Prupe.1G480600_v2.0.a1

Protein of unknown function (DUF4050)

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
40138356 .. 40142543
4188 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G480600.4

Sequence Viewer

Length: 624 bp
ATGTATTCTAGGTGTTGTTTGTTGTCCCAGACGGAGAGATGCTTTGGGAAGAAACCCTGCTGTTCATTTTTTGTATTCACTGGTGCTTGTTTTCGAGCTTTTATGGCTCTACTTACGGAGAAATTCAAAAGGAAATGCGAGGCACTTTTCAGTAGCAGAGGCTGTCTTGGATGCTGTACTGGTACTCAACCCCGACTACTTATTGCGGTCGATGAGCCATCAAACAGACTGAGAATTCAAGGTCGATCGGTGAGGAAAAATAGCATATCAGAGGACTTCTGGAGCACTAGCACTATGGAAATGGAGAACAGTGGAGTCCAGTGCCAGAAAAGCATCTCATCAGTGAGCACTTCAAACCCCATTGATTCCCATGGTACTTCCGGCAGCACAAGCAATACACCTGAATTTGTAAATCATGGTCTTTTACTCTGGAACCAGACGAGGAGTCAGTGGCTTGCAAATAGGTCTCAACACCAGACGCAACTTCGAGAACCTAGAATAAGTTGGAATGCCACTTATGAGAGTTTACTTAGTACCAACAAGCCGTTTCGCCAACCGATCCCTCTCCCTGAAATGATCGATTTTCTTGTTGATATATGGGAGCAAGAGGGTTTGTACGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

208

Amino Acids

23.56

Weight (kDa)

8.51

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 206
AclWI GGATC 1 cut(s) 553
AcsI RAATTY 3 cut(s) 122, 234, 404
AfaI GTAC 5 cut(s) 178, 184, 376, 535, 617
AgsI TTSAA 3 cut(s) 127, 239, 354
AhdI GACNNNNNGTC 1 cut(s) 444
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
Alw21I GWGCWC 2 cut(s) 287, 350
Alw26I GTCTC 1 cut(s) 471
AlwI GGATC 1 cut(s) 553
AlwNI CAGNNNCTG 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 384
ApoI RAATTY 3 cut(s) 122, 234, 404
AsuHPI GGTGA 1 cut(s) 262
Bbv12I GWGCWC 2 cut(s) 287, 350
BbvI GCAGC 1 cut(s) 396
BccI CCATC 1 cut(s) 226
BceAI ACGGC 1 cut(s) 529
BcoDI GTCTC 1 cut(s) 471
BfaI CTAG 3 cut(s) 9, 288, 495
BisI GCNGC 1 cut(s) 385
BlsI GCNGC 1 cut(s) 386
BmeRI GACNNNNNGTC 1 cut(s) 444
BmiI GGNNCC 1 cut(s) 434
BmsI GCATC 3 cut(s) 29, 161, 342
BpmI CTGGAG 1 cut(s) 301
Bsa29I ATCGAT 1 cut(s) 579
BsaI GGTCTC 1 cut(s) 471
BsaJI CCNNGG 1 cut(s) 370
Bse1I ACTGG 3 cut(s) 85, 184, 319
BseCI ATCGAT 1 cut(s) 579
BseDI CCNNGG 1 cut(s) 370
BseGI GGATG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 221
BseNI ACTGG 3 cut(s) 85, 184, 319
BseRI GAGGAG 1 cut(s) 457
BseXI GCAGC 1 cut(s) 396
Bsh1285I CGRYCG 2 cut(s) 210, 248
BshVI ATCGAT 1 cut(s) 579
BsiEI CGRYCG 2 cut(s) 210, 248
BsiHKAI GWGCWC 2 cut(s) 287, 350
BsiSI CCGG 1 cut(s) 381
BslFI GGGAC 1 cut(s) 10
BsmAI GTCTC 1 cut(s) 471
BsmFI GGGAC 1 cut(s) 10
BsmI GAATGC 1 cut(s) 514
Bso31I GGTCTC 1 cut(s) 471
Bsp1286I GDGCHC 2 cut(s) 287, 350
Bsp143I GATC 3 cut(s) 245, 558, 576
Bsp19I CCATGG 1 cut(s) 370
BspACI CCGC 1 cut(s) 206
BspCNI CTCAG 1 cut(s) 222
BspDI ATCGAT 1 cut(s) 579
BspLI GGNNCC 1 cut(s) 434
BspPI GGATC 1 cut(s) 553
BspTNI GGTCTC 1 cut(s) 471
BsrI ACTGG 3 cut(s) 85, 184, 319
BssECI CCNNGG 1 cut(s) 370
BssMI GATC 3 cut(s) 245, 558, 576
BssT1I CCWWGG 1 cut(s) 370
Bst4CI ACNGT 1 cut(s) 311
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 2 cut(s) 230, 530
BstDSI CCRYGG 1 cut(s) 370
BstF5I GGATG 1 cut(s) 176
BstKTI GATC 3 cut(s) 248, 561, 579
BstMAI GTCTC 1 cut(s) 471
BstMBI GATC 3 cut(s) 245, 558, 576
BstMCI CGRYCG 2 cut(s) 210, 248
BstMWI GCNNNNNNNGC 3 cut(s) 104, 330, 390
BstV1I GCAGC 1 cut(s) 396
Bsu15I ATCGAT 1 cut(s) 579
BsuTUI ATCGAT 1 cut(s) 579
BtgI CCRYGG 1 cut(s) 370
BtsCI GGATG 1 cut(s) 176
BtsIMutI CAGTG 5 cut(s) 78, 316, 326, 348, 455
Cac8I GCNNGC 1 cut(s) 456
CaiI CAGNNNCTG 1 cut(s) 162
ClaI ATCGAT 1 cut(s) 579
CseI GACGC 1 cut(s) 487
Csp6I GTAC 5 cut(s) 177, 183, 375, 534, 616
CviAII CATG 2 cut(s) 371, 416
CviJI RGCY 6 cut(s) 98, 107, 162, 217, 454, 544
CviKI_1 RGCY 6 cut(s) 98, 107, 162, 217, 454, 544
CviQI GTAC 5 cut(s) 177, 183, 375, 534, 616
DdeI CTNAG 2 cut(s) 230, 530
DpnI GATC 3 cut(s) 247, 560, 578
DpnII GATC 3 cut(s) 245, 558, 576
DriI GACNNNNNGTC 1 cut(s) 444
Eam1105I GACNNNNNGTC 1 cut(s) 444
Eco130I CCWWGG 1 cut(s) 370
Eco31I GGTCTC 1 cut(s) 471
EcoRI GAATTC 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 370
FaeI CATG 2 cut(s) 374, 419
FaiI YATR 8 cut(s) 104, 266, 296, 372, 417, 519, 596, 598
FaqI GGGAC 1 cut(s) 10
FatI CATG 2 cut(s) 370, 415
Fnu4HI GCNGC 1 cut(s) 385
FokI GGATG 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 385
FspBI CTAG 3 cut(s) 9, 288, 495
GluI GCNGC 1 cut(s) 385
GsuI CTGGAG 1 cut(s) 301
HapII CCGG 1 cut(s) 381
HgaI GACGC 1 cut(s) 487
Hin1II CATG 2 cut(s) 374, 419
HinfI GANTC 3 cut(s) 315, 365, 445
HpaII CCGG 1 cut(s) 381
HphI GGTGA 1 cut(s) 262
Hpy166II GTNNAC 1 cut(s) 527
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 3 cut(s) 280, 430, 488
Hpy8I GTNNAC 1 cut(s) 527
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4V TGCA 1 cut(s) 458
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 330, 390
HpyF3I CTNAG 2 cut(s) 230, 530
Hsp92II CATG 2 cut(s) 374, 419
Kzo9I GATC 3 cut(s) 245, 558, 576
LmnI GCTCC 2 cut(s) 282, 601
Lsp1109I GCAGC 1 cut(s) 396
LweI GCATC 3 cut(s) 29, 161, 342
MaeI CTAG 3 cut(s) 9, 288, 495
MalI GATC 3 cut(s) 247, 560, 578
MboI GATC 3 cut(s) 245, 558, 576
MboII GAAGA 1 cut(s) 61
MhlI GDGCHC 2 cut(s) 287, 350
MluCI AATT 3 cut(s) 122, 234, 404
MlyI GAGTC 2 cut(s) 324, 454
MmeI TCCRAC 1 cut(s) 485
MnlI CCTC 7 cut(s) 133, 152, 246, 265, 435, 573, 601
MspI CCGG 1 cut(s) 381
Mva1269I GAATGC 1 cut(s) 514
MwoI GCNNNNNNNGC 3 cut(s) 104, 330, 390
NcoI CCATGG 1 cut(s) 370
NdeII GATC 3 cut(s) 245, 558, 576
NlaIII CATG 2 cut(s) 374, 419
NlaIV GGNNCC 1 cut(s) 434
PctI GAATGC 1 cut(s) 514
PfeI GAWTC 1 cut(s) 365
PkrI GCNGC 1 cut(s) 386
Ple19I CGATCG 1 cut(s) 248
PleI GAGTC 2 cut(s) 323, 453
PpsI GAGTC 2 cut(s) 323, 453
PspN4I GGNNCC 1 cut(s) 434
PstNI CAGNNNCTG 1 cut(s) 162
PvuI CGATCG 1 cut(s) 248
RsaI GTAC 5 cut(s) 178, 184, 376, 535, 617
RsaNI GTAC 5 cut(s) 177, 183, 375, 534, 616
SatI GCNGC 1 cut(s) 385
Sau3AI GATC 3 cut(s) 245, 558, 576
SchI GAGTC 2 cut(s) 324, 454
SduI GDGCHC 2 cut(s) 287, 350
SetI ASST 6 cut(s) 14, 100, 244, 403, 467, 496
SfaNI GCATC 3 cut(s) 29, 161, 342
Sse9I AATT 3 cut(s) 122, 234, 404
SsiI CCGC 1 cut(s) 206
SspMI CTAG 3 cut(s) 9, 288, 495
StyI CCWWGG 1 cut(s) 370
TaaI ACNGT 1 cut(s) 311
TaqI TCGA 5 cut(s) 94, 210, 244, 487, 579
TasI AATT 3 cut(s) 122, 234, 404
TatI WGTACW 1 cut(s) 176
TfiI GAWTC 1 cut(s) 365
TscAI CASTG 5 cut(s) 85, 316, 326, 348, 455
TseI GCWGC 1 cut(s) 384
TspDTI ATGAA 1 cut(s) 54
TspGWI ACGGA 2 cut(s) 47, 131
TspRI CASTG 5 cut(s) 85, 316, 326, 348, 455
XapI RAATTY 3 cut(s) 122, 234, 404
XspI CTAG 3 cut(s) 9, 288, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.