Rorug06G0277600

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003996
Physical Location & Seq
Forward (+)
42534480 .. 42535587
1108 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0277600.1

Sequence Viewer

Length: 444 bp
ATGGCTTACACATCTAAGCTTTTCCTTCTCACAGCTCTGCTTGTTCTGACCATGTCATTTGTGGTCAGTACTTCTCGATCATCGAATTACCCAACTGGGAGAAAATCAAACCTTGCAGCCAGATTGAACTTGGATGAAGAATCATCAACCTGCTGGGAGTCCTTATTTCAGCTCCAGGCATGCAGTAAAGAGGTTGTCTTGTTCTTCCTCAATGGTGAGACTTACTTAGGAGACGGCTGTTGCAAAGCCATTCGAACCATTGAGCACCAGTGTTGGCCAGCCTTGCTCGGGTCCCTAGGGCTTACCACGGAAGAGACTGATATACTAAAGGGTTACTGCGATGAAGCTGATCAAATCCAATCACCTCCGACATCGCCTTCACCACCATCTGTTCATCAGCCTACTGGAAAACTTGTTCCGGATCTGGACAAGTTGATTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4050

Protein Analysis

147

Amino Acids

16.1

Weight (kDa)

4.92

Isoelectric Point (pI)

54.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 50 - 114 3.3e-18 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 158
AccIII TCCGGA 1 cut(s) 418
AclWI GGATC 1 cut(s) 429
AcoI YGGCCR 1 cut(s) 275
AfaI GTAC 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 288
AgsI TTSAA 1 cut(s) 127
AjnI CCWGG 1 cut(s) 174
AloI GAACNNNNNNTCC 2 cut(s) 399, 431
AluBI AGCT 4 cut(s) 19, 35, 172, 347
AluI AGCT 4 cut(s) 19, 35, 172, 347
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 3 cut(s) 212, 225, 308
AlwI GGATC 1 cut(s) 429
Ama87I CYCGRG 1 cut(s) 287
Aor13HI TCCGGA 1 cut(s) 418
AoxI GGCC 1 cut(s) 275
ApeKI GCWGC 1 cut(s) 116
AspA2I CCTAGG 1 cut(s) 295
AspS9I GGNCC 1 cut(s) 291
AsuHPI GGTGA 3 cut(s) 227, 354, 372
AsuII TTCGAA 1 cut(s) 253
AvaI CYCGRG 1 cut(s) 287
AvaII GGWCC 1 cut(s) 291
AvrII CCTAGG 1 cut(s) 295
BalI TGGCCA 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 128
BccI CCATC 1 cut(s) 394
BceAI ACGGC 1 cut(s) 250
BciT130I CCWGG 1 cut(s) 176
BclI TGATCA 1 cut(s) 349
BcoDI GTCTC 3 cut(s) 212, 225, 308
BfaI CTAG 1 cut(s) 296
BfuAI ACCTGC 1 cut(s) 158
BisI GCNGC 1 cut(s) 117
BlnI CCTAGG 1 cut(s) 295
BlsI GCNGC 1 cut(s) 118
BmcAI AGTACT 1 cut(s) 70
Bme1390I CCNGG 1 cut(s) 176
Bme18I GGWCC 1 cut(s) 291
BmeT110I CYCGRG 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 2 cut(s) 292, 293
BmrFI CCNGG 1 cut(s) 176
BmrI ACTGGG 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 105
BpmI CTGGAG 1 cut(s) 158
Bpu14I TTCGAA 1 cut(s) 253
BsaJI CCNNGG 2 cut(s) 295, 306
BsaWI WCCGGW 1 cut(s) 418
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse1I ACTGG 3 cut(s) 100, 268, 409
BseAI TCCGGA 1 cut(s) 418
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 2 cut(s) 295, 306
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 288
BseNI ACTGG 3 cut(s) 100, 268, 409
BseXI GCAGC 1 cut(s) 128
BseYI CCCAGC 1 cut(s) 153
BshFI GGCC 1 cut(s) 277
BsiHKAI GWGCWC 1 cut(s) 267
BsiHKCI CYCGRG 1 cut(s) 287
BsiSI CCGG 1 cut(s) 419
BslFI GGGAC 1 cut(s) 277
BslI CCNNNNNNNGG 1 cut(s) 288
BsmAI GTCTC 3 cut(s) 212, 225, 308
BsmBI CGTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 277
BsnI GGCC 1 cut(s) 277
BsoBI CYCGRG 1 cut(s) 287
Bsp119I TTCGAA 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 267
Bsp13I TCCGGA 1 cut(s) 418
Bsp143I GATC 3 cut(s) 77, 349, 421
BspANI GGCC 1 cut(s) 277
BspEI TCCGGA 1 cut(s) 418
BspLI GGNNCC 2 cut(s) 292, 293
BspMI ACCTGC 1 cut(s) 158
BspPI GGATC 1 cut(s) 429
BspT104I TTCGAA 1 cut(s) 253
BsrI ACTGG 3 cut(s) 100, 268, 409
BssECI CCNNGG 2 cut(s) 295, 306
BssMI GATC 3 cut(s) 77, 349, 421
BssT1I CCWWGG 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 306
BstBI TTCGAA 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 181, 279
BstDEI CTNAG 2 cut(s) 15, 226
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 3 cut(s) 80, 352, 424
BstMAI GTCTC 3 cut(s) 212, 225, 308
BstMBI GATC 3 cut(s) 77, 349, 421
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstNI CCWGG 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BsuRI GGCC 1 cut(s) 277
BtgI CCRYGG 1 cut(s) 306
BtgZI GCGATG 2 cut(s) 354, 357
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 275
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 2 cut(s) 181, 279
Cfr13I GGNCC 1 cut(s) 291
Csp6I GTAC 1 cut(s) 69
CviAII CATG 2 cut(s) 52, 180
CviQI GTAC 1 cut(s) 69
DdeI CTNAG 2 cut(s) 15, 226
DpnI GATC 3 cut(s) 79, 351, 423
DpnII GATC 3 cut(s) 77, 349, 421
EaeI YGGCCR 1 cut(s) 275
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 291
Eco88I CYCGRG 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 291
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 295
Esp3I CGTCTC 1 cut(s) 225
FaeI CATG 2 cut(s) 55, 183
FaiI YATR 3 cut(s) 53, 181, 323
FaqI GGGAC 1 cut(s) 277
FatI CATG 2 cut(s) 51, 179
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 1 cut(s) 296
GluI GCNGC 1 cut(s) 117
GsaI CCCAGC 1 cut(s) 157
GsuI CTGGAG 1 cut(s) 158
HaeIII GGCC 1 cut(s) 277
HapII CCGG 1 cut(s) 419
Hin1II CATG 2 cut(s) 55, 183
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 3 cut(s) 140, 158, 436
HpaII CCGG 1 cut(s) 419
HphI GGTGA 3 cut(s) 227, 354, 372
Hpy188I TCNGA 2 cut(s) 48, 369
Hpy188III TCNNGA 3 cut(s) 75, 419, 425
HpyAV CCTTC 2 cut(s) 35, 387
HpyCH4V TGCA 3 cut(s) 116, 183, 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 2 cut(s) 15, 226
Hsp92II CATG 2 cut(s) 55, 183
KflI GGGWCCC 1 cut(s) 291
Kpn2I TCCGGA 1 cut(s) 418
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 3 cut(s) 77, 349, 421
LmnI GCTCC 1 cut(s) 177
Lsp1109I GCAGC 1 cut(s) 128
MaeI CTAG 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 332
MalI GATC 3 cut(s) 79, 351, 423
MboI GATC 3 cut(s) 77, 349, 421
MboII GAAGA 3 cut(s) 149, 196, 323
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 1 cut(s) 267
MlsI TGGCCA 1 cut(s) 277
MluCI AATT 1 cut(s) 85
MluNI TGGCCA 1 cut(s) 277
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 3 cut(s) 184, 218, 375
Mox20I TGGCCA 1 cut(s) 277
MroI TCCGGA 1 cut(s) 418
MscI TGGCCA 1 cut(s) 277
Msp20I TGGCCA 1 cut(s) 277
MspI CCGG 1 cut(s) 419
MspR9I CCNGG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 283
NdeII GATC 3 cut(s) 77, 349, 421
NlaIII CATG 2 cut(s) 55, 183
NlaIV GGNNCC 2 cut(s) 292, 293
NspI RCATGY 1 cut(s) 183
NspV TTCGAA 1 cut(s) 253
PaeI GCATGC 1 cut(s) 183
PfeI GAWTC 2 cut(s) 140, 436
PflFI GACNNNGTC 1 cut(s) 52
PkrI GCNGC 1 cut(s) 118
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PpuMI RGGWCCY 1 cut(s) 291
Psp5II RGGWCCY 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 174
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 2 cut(s) 292, 293
PspPI GGNCC 1 cut(s) 291
PspPPI RGGWCCY 1 cut(s) 291
PsuI RGATCY 1 cut(s) 421
PsyI GACNNNGTC 1 cut(s) 52
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 3 cut(s) 77, 349, 421
Sau96I GGNCC 1 cut(s) 291
ScaI AGTACT 1 cut(s) 70
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 267
SetI ASST 8 cut(s) 21, 37, 114, 152, 174, 195, 349, 367
SfuI TTCGAA 1 cut(s) 253
SinI GGWCC 1 cut(s) 291
SphI GCATGC 1 cut(s) 183
Sse9I AATT 1 cut(s) 85
SspMI CTAG 1 cut(s) 296
StyD4I CCNGG 1 cut(s) 174
StyI CCWWGG 1 cut(s) 295
TaqI TCGA 3 cut(s) 76, 83, 253
TasI AATT 1 cut(s) 85
TatI WGTACW 1 cut(s) 68
TfiI GAWTC 2 cut(s) 140, 436
TscAI CASTG 1 cut(s) 275
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 3 cut(s) 150, 357, 383
TspGWI ACGGA 2 cut(s) 323, 429
TspRI CASTG 1 cut(s) 275
Tth111I GACNNNGTC 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 291
XceI RCATGY 1 cut(s) 183
XcmI CCANNNNNNNNNTGG 2 cut(s) 58, 127
XmaJI CCTAGG 1 cut(s) 295
XspI CTAG 1 cut(s) 296
ZrmI AGTACT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.