Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003996

Physical Location & Seq

Genomic Coordinates Forward (+)

11061071 .. 11063817

Gene Structure 2747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g12580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGATTTAGGGTTTTGGTGGACGAGTTTGAGCTTGGCCACTTGTAGATATCTTCCCTCTTGGGGCTCTGCCATTTTCACATGCATGGGAGGCTGTCTTGGATGCTGTAGCCAACCCCGACTACTTATTCCTGTCGACGAGCCATCAAACGGACTGAGAATTCAAGCTCAATCAGTGAGAAAAAATAGCATATCAGAGGATTTCTGGAGCACTAGCACAATTGAAATGGAGAACAATGGAATCCAGTTTCAGAAAAGCATCTCATCAATTAGCACTTCAAACCCCCTTGATTCCCACGGTACTTCTGGCAGCACAAGCAGTACACCTGAATTTGTAAATCATGGTCTTTTACTCTGGAACCAGACGAGGAATCTGTGGCTTGCAAATAAACAGCCTCAACGCCAGACACAACTTCGAGAACCTAGAATAAGTTGGAACGCCACTTACGAGAGCTTACTCAGTACCAACAAGCCTTTTCGCCAGCCGATCCCTCTTCCTGAAATGATCGATTTTCTCGTCGATATTTGGGAGCAAGATGGTTTGTATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4050

Protein Analysis

184

Amino Acids

20.71

Weight (kDa)

5.15

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15350 AT1G15350 AT1G15350 AT1G15350 AT1G15350 AT1G15350
fragaria_vesca	FvH4_2g29110 FvH4_2g29110 FvH4_2g29110 FvH4_2g29110
malus_domestica	MD08G1149800.v1.1 MD15G1125100.v1.1
prunus_persica	Prupe.1G480600_v2.0.a1 Prupe.1G480600_v2.0.a1 Prupe.1G480600_v2.0.a1 Prupe.1G480600_v2.0.a1 Prupe.1G480600_v2.0.a1
pyrus_communis	pycom08g12580 pycom15g11270
rosa_chinensis	RchiOBHm_Chr6g0297991
rosa_laevigata	RLG00000011545
rosa_multiflora	Rmu_sc0002800.1_g000024
rosa_roxburghii	Rroxscaffold_7G00170020 Rroxscaffold_7G00178850
rosa_rugosa	Rorug06G0277500 Rorug06G0277500 Rorug06G0277600 Rorug06G0277700
rosa_samantha	Rh6AG388100 Rh6BG396300 Rh6CG402300 Rh6DG388500
rosa_wichuraiana	Rw6G033870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	135
AclWI	GGATC	1 cut(s)	481
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	2 cut(s)	159, 329
AfaI	GTAC	3 cut(s)	301, 322, 463
AfiI	CCNNNNNNNGG	2 cut(s)	62, 149
AgsI	TTSAA	3 cut(s)	164, 224, 279
AluBI	AGCT	3 cut(s)	33, 167, 453
AluI	AGCT	3 cut(s)	33, 167, 453
Alw21I	GWGCWC	1 cut(s)	212
AlwI	GGATC	1 cut(s)	481
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	1 cut(s)	309
ApoI	RAATTY	2 cut(s)	159, 329
BalI	TGGCCA	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	2 cut(s)	151, 530
BfaI	CTAG	2 cut(s)	213, 423
BfmI	CTRYAG	1 cut(s)	106
BisI	GCNGC	1 cut(s)	310
BlsI	GCNGC	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	359
BmsI	GCATC	2 cut(s)	92, 267
BpmI	CTGGAG	1 cut(s)	226
Bsa29I	ATCGAT	1 cut(s)	507
BsaJI	CCNNGG	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 149
Bse1I	ACTGG	1 cut(s)	244
BseCI	ATCGAT	1 cut(s)	507
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	1 cut(s)	107
BseLI	CCNNNNNNNGG	2 cut(s)	62, 149
BseMII	CTCAG	2 cut(s)	146, 472
BseNI	ACTGG	1 cut(s)	244
BseXI	GCAGC	1 cut(s)	321
BshFI	GGCC	1 cut(s)	38
BshVI	ATCGAT	1 cut(s)	507
BsiHKAI	GWGCWC	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	62, 149
BsnI	GGCC	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	68, 212
Bsp143I	GATC	2 cut(s)	486, 504
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	2 cut(s)	147, 471
BspDI	ATCGAT	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	359
BspPI	GGATC	1 cut(s)	481
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	2 cut(s)	486, 504
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	1 cut(s)	498
BstC8I	GCNNGC	2 cut(s)	381, 482
BstDEI	CTNAG	2 cut(s)	155, 458
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	1 cut(s)	107
BstKTI	GATC	2 cut(s)	489, 507
BstMBI	GATC	2 cut(s)	486, 504
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 315
BstNSI	RCATGY	1 cut(s)	84
BstSFI	CTRYAG	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	321
Bsu15I	ATCGAT	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	38
BsuTUI	ATCGAT	1 cut(s)	507
BtgI	CCRYGG	1 cut(s)	295
BtsCI	GGATG	1 cut(s)	107
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	2 cut(s)	381, 482
ClaI	ATCGAT	1 cut(s)	507
Csp6I	GTAC	3 cut(s)	300, 321, 462
CviAII	CATG	3 cut(s)	81, 85, 341
CviQI	GTAC	3 cut(s)	300, 321, 462
DdeI	CTNAG	2 cut(s)	155, 458
DpnI	GATC	2 cut(s)	488, 506
DpnII	GATC	2 cut(s)	486, 504
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	68
Eco32I	GATATC	1 cut(s)	50
EcoRI	GAATTC	1 cut(s)	159
EcoRV	GATATC	1 cut(s)	50
EcoT22I	ATGCAT	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	68
FaeI	CATG	3 cut(s)	84, 88, 344
FaiI	YATR	5 cut(s)	82, 86, 191, 342, 546
FatI	CATG	3 cut(s)	80, 84, 340
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	1 cut(s)	310
FokI	GGATG	1 cut(s)	114
FriOI	GRGCYC	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	310
FspBI	CTAG	2 cut(s)	213, 423
GluI	GCNGC	1 cut(s)	310
GsuI	CTGGAG	1 cut(s)	226
HaeIII	GGCC	1 cut(s)	38
Hin1II	CATG	3 cut(s)	84, 88, 344
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	3 cut(s)	240, 290, 370
Hpy166II	GTNNAC	3 cut(s)	21, 136, 323
Hpy188I	TCNGA	2 cut(s)	196, 252
Hpy188III	TCNNGA	4 cut(s)	205, 355, 416, 497
Hpy8I	GTNNAC	3 cut(s)	21, 136, 323
Hpy99I	CGWCG	2 cut(s)	140, 521
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	2 cut(s)	84, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 315
HpyF3I	CTNAG	2 cut(s)	155, 458
Hsp92II	CATG	3 cut(s)	84, 88, 344
Kzo9I	GATC	2 cut(s)	486, 504
LmnI	GCTCC	2 cut(s)	207, 529
Lsp1109I	GCAGC	1 cut(s)	321
LweI	GCATC	2 cut(s)	92, 267
MaeI	CTAG	2 cut(s)	213, 423
MalI	GATC	2 cut(s)	488, 506
MboI	GATC	2 cut(s)	486, 504
MboII	GAAGA	2 cut(s)	44, 485
MfeI	CAATTG	1 cut(s)	219
MhlI	GDGCHC	2 cut(s)	68, 212
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	4 cut(s)	159, 219, 267, 329
MluNI	TGGCCA	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	413
MnlI	CCTC	6 cut(s)	67, 83, 190, 360, 405, 501
Mox20I	TGGCCA	1 cut(s)	38
Mph1103I	ATGCAT	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	38
MunI	CAATTG	1 cut(s)	219
MwoI	GCNNNNNNNGC	2 cut(s)	90, 315
NdeII	GATC	2 cut(s)	486, 504
NlaIII	CATG	3 cut(s)	84, 88, 344
NlaIV	GGNNCC	1 cut(s)	359
NsiI	ATGCAT	1 cut(s)	86
NspI	RCATGY	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	2 cut(s)	444, 513
PfeI	GAWTC	3 cut(s)	240, 290, 370
PkrI	GCNGC	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	359
PsrI	GAACNNNNNNTAC	2 cut(s)	428, 460
RsaI	GTAC	3 cut(s)	301, 322, 463
RsaNI	GTAC	3 cut(s)	300, 321, 462
RseI	CAYNNNNRTG	1 cut(s)	83
SalI	GTCGAC	1 cut(s)	134
SatI	GCNGC	1 cut(s)	310
Sau3AI	GATC	2 cut(s)	486, 504
SduI	GDGCHC	2 cut(s)	68, 212
SetI	ASST	5 cut(s)	35, 169, 328, 424, 455
SfaNI	GCATC	2 cut(s)	92, 267
SfcI	CTRYAG	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	83
Sse9I	AATT	4 cut(s)	159, 219, 267, 329
SspMI	CTAG	2 cut(s)	213, 423
TaaI	ACNGT	1 cut(s)	299
TaqI	TCGA	4 cut(s)	135, 415, 507, 519
TasI	AATT	4 cut(s)	159, 219, 267, 329
TatI	WGTACW	1 cut(s)	320
TfiI	GAWTC	3 cut(s)	240, 290, 370
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	1 cut(s)	309
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	1 cut(s)	180
XapI	RAATTY	2 cut(s)	159, 329
XceI	RCATGY	1 cut(s)	84
XcmI	CCANNNNNNNNNTGG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	2 cut(s)	213, 423
Zsp2I	ATGCAT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.