, 212
Hpy188III	TCNNGA	2 cut(s)	25, 397
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	1 cut(s)	313
HpyCH4IV	ACGT	2 cut(s)	204, 354
HpyCH4V	TGCA	2 cut(s)	14, 65
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	2 cut(s)	209, 405
HpySE526I	ACGT	2 cut(s)	204, 354
Hsp92II	CATG	3 cut(s)	18, 331, 428
Kzo9I	GATC	4 cut(s)	8, 21, 68, 128
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	6 cut(s)	10, 51, 55, 111, 197, 358
MaeII	ACGT	2 cut(s)	204, 354
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	4 cut(s)	10, 23, 70, 130
MboI	GATC	4 cut(s)	8, 21, 68, 128
MboII	GAAGA	2 cut(s)	112, 249
MflI	RGATCY	2 cut(s)	8, 21
MluCI	AATT	3 cut(s)	28, 35, 400
MlyI	GAGTC	1 cut(s)	182
MseI	TTAA	1 cut(s)	449
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	4 cut(s)	8, 21, 68, 128
NlaIII	CATG	3 cut(s)	18, 331, 428
NlaIV	GGNNCC	2 cut(s)	135, 392
NspI	RCATGY	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	301
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PspN4I	GGNNCC	2 cut(s)	135, 392
PspPI	GGNCC	1 cut(s)	181
PsuI	RGATCY	2 cut(s)	8, 21
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	449
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	4 cut(s)	8, 21, 68, 128
Sau96I	GGNCC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	182
SetI	ASST	9 cut(s)	123, 170, 207, 248, 347, 357, 375, 379, 455
SinI	GGWCC	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse9I	AATT	3 cut(s)	28, 35, 400
SsiI	CCGC	1 cut(s)	300
TaiI	ACGT	2 cut(s)	207, 357
TaqI	TCGA	1 cut(s)	171
TasI	AATT	3 cut(s)	28, 35, 400
TauI	GCSGC	1 cut(s)	302
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TspGWI	ACGGA	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	2 cut(s)	28, 400
XceI	RCATGY	1 cut(s)	18
XcmI	CCANNNNNNNNNTGG	2 cut(s)	144, 268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.