Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003996

Physical Location & Seq

Genomic Coordinates Reverse (-)

22652140 .. 22656103

Gene Structure 3964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g29110.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCAAAGCTTTAGTTACATTCCATCTTGGGTCTCTGCCATTTTCACATGCATGGGAGGTTGTCTTGGAAGCTGTAGCCAACCCAGATTTACTGTGGTAGATGAGCCATCAAACAGACTGAGAATTCAAGGTCAACCATTGAGGAAAAACAGCATATCAGAGGATTTCTGGAGCACTAGCACTATTGATATGGATAACAGTGCGATTCTGTCTCAGATAAGCATCACTTCAAACAACCCCCTTGACGCCCATGGTGCGAGCAGCACAAGCAATACTTCTGAATTTGTAAATCACGGTCTCTTACTGTGGAACCAGACAAGACAGCAGTGGGTTGGAAATAAAAAGTCTCAACCCCGGACACAACTTCGAGAACCTACAATAAGTTGGAATGCAACTTATGATAGCTTACTGAGTACCAACAAGCGTTTTCAGCGGCCAATCCCTCTTCCTGAAATGATCGACTTTCTTGTTGATATATGGGAGCAAGAAGGTTTGTATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4050

Protein Analysis

168

Amino Acids

18.95

Weight (kDa)

5.34

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
clamp_Gag1-like	PF13259	61 - 123	1.8e-10	Gag1-like, clamp domain
clamp_Gag1-like	PF13259	127 - 167	7.6e-13	Gag1-like, clamp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15350 AT1G15350 AT1G15350 AT1G15350 AT1G15350 AT1G15350
fragaria_vesca	FvH4_2g29110 FvH4_2g29110 FvH4_2g29110 FvH4_2g29110
malus_domestica	MD08G1149800.v1.1 MD15G1125100.v1.1
prunus_persica	Prupe.1G480600_v2.0.a1 Prupe.1G480600_v2.0.a1 Prupe.1G480600_v2.0.a1 Prupe.1G480600_v2.0.a1 Prupe.1G480600_v2.0.a1
pyrus_communis	pycom08g12580 pycom15g11270
rosa_chinensis	RchiOBHm_Chr6g0297991
rosa_laevigata	RLG00000011545
rosa_multiflora	Rmu_sc0002800.1_g000024
rosa_roxburghii	Rroxscaffold_7G00170020 Rroxscaffold_7G00178850
rosa_rugosa	Rorug06G0277500 Rorug06G0277500 Rorug06G0277600 Rorug06G0277700
rosa_samantha	Rh6AG388100 Rh6BG396300 Rh6CG402300 Rh6DG388500
rosa_wichuraiana	Rw6G033870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	433
AcoI	YGGCCR	1 cut(s)	434
AcsI	RAATTY	2 cut(s)	123, 281
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	1 cut(s)	415
AgsI	TTSAA	2 cut(s)	128, 231
AluBI	AGCT	3 cut(s)	9, 72, 405
AluI	AGCT	3 cut(s)	9, 72, 405
Alw21I	GWGCWC	1 cut(s)	176
Alw26I	GTCTC	4 cut(s)	37, 216, 302, 351
AoxI	GGCC	1 cut(s)	434
ApeKI	GCWGC	1 cut(s)	261
ApoI	RAATTY	2 cut(s)	123, 281
AsuC2I	CCSGG	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	2 cut(s)	31, 115
BcnI	CCSGG	1 cut(s)	355
BcoDI	GTCTC	4 cut(s)	37, 216, 302, 351
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	73
BisI	GCNGC	2 cut(s)	262, 434
BlsI	GCNGC	2 cut(s)	263, 435
Bme1390I	CCNGG	1 cut(s)	355
BmiI	GGNNCC	1 cut(s)	311
BmrFI	CCNGG	1 cut(s)	355
BmsI	GCATC	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	190
BpuMI	CCSGG	1 cut(s)	355
BsaBI	GATNNNNATC	1 cut(s)	221
BsaHI	GRCGYC	1 cut(s)	246
BsaI	GGTCTC	2 cut(s)	37, 302
BsaJI	CCNNGG	2 cut(s)	250, 353
Bse8I	GATNNNNATC	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	250, 353
BseJI	GATNNNNATC	1 cut(s)	221
BseMII	CTCAG	3 cut(s)	110, 227, 401
BseXI	GCAGC	1 cut(s)	273
BshFI	GGCC	1 cut(s)	436
BsiHKAI	GWGCWC	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	355
BsmAI	GTCTC	4 cut(s)	37, 216, 302, 351
BsmI	GAATGC	1 cut(s)	394
BsnI	GGCC	1 cut(s)	436
Bso31I	GGTCTC	2 cut(s)	37, 302
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	1 cut(s)	456
Bsp19I	CCATGG	1 cut(s)	250
BspACI	CCGC	1 cut(s)	433
BspANI	GGCC	1 cut(s)	436
BspCNI	CTCAG	3 cut(s)	111, 226, 402
BspLI	GGNNCC	1 cut(s)	311
BspTNI	GGTCTC	2 cut(s)	37, 302
BssECI	CCNNGG	2 cut(s)	250, 353
BssMI	GATC	1 cut(s)	456
BssNI	GRCGYC	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	250
Bst4CI	ACNGT	4 cut(s)	94, 200, 296, 306
Bst6I	CTCTTC	1 cut(s)	450
BstACI	GRCGYC	1 cut(s)	246
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	3 cut(s)	119, 213, 410
BstDSI	CCRYGG	1 cut(s)	250
BstKTI	GATC	1 cut(s)	459
BstMAI	GTCTC	4 cut(s)	37, 216, 302, 351
BstMBI	GATC	1 cut(s)	456
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 267, 430
BstNSI	RCATGY	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	353
BstSFI	CTRYAG	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	436
BtgI	CCRYGG	1 cut(s)	250
BtsI	GCAGTG	1 cut(s)	332
BtsIMutI	CAGTG	2 cut(s)	205, 332
Cac8I	GCNNGC	1 cut(s)	259
CseI	GACGC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	3 cut(s)	48, 52, 251
CviJI	RGCY	6 cut(s)	9, 72, 78, 106, 405, 436
CviKI_1	RGCY	6 cut(s)	9, 72, 78, 106, 405, 436
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	3 cut(s)	119, 213, 410
DpnI	GATC	1 cut(s)	458
DpnII	GATC	1 cut(s)	456
EaeI	YGGCCR	1 cut(s)	434
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
Eco130I	CCWWGG	1 cut(s)	250
Eco31I	GGTCTC	2 cut(s)	37, 302
EcoRI	GAATTC	1 cut(s)	123
EcoT14I	CCWWGG	1 cut(s)	250
EcoT22I	ATGCAT	1 cut(s)	53
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	3 cut(s)	51, 55, 254
FaiI	YATR	9 cut(s)	49, 53, 155, 191, 252, 399, 476, 478, 498
FalI	AAGNNNNNCTT	4 cut(s)	211, 243, 259, 291
FatI	CATG	3 cut(s)	47, 51, 250
Fnu4HI	GCNGC	2 cut(s)	262, 434
Fsp4HI	GCNGC	2 cut(s)	262, 434
FspBI	CTAG	1 cut(s)	177
GluI	GCNGC	2 cut(s)	262, 434
GsuI	CTGGAG	1 cut(s)	190
HaeIII	GGCC	1 cut(s)	436
HapII	CCGG	1 cut(s)	355
HgaI	GACGC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	3 cut(s)	51, 55, 254
HincII	GTYRAC	1 cut(s)	134
HindII	GTYRAC	1 cut(s)	134
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	355
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	3 cut(s)	160, 216, 280
Hpy188III	TCNNGA	3 cut(s)	169, 368, 449
Hpy8I	GTNNAC	1 cut(s)	134
HpyAV	CCTTC	1 cut(s)	482
HpyCH4III	ACNGT	4 cut(s)	94, 200, 296, 306
HpyCH4V	TGCA	3 cut(s)	4, 51, 392
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 267, 430
HpyF3I	CTNAG	3 cut(s)	119, 213, 410
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	3 cut(s)	51, 55, 254
Kzo9I	GATC	1 cut(s)	456
LmnI	GCTCC	2 cut(s)	171, 481
LpnPI	CCDG	5 cut(s)	97, 154, 326, 368, 462
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	1 cut(s)	458
MboI	GATC	1 cut(s)	456
MboII	GAAGA	1 cut(s)	437
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	2 cut(s)	123, 281
MmeI	TCCRAC	2 cut(s)	313, 365
MnlI	CCTC	4 cut(s)	50, 135, 154, 453
Mph1103I	ATGCAT	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	433
MspI	CCGG	1 cut(s)	355
MspR9I	CCNGG	1 cut(s)	355
Mva1269I	GAATGC	1 cut(s)	394
MwoI	GCNNNNNNNGC	3 cut(s)	254, 267, 430
NciI	CCSGG	1 cut(s)	355
NcoI	CCATGG	1 cut(s)	250
NdeII	GATC	1 cut(s)	456
NlaIII	CATG	3 cut(s)	51, 55, 254
NlaIV	GGNNCC	1 cut(s)	311
NsiI	ATGCAT	1 cut(s)	53
NspI	RCATGY	1 cut(s)	51
PctI	GAATGC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	205
PkrI	GCNGC	2 cut(s)	263, 435
PspN4I	GGNNCC	1 cut(s)	311
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
RseI	CAYNNNNRTG	1 cut(s)	50
SatI	GCNGC	2 cut(s)	262, 434
Sau3AI	GATC	1 cut(s)	456
ScrFI	CCNGG	1 cut(s)	355
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	7 cut(s)	11, 61, 74, 133, 376, 407, 493
SfaNI	GCATC	1 cut(s)	231
SfcI	CTRYAG	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	50
Sse9I	AATT	2 cut(s)	123, 281
SsiI	CCGC	1 cut(s)	433
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	1 cut(s)	353
StyI	CCWWGG	1 cut(s)	250
TaaI	ACNGT	4 cut(s)	94, 200, 296, 306
TaqI	TCGA	2 cut(s)	367, 459
TasI	AATT	2 cut(s)	123, 281
TauI	GCSGC	1 cut(s)	436
TfiI	GAWTC	1 cut(s)	205
TscAI	CASTG	2 cut(s)	205, 332
TseI	GCWGC	1 cut(s)	261
TspRI	CASTG	2 cut(s)	205, 332
XapI	RAATTY	2 cut(s)	123, 281
XceI	RCATGY	1 cut(s)	51
XcmI	CCANNNNNNNNNTGG	1 cut(s)	91
XspI	CTAG	1 cut(s)	177
Zsp2I	ATGCAT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.