Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003996

Physical Location & Seq

Genomic Coordinates Forward (+)

15153169 .. 15156631

Gene Structure 3463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1149800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGCATGGGAGCAGAGGCTGTCTTGGATGCTGTAGCCAACCCCGACTACTTATTCCCGTCAATGAGCCATCAAATGGACTGAGAATTCAAGGTCAATCAGTGAGAAAAAATAGCATATCAGAGGATTTCTGGAGCACTAGCACAATTGAAATGGAGAACAATGGAATCCAGTTTCAGAAAAGCATCTCATCAATTAGCACTTCAAACCCCCTTGATTCCCACGGTACTTCTGGCAGCACAAGCAATACACCTGAATTTGTAAATCATGGTCTTTTACTCTGGAACCAGACAAGGAATCTGTGGCTTGCAAATAAACAGCCTCAACGCCAGACACAACTTCGAGAACCTAGAATAAGTTGGAACGCCACTTACGAGAGCTTACTCGGTACCAACAAACCTTTTCGCCAGCCGATCCCTCTTCCTGAAATGATCGATTTTCTCGTCGATATTTGGGAGCAAGATGGTTTGTATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4050

Protein Analysis

159

Amino Acids

17.87

Weight (kDa)

5.9

Isoelectric Point (pI)

49.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
clamp_Gag1-like	PF13259	52 - 114	7.1e-10	Gag1-like, clamp domain
clamp_Gag1-like	PF13259	117 - 158	5.1e-14	Gag1-like, clamp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15350 AT1G15350 AT1G15350 AT1G15350 AT1G15350 AT1G15350
fragaria_vesca	FvH4_2g29110 FvH4_2g29110 FvH4_2g29110 FvH4_2g29110
malus_domestica	MD08G1149800.v1.1 MD15G1125100.v1.1
prunus_persica	Prupe.1G480600_v2.0.a1 Prupe.1G480600_v2.0.a1 Prupe.1G480600_v2.0.a1 Prupe.1G480600_v2.0.a1 Prupe.1G480600_v2.0.a1
pyrus_communis	pycom08g12580 pycom15g11270
rosa_chinensis	RchiOBHm_Chr6g0297991
rosa_laevigata	RLG00000011545
rosa_multiflora	Rmu_sc0002800.1_g000024
rosa_roxburghii	Rroxscaffold_7G00170020 Rroxscaffold_7G00178850
rosa_rugosa	Rorug06G0277500 Rorug06G0277500 Rorug06G0277600 Rorug06G0277700
rosa_samantha	Rh6AG388100 Rh6BG396300 Rh6CG402300 Rh6DG388500
rosa_wichuraiana	Rw6G033870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	386
AccB1I	GGYRCC	1 cut(s)	386
AccB7I	CCANNNNNTGG	1 cut(s)	74
AclWI	GGATC	1 cut(s)	406
AcsI	RAATTY	2 cut(s)	84, 254
AfaI	GTAC	2 cut(s)	226, 388
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	3 cut(s)	89, 149, 204
AluBI	AGCT	1 cut(s)	378
AluI	AGCT	1 cut(s)	378
Alw21I	GWGCWC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	406
AlwNI	CAGNNNCTG	1 cut(s)	18
ApeKI	GCWGC	1 cut(s)	234
ApoI	RAATTY	2 cut(s)	84, 254
Asp718I	GGTACC	1 cut(s)	386
BanI	GGYRCC	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	246
BccI	CCATC	2 cut(s)	76, 455
BfaI	CTAG	2 cut(s)	138, 348
BfmI	CTRYAG	1 cut(s)	31
BisI	GCNGC	1 cut(s)	235
BlsI	GCNGC	1 cut(s)	236
BmiI	GGNNCC	2 cut(s)	284, 388
BmsI	GCATC	2 cut(s)	17, 192
BpmI	CTGGAG	1 cut(s)	151
Bsa29I	ATCGAT	1 cut(s)	432
BsaJI	CCNNGG	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	169
BseCI	ATCGAT	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMII	CTCAG	1 cut(s)	71
BseNI	ACTGG	1 cut(s)	169
BseXI	GCAGC	1 cut(s)	246
BshNI	GGYRCC	1 cut(s)	386
BshVI	ATCGAT	1 cut(s)	432
BsiHKAI	GWGCWC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp143I	GATC	2 cut(s)	411, 429
BspCNI	CTCAG	1 cut(s)	72
BspDI	ATCGAT	1 cut(s)	432
BspLI	GGNNCC	2 cut(s)	284, 388
BspPI	GGATC	1 cut(s)	406
BspT107I	GGYRCC	1 cut(s)	386
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	1 cut(s)	220
BssMI	GATC	2 cut(s)	411, 429
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	423
BstC8I	GCNNGC	2 cut(s)	306, 407
BstDEI	CTNAG	1 cut(s)	80
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	32
BstKTI	GATC	2 cut(s)	414, 432
BstMBI	GATC	2 cut(s)	411, 429
BstMWI	GCNNNNNNNGC	1 cut(s)	240
BstSFI	CTRYAG	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	246
Bsu15I	ATCGAT	1 cut(s)	432
BsuTUI	ATCGAT	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	32
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	2 cut(s)	306, 407
CaiI	CAGNNNCTG	1 cut(s)	18
ClaI	ATCGAT	1 cut(s)	432
Csp6I	GTAC	2 cut(s)	225, 387
CviAII	CATG	2 cut(s)	5, 266
CviJI	RGCY	7 cut(s)	18, 36, 67, 304, 319, 378, 409
CviKI_1	RGCY	7 cut(s)	18, 36, 67, 304, 319, 378, 409
CviQI	GTAC	2 cut(s)	225, 387
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	2 cut(s)	413, 431
DpnII	GATC	2 cut(s)	411, 429
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
EcoRI	GAATTC	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	8, 269
FaiI	YATR	4 cut(s)	6, 116, 267, 471
FatI	CATG	2 cut(s)	4, 265
Fnu4HI	GCNGC	1 cut(s)	235
FokI	GGATG	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	235
FspBI	CTAG	2 cut(s)	138, 348
GluI	GCNGC	1 cut(s)	235
GsuI	CTGGAG	1 cut(s)	151
Hin1II	CATG	2 cut(s)	8, 269
HinfI	GANTC	3 cut(s)	165, 215, 295
Hpy188I	TCNGA	2 cut(s)	121, 177
Hpy188III	TCNNGA	4 cut(s)	130, 280, 341, 422
Hpy99I	CGWCG	1 cut(s)	446
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4V	TGCA	2 cut(s)	4, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	240
HpyF3I	CTNAG	1 cut(s)	80
Hsp92II	CATG	2 cut(s)	8, 269
KpnI	GGTACC	1 cut(s)	390
Kzo9I	GATC	2 cut(s)	411, 429
LmnI	GCTCC	3 cut(s)	9, 132, 454
LpnPI	CCDG	9 cut(s)	115, 182, 216, 264, 265, 299, 341, 419, 435
Lsp1109I	GCAGC	1 cut(s)	246
LweI	GCATC	2 cut(s)	17, 192
MaeI	CTAG	2 cut(s)	138, 348
MalI	GATC	2 cut(s)	413, 431
MboI	GATC	2 cut(s)	411, 429
MboII	GAAGA	1 cut(s)	410
MfeI	CAATTG	1 cut(s)	144
MhlI	GDGCHC	1 cut(s)	137
MluCI	AATT	4 cut(s)	84, 144, 192, 254
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	4 cut(s)	8, 115, 330, 426
Mph1103I	ATGCAT	1 cut(s)	6
MunI	CAATTG	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	240
NdeII	GATC	2 cut(s)	411, 429
NlaIII	CATG	2 cut(s)	8, 269
NlaIV	GGNNCC	2 cut(s)	284, 388
NsiI	ATGCAT	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	2 cut(s)	369, 438
PfeI	GAWTC	3 cut(s)	165, 215, 295
PflMI	CCANNNNNTGG	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	236
PspN4I	GGNNCC	2 cut(s)	284, 388
PsrI	GAACNNNNNNTAC	2 cut(s)	353, 385
PstNI	CAGNNNCTG	1 cut(s)	18
RsaI	GTAC	2 cut(s)	226, 388
RsaNI	GTAC	2 cut(s)	225, 387
SatI	GCNGC	1 cut(s)	235
Sau3AI	GATC	2 cut(s)	411, 429
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	5 cut(s)	94, 253, 349, 380, 400
SfaNI	GCATC	2 cut(s)	17, 192
SfcI	CTRYAG	1 cut(s)	31
Sse9I	AATT	4 cut(s)	84, 144, 192, 254
SspMI	CTAG	2 cut(s)	138, 348
TaaI	ACNGT	1 cut(s)	224
TaqI	TCGA	3 cut(s)	340, 432, 444
TasI	AATT	4 cut(s)	84, 144, 192, 254
TfiI	GAWTC	3 cut(s)	165, 215, 295
TscAI	CASTG	1 cut(s)	105
TseI	GCWGC	1 cut(s)	234
TspRI	CASTG	1 cut(s)	105
Van91I	CCANNNNNTGG	1 cut(s)	74
XapI	RAATTY	2 cut(s)	84, 254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XspI	CTAG	2 cut(s)	138, 348
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.