Rh6AG388100

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003996
Physical Location & Seq
Reverse (-)
58714671 .. 58718753
4083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG388100.1

Sequence Viewer

Length: 363 bp
ATGTCAGAGGATTTCTGGAGCACTAGCACTATTGAAATGGATAACAGTGCGATTCAGTCTCAGATAAGCGTCTCATCAATTAGCACTTCAAACAATCCCCTTGACTCCCGTGGTGCGGGCAGCACAAGCAATACTCCTGAATTTGTAAACCACGGTCTCTTACTCTGGAACCAGACAAGACAGCAGTGGCGTGGAAATAAAAAGTCTCGACCCCAGACACAACTTCGAGAACCTACAATAAGTTGGAATGCAACGTATGAGAGCTTACTTAGTACCAACAAGCCCTTTCGCCAGCCAATCCCTCTTCCTGAAATGATCGATTTTCTTGTTGATATATGGGAGCAAGAGGGTTTGTATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4050

Protein Analysis

120

Amino Acids

13.72

Weight (kDa)

4.75

Isoelectric Point (pI)

54.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
clamp_Gag1-like PF13259 10 - 120 2e-25 Gag1-like, clamp domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 116
AcsI RAATTY 1 cut(s) 140
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 1 cut(s) 115
AgsI TTSAA 2 cut(s) 35, 90
AluBI AGCT 1 cut(s) 264
AluI AGCT 1 cut(s) 264
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 4 cut(s) 63, 76, 161, 210
ApeKI GCWGC 1 cut(s) 120
ApoI RAATTY 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 132
BcoDI GTCTC 4 cut(s) 63, 76, 161, 210
BfaI CTAG 1 cut(s) 24
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
BmiI GGNNCC 1 cut(s) 170
BpmI CTGGAG 1 cut(s) 37
Bsa29I ATCGAT 1 cut(s) 318
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 2 cut(s) 109, 151
Bsc4I CCNNNNNNNGG 1 cut(s) 115
BseCI ATCGAT 1 cut(s) 318
BseDI CCNNGG 2 cut(s) 109, 151
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 132
BshVI ATCGAT 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 115
BsmAI GTCTC 4 cut(s) 63, 76, 161, 210
BsmBI CGTCTC 1 cut(s) 76
BsmI GAATGC 1 cut(s) 253
Bso31I GGTCTC 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 1 cut(s) 315
BspACI CCGC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 73
BspDI ATCGAT 1 cut(s) 318
BspLI GGNNCC 1 cut(s) 170
BspTNI GGTCTC 1 cut(s) 161
BssECI CCNNGG 2 cut(s) 109, 151
BssMI GATC 1 cut(s) 315
Bst4CI ACNGT 2 cut(s) 47, 155
Bst6I CTCTTC 1 cut(s) 309
BstC8I GCNNGC 2 cut(s) 118, 293
BstDEI CTNAG 2 cut(s) 60, 269
BstDSI CCRYGG 2 cut(s) 109, 151
BstKTI GATC 1 cut(s) 318
BstMAI GTCTC 4 cut(s) 63, 76, 161, 210
BstMBI GATC 1 cut(s) 315
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 132
Bsu15I ATCGAT 1 cut(s) 318
BsuTUI ATCGAT 1 cut(s) 318
BtgI CCRYGG 2 cut(s) 109, 151
BtsI GCAGTG 1 cut(s) 191
BtsIMutI CAGTG 2 cut(s) 52, 191
Cac8I GCNNGC 2 cut(s) 118, 293
ClaI ATCGAT 1 cut(s) 318
CseI GACGC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 273
CviJI RGCY 3 cut(s) 264, 283, 295
CviKI_1 RGCY 3 cut(s) 264, 283, 295
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 2 cut(s) 60, 269
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Eco31I GGTCTC 1 cut(s) 161
Esp3I CGTCTC 1 cut(s) 76
FaiI YATR 4 cut(s) 258, 335, 337, 357
FauI CCCGC 1 cut(s) 109
Fnu4HI GCNGC 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 121
FspBI CTAG 1 cut(s) 24
GluI GCNGC 1 cut(s) 121
GsuI CTGGAG 1 cut(s) 37
HgaI GACGC 1 cut(s) 58
HinfI GANTC 2 cut(s) 52, 104
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 2 cut(s) 7, 63
Hpy188III TCNNGA 6 cut(s) 16, 137, 166, 207, 227, 308
Hpy8I GTNNAC 1 cut(s) 148
HpyCH4III ACNGT 2 cut(s) 47, 155
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 2 cut(s) 60, 269
HpySE526I ACGT 1 cut(s) 254
Kzo9I GATC 1 cut(s) 315
LmnI GCTCC 2 cut(s) 18, 340
LpnPI CCDG 6 cut(s) 150, 151, 185, 227, 305, 321
Lsp1109I GCAGC 1 cut(s) 132
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 254
MalI GATC 1 cut(s) 317
MboI GATC 1 cut(s) 315
MboII GAAGA 1 cut(s) 296
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 2 cut(s) 78, 140
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 2 cut(s) 312, 340
Mva1269I GAATGC 1 cut(s) 253
MwoI GCNNNNNNNGC 1 cut(s) 126
NdeII GATC 1 cut(s) 315
NlaIV GGNNCC 1 cut(s) 170
PctI GAATGC 1 cut(s) 253
PfeI GAWTC 1 cut(s) 52
PkrI GCNGC 1 cut(s) 122
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 170
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
SatI GCNGC 1 cut(s) 121
Sau3AI GATC 1 cut(s) 315
SchI GAGTC 1 cut(s) 98
SduI GDGCHC 1 cut(s) 23
SetI ASST 3 cut(s) 235, 257, 266
Sse9I AATT 2 cut(s) 78, 140
SsiI CCGC 1 cut(s) 116
SspMI CTAG 1 cut(s) 24
TaaI ACNGT 2 cut(s) 47, 155
TaiI ACGT 1 cut(s) 257
TaqI TCGA 3 cut(s) 208, 226, 318
TasI AATT 2 cut(s) 78, 140
TfiI GAWTC 1 cut(s) 52
TscAI CASTG 2 cut(s) 52, 191
TseI GCWGC 1 cut(s) 120
TspRI CASTG 2 cut(s) 52, 191
XapI RAATTY 1 cut(s) 140
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.