Rmu_sc0002800.1_g000024

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002800.1
OG0003996
Physical Location & Seq
Forward (+)
98018 .. 99469
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002800.1_g000024.1.cds

Sequence Viewer

Length: 354 bp
atgtcagaggatttctggagcactagcactattgaaatggataacagtgcgattcagtctcagataagcatctcatcttcaaacaatccccttgacgcccgtggtgcgggcagcacaagcaatactcctgaatttgtaaatcacggtctcttactctggaaccagacaagacagcagtggcgtggaaataaaaagtctcgaccccagacacaacttcgagaacctacaataagttggaatgcaacttatgagagcttacttagtaccaacaagccctttcgccagccaatccctcttcctgaaatgatcgattttcttgttgatatatgggagcaagagggtttgtatgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4050

Protein Analysis

117

Amino Acids

13.42

Weight (kDa)

4.75

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 107
AcsI RAATTY 1 cut(s) 131
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 1 cut(s) 265
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 2 cut(s) 35, 81
AluBI AGCT 1 cut(s) 255
AluI AGCT 1 cut(s) 255
Alw21I GWGCWC 1 cut(s) 23
Alw26I GTCTC 3 cut(s) 63, 152, 201
ApeKI GCWGC 1 cut(s) 111
ApoI RAATTY 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 123
BcoDI GTCTC 3 cut(s) 63, 152, 201
BfaI CTAG 1 cut(s) 24
BisI GCNGC 1 cut(s) 112
BlsI GCNGC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 161
BmsI GCATC 1 cut(s) 78
BpmI CTGGAG 1 cut(s) 37
Bsa29I ATCGAT 1 cut(s) 309
BsaBI GATNNNNATC 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 96
BsaI GGTCTC 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse8I GATNNNNATC 1 cut(s) 68
BseCI ATCGAT 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 100
BseJI GATNNNNATC 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 123
BshVI ATCGAT 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 3 cut(s) 63, 152, 201
BsmI GAATGC 1 cut(s) 244
Bso31I GGTCTC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 23
Bsp143I GATC 1 cut(s) 306
BspACI CCGC 1 cut(s) 107
BspCNI CTCAG 1 cut(s) 73
BspDI ATCGAT 1 cut(s) 309
BspLI GGNNCC 1 cut(s) 161
BspTNI GGTCTC 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 1 cut(s) 306
BssNI GRCGYC 1 cut(s) 96
Bst4CI ACNGT 2 cut(s) 47, 146
Bst6I CTCTTC 1 cut(s) 300
BstACI GRCGYC 1 cut(s) 96
BstC8I GCNNGC 2 cut(s) 109, 284
BstDEI CTNAG 2 cut(s) 60, 260
BstDSI CCRYGG 1 cut(s) 100
BstKTI GATC 1 cut(s) 309
BstMAI GTCTC 3 cut(s) 63, 152, 201
BstMBI GATC 1 cut(s) 306
BstMWI GCNNNNNNNGC 2 cut(s) 104, 117
BstV1I GCAGC 1 cut(s) 123
Bsu15I ATCGAT 1 cut(s) 309
BsuTUI ATCGAT 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 100
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 2 cut(s) 52, 182
Cac8I GCNNGC 2 cut(s) 109, 284
ClaI ATCGAT 1 cut(s) 309
CseI GACGC 1 cut(s) 104
Csp6I GTAC 1 cut(s) 264
CviJI RGCY 3 cut(s) 255, 274, 286
CviKI_1 RGCY 3 cut(s) 255, 274, 286
CviQI GTAC 1 cut(s) 264
DdeI CTNAG 2 cut(s) 60, 260
DpnI GATC 1 cut(s) 308
DpnII GATC 1 cut(s) 306
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 152
FaiI YATR 4 cut(s) 249, 326, 328, 348
FauI CCCGC 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 112
Fsp4HI GCNGC 1 cut(s) 112
FspBI CTAG 1 cut(s) 24
GluI GCNGC 1 cut(s) 112
GsuI CTGGAG 1 cut(s) 37
HgaI GACGC 1 cut(s) 104
Hin1I GRCGYC 1 cut(s) 96
HinfI GANTC 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 7, 63
Hpy188III TCNNGA 6 cut(s) 16, 128, 157, 198, 218, 299
HpyCH4III ACNGT 2 cut(s) 47, 146
HpyCH4V TGCA 1 cut(s) 242
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 117
HpyF3I CTNAG 2 cut(s) 60, 260
Hsp92I GRCGYC 1 cut(s) 96
Kzo9I GATC 1 cut(s) 306
LmnI GCTCC 2 cut(s) 18, 331
LpnPI CCDG 6 cut(s) 141, 142, 176, 218, 296, 312
Lsp1109I GCAGC 1 cut(s) 123
LweI GCATC 1 cut(s) 78
MaeI CTAG 1 cut(s) 24
MalI GATC 1 cut(s) 308
MboI GATC 1 cut(s) 306
MboII GAAGA 2 cut(s) 69, 287
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 215
MnlI CCTC 2 cut(s) 303, 331
Mva1269I GAATGC 1 cut(s) 244
MwoI GCNNNNNNNGC 2 cut(s) 104, 117
NdeII GATC 1 cut(s) 306
NlaIV GGNNCC 1 cut(s) 161
PctI GAATGC 1 cut(s) 244
PfeI GAWTC 1 cut(s) 52
PkrI GCNGC 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 161
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
SatI GCNGC 1 cut(s) 112
Sau3AI GATC 1 cut(s) 306
SduI GDGCHC 1 cut(s) 23
SetI ASST 2 cut(s) 226, 257
SfaNI GCATC 1 cut(s) 78
Sse9I AATT 1 cut(s) 131
SsiI CCGC 1 cut(s) 107
SspMI CTAG 1 cut(s) 24
TaaI ACNGT 2 cut(s) 47, 146
TaqI TCGA 3 cut(s) 199, 217, 309
TasI AATT 1 cut(s) 131
TfiI GAWTC 1 cut(s) 52
TscAI CASTG 2 cut(s) 52, 182
TseI GCWGC 1 cut(s) 111
TspRI CASTG 2 cut(s) 52, 182
XapI RAATTY 1 cut(s) 131
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.