Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008007

Physical Location & Seq

Genomic Coordinates Reverse (-)

23101890 .. 23104916

Gene Structure 3027 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g29850.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGAGGGAAGTAAAGTCGGAAGCTTTGAAAATGGGAGTACGAGCGAGGGTCGGCCTCCGAACCCGGCGACGTACTGGCGGTGCTACGGCCGCGCCGACGGTGTTCCGGCGTCCCCGTGTAAGAAGACTCTTGTTCGTCACGCCTCTCTTATGAGGGCGAAGGGGTCAGACGTTACTGTTGAACTAGGAGTTGAAGAAGAGAAGTATGAGTCAAAGTTCATTCCAATTGTGCGCTCTGGAGCGTGGGCCGACATTGGTTCTCGATCAAAAATGGAAGATGTTTATGTCTGTGTGGATGATTTTATGCACGATTATGGCCTCAAGAGTTTTACGGATGGCCCAAGTGCCTTCTATGGGGTGTTTGATGGACATGGAGGGAAGCATGCCGCTGACTTTGCTTGCTCAAATTTGCCGAAGTTCATTTTTGAGGATGAAGACTTCCCTTCTGATATTGAAAGGGTTATTAGTTCAGCATTTCTGCAAACTGACACTGCCTTTCAAGAAGCCTGCACTTTGGATGCTACACTTGCTTCTGGCACCACTGCGTTGACAGCTCTTCTTGTTGGAAGGTTGTTGGTGGTAGCTAATGCTGGAGACTGTCGAGCAGTGCTTTGCCGCCGTGGAAAAGCGATTGAAATGTCAAGGGATCACAAACCTATATGCAGCAAAGAGATAAAACGGGTCGAGGCATGTGGAGGATCTGTGTATGATGGCTACCTTAATGGGCAGCTGAATGTTACTCGCGCTTTAGGAGACTGGCATATGGAAGGATTGAAGAGCAGGGATGGTGGGCCACTCAGTGCAGAGCCAGAGCTTAAGACTCTAAAACTAACAGAGGAAGACGAGTTCCTTATCATCGGCTGTGATGGGATATGGGATGTGTTTAGGAGTCAAAATGCAGTGGATTTCGCTCGTCGCAGGCTTCAGGAGCACAATGACCCAGCCACATGTAGCAAGGATATAGTTGATGAGGCTTTGAAGAGGAAGAGTGGCGACAATTTGGCTGCTGTCGTAGTTTGCTTCCAACAGCAGCCTCCACCCAATTTGATTGCCCCTCGCTCAAGAGTGCAGAGGAGCTTCTCGGCAGAAGGGTTGAGGGAGTTGCAAAGCTTCTTGGATGACTTGAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002697 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0031347 GO:0032101 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0050688 GO:0050789 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

378

Amino Acids

41.35

Weight (kDa)

5.35

Isoelectric Point (pI)

50.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	47 - 264	6.8e-66	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25620 AT2G25620
fragaria_vesca	FvH4_2g29850 FvH4_2g29850 FvH4_2g29850
malus_domestica	MD08G1140800.v1.1 MD15G1117700.v1.1
prunus_persica	Prupe.1G471100_v2.0.a1 Prupe.1G471100_v2.0.a1
pyrus_communis	pycom08g11880 pycom15g10610
rosa_chinensis	RchiOBHm_Chr6g0298921
rosa_laevigata	RLG00000011473
rosa_multiflora	Rmu_co8054612.1_g000001 Rmu_ssc0000397.1_g000049 Rmu_ssc0000397.1_g000050
rosa_roxburghii	Rroxscaffold_7G00169210
rosa_rugosa	Rorug06G0283600 Rorug06G0283700
rosa_samantha	Rh6AG395500 Rh6BG403600 Rh6CG409300 Rh6DG396300
rosa_wichuraiana	Rw6G034610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	536
AccII	CGCG	2 cut(s)	93, 744
AciI	CCGC	4 cut(s)	79, 91, 387, 616
AclWI	GGATC	2 cut(s)	654, 706
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	406
AcuI	CTGAAG	1 cut(s)	908
AcyI	GRCGYC	1 cut(s)	110
AdeI	CACNNNGTG	1 cut(s)	800
AfaI	GTAC	2 cut(s)	40, 74
AfiI	CCNNNNNNNGG	1 cut(s)	354
AflII	CTTAAG	1 cut(s)	815
AflIII	ACRYGT	1 cut(s)	947
AgsI	TTSAA	9 cut(s)	29, 182, 194, 455, 500, 635, 775, 979, 1126
AloI	GAACNNNNNNTCC	2 cut(s)	830, 862
AluBI	AGCT	7 cut(s)	24, 554, 584, 730, 814, 1077, 1110
AluI	AGCT	7 cut(s)	24, 554, 584, 730, 814, 1077, 1110
Alw21I	GWGCWC	1 cut(s)	933
Alw26I	GTCTC	2 cut(s)	588, 747
AlwI	GGATC	2 cut(s)	654, 706
AoxI	GGCC	6 cut(s)	53, 88, 246, 316, 337, 791
ApeKI	GCWGC	4 cut(s)	663, 727, 1004, 1030
ApoI	RAATTY	1 cut(s)	406
AspLEI	GCGC	3 cut(s)	95, 234, 746
AspS9I	GGNCC	3 cut(s)	246, 338, 791
AsuC2I	CCSGG	1 cut(s)	65
BanI	GGYRCC	1 cut(s)	536
BbsI	GAAGAC	3 cut(s)	131, 441, 846
Bbv12I	GWGCWC	1 cut(s)	933
BbvI	GCAGC	4 cut(s)	675, 739, 991, 1042
BccI	CCATC	5 cut(s)	329, 359, 704, 779, 860
BceAI	ACGGC	2 cut(s)	103, 603
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	2 cut(s)	588, 747
BfaI	CTAG	1 cut(s)	185
BfrI	CTTAAG	1 cut(s)	815
BisI	GCNGC	7 cut(s)	91, 387, 616, 664, 728, 1005, 1031
BlsI	GCNGC	7 cut(s)	92, 388, 617, 665, 729, 1006, 1032
Bme1390I	CCNGG	1 cut(s)	65
BmgT120I	GGNCC	3 cut(s)	246, 338, 791
BmiI	GGNNCC	1 cut(s)	538
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	508
BpiI	GAAGAC	3 cut(s)	131, 441, 846
BpmI	CTGGAG	2 cut(s)	258, 612
BpuEI	CTTGAG	2 cut(s)	305, 1045
BpuMI	CCSGG	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	619
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
Bse1I	ACTGG	2 cut(s)	80, 761
BseDI	CCNNGG	1 cut(s)	619
BseGI	GGATG	7 cut(s)	301, 340, 436, 523, 790, 883, 1123
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	811
BseNI	ACTGG	2 cut(s)	80, 761
BseRI	GAGGAG	1 cut(s)	1087
BseX3I	CGGCCG	1 cut(s)	88
BseXI	GCAGC	4 cut(s)	675, 739, 991, 1042
BseYI	CCCAGC	1 cut(s)	940
BsgI	GTGCAG	3 cut(s)	493, 822, 1088
Bsh1236I	CGCG	2 cut(s)	93, 744
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	6 cut(s)	55, 90, 248, 318, 339, 793
BshNI	GGYRCC	1 cut(s)	536
BsiEI	CGRYCG	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	933
BsiSI	CCGG	2 cut(s)	65, 107
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	354
BsmAI	GTCTC	2 cut(s)	588, 747
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	6 cut(s)	55, 90, 248, 318, 339, 793
Bsp1286I	GDGCHC	1 cut(s)	933
Bsp143I	GATC	3 cut(s)	263, 646, 698
BspACI	CCGC	4 cut(s)	79, 91, 387, 616
BspANI	GGCC	6 cut(s)	55, 90, 248, 318, 339, 793
BspCNI	CTCAG	1 cut(s)	810
BspFNI	CGCG	2 cut(s)	93, 744
BspLI	GGNNCC	1 cut(s)	538
BspPI	GGATC	2 cut(s)	654, 706
BspQI	GCTCTTC	2 cut(s)	561, 770
BspT107I	GGYRCC	1 cut(s)	536
BspTI	CTTAAG	1 cut(s)	815
BsrI	ACTGG	2 cut(s)	80, 761
BssECI	CCNNGG	1 cut(s)	619
BssMI	GATC	3 cut(s)	263, 646, 698
BssNI	GRCGYC	1 cut(s)	110
Bst4CI	ACNGT	3 cut(s)	101, 178, 599
Bst6I	CTCTTC	5 cut(s)	192, 561, 770, 974, 980
BstACI	GRCGYC	1 cut(s)	110
BstAFI	CTTAAG	1 cut(s)	815
BstC8I	GCNNGC	4 cut(s)	384, 400, 508, 920
BstDEI	CTNAG	1 cut(s)	797
BstDSI	CCRYGG	1 cut(s)	619
BstF5I	GGATG	7 cut(s)	301, 340, 436, 523, 790, 883, 1123
BstFNI	CGCG	2 cut(s)	93, 744
BstHHI	GCGC	3 cut(s)	95, 234, 746
BstKTI	GATC	3 cut(s)	266, 649, 701
BstMAI	GTCTC	2 cut(s)	588, 747
BstMBI	GATC	3 cut(s)	263, 646, 698
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	5 cut(s)	90, 395, 527, 551, 928
BstNSI	RCATGY	3 cut(s)	386, 693, 951
BstSCI	CCNGG	1 cut(s)	63
BstUI	CGCG	2 cut(s)	93, 744
BstV1I	GCAGC	4 cut(s)	675, 739, 991, 1042
BstV2I	GAAGAC	3 cut(s)	131, 441, 846
BstX2I	RGATCY	1 cut(s)	698
BstYI	RGATCY	1 cut(s)	698
BstZI	CGGCCG	1 cut(s)	88
BsuRI	GGCC	6 cut(s)	55, 90, 248, 318, 339, 793
BtgI	CCRYGG	1 cut(s)	619
BtsCI	GGATG	7 cut(s)	301, 340, 436, 523, 790, 883, 1123
BtsI	GCAGTG	4 cut(s)	489, 540, 612, 906
BtsIMutI	CAGTG	5 cut(s)	489, 540, 612, 805, 906
Cac8I	GCNNGC	4 cut(s)	384, 400, 508, 920
CfoI	GCGC	3 cut(s)	95, 234, 746
Cfr13I	GGNCC	3 cut(s)	246, 338, 791
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	2 cut(s)	39, 73
CspCI	CAANNNNNGTGG	2 cut(s)	1026, 1061
CviAII	CATG	4 cut(s)	371, 383, 690, 948
CviQI	GTAC	2 cut(s)	39, 73
DdeI	CTNAG	1 cut(s)	797
DpnI	GATC	3 cut(s)	265, 648, 700
DpnII	GATC	3 cut(s)	263, 646, 698
DraIII	CACNNNGTG	1 cut(s)	800
EaeI	YGGCCR	1 cut(s)	88
EagI	CGGCCG	1 cut(s)	88
Eam1104I	CTCTTC	5 cut(s)	192, 561, 770, 974, 980
EarI	CTCTTC	5 cut(s)	192, 561, 770, 974, 980
EclXI	CGGCCG	1 cut(s)	88
Eco52I	CGGCCG	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	908
FaeI	CATG	4 cut(s)	374, 386, 693, 951
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	4 cut(s)	370, 382, 689, 947
FauNDI	CATATG	1 cut(s)	762
Fnu4HI	GCNGC	7 cut(s)	91, 387, 616, 664, 728, 1005, 1031
FokI	GGATG	7 cut(s)	308, 347, 443, 530, 797, 890, 1130
Fsp4HI	GCNGC	7 cut(s)	91, 387, 616, 664, 728, 1005, 1031
FspBI	CTAG	1 cut(s)	185
GlaI	GCGC	3 cut(s)	94, 233, 745
GluI	GCNGC	7 cut(s)	91, 387, 616, 664, 728, 1005, 1031
GsaI	CCCAGC	1 cut(s)	944
GsuI	CTGGAG	2 cut(s)	258, 612
HaeIII	GGCC	6 cut(s)	55, 90, 248, 318, 339, 793
HapII	CCGG	2 cut(s)	65, 107
HgaI	GACGC	1 cut(s)	99
HhaI	GCGC	3 cut(s)	95, 234, 746
Hin1I	GRCGYC	1 cut(s)	110
Hin1II	CATG	4 cut(s)	374, 386, 693, 951
Hin6I	GCGC	3 cut(s)	93, 232, 744
HinP1I	GCGC	3 cut(s)	93, 232, 744
HincII	GTYRAC	1 cut(s)	549
HindII	GTYRAC	1 cut(s)	549
HindIII	AAGCTT	2 cut(s)	22, 1108
HinfI	GANTC	4 cut(s)	127, 209, 820, 889
HpaII	CCGG	2 cut(s)	65, 107
Hpy166II	GTNNAC	1 cut(s)	549
Hpy188I	TCNGA	4 cut(s)	20, 60, 169, 448
Hpy188III	TCNNGA	6 cut(s)	237, 261, 322, 500, 926, 1062
Hpy8I	GTNNAC	1 cut(s)	549
Hpy99I	CGWCG	3 cut(s)	73, 101, 918
HpyAV	CCTTC	6 cut(s)	154, 358, 453, 561, 761, 1082
HpyCH4III	ACNGT	3 cut(s)	101, 178, 599
HpyCH4IV	ACGT	2 cut(s)	71, 171
HpyCH4V	TGCA	8 cut(s)	307, 481, 510, 663, 803, 899, 1069, 1105
HpyF10VI	GCNNNNNNNGC	5 cut(s)	90, 395, 527, 551, 928
HpyF3I	CTNAG	1 cut(s)	797
HpySE526I	ACGT	2 cut(s)	71, 171
Hsp92I	GRCGYC	1 cut(s)	110
Hsp92II	CATG	4 cut(s)	374, 386, 693, 951
HspAI	GCGC	3 cut(s)	93, 232, 744
Kzo9I	GATC	3 cut(s)	263, 646, 698
LguI	GCTCTTC	2 cut(s)	561, 770
LmnI	GCTCC	3 cut(s)	239, 928, 1074
Lsp1109I	GCAGC	4 cut(s)	675, 739, 991, 1042
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	2 cut(s)	71, 171
MaeIII	GTNAC	3 cut(s)	137, 172, 736
MalI	GATC	3 cut(s)	265, 648, 700
MboI	GATC	3 cut(s)	263, 646, 698
MfeI	CAATTG	1 cut(s)	225
MflI	RGATCY	1 cut(s)	698
MhlI	GDGCHC	1 cut(s)	933
MluCI	AATT	4 cut(s)	225, 406, 997, 1042
MlyI	GAGTC	4 cut(s)	121, 218, 814, 898
MmeI	TCCRAC	2 cut(s)	544, 1048
MseI	TTAA	2 cut(s)	720, 816
MslI	CAYNNNNRTG	1 cut(s)	312
MspA1I	CMGCKG	2 cut(s)	389, 730
MspCI	CTTAAG	1 cut(s)	815
MspI	CCGG	2 cut(s)	65, 107
MspR9I	CCNGG	1 cut(s)	65
MunI	CAATTG	1 cut(s)	225
MvnI	CGCG	2 cut(s)	93, 744
MwoI	GCNNNNNNNGC	5 cut(s)	90, 395, 527, 551, 928
NciI	CCSGG	1 cut(s)	65
NdeI	CATATG	1 cut(s)	762
NdeII	GATC	3 cut(s)	263, 646, 698
NlaIII	CATG	4 cut(s)	374, 386, 693, 951
NlaIV	GGNNCC	1 cut(s)	538
NmeAIII	GCCGAG	1 cut(s)	1061
NmuCI	GTSAC	1 cut(s)	137
NspI	RCATGY	3 cut(s)	386, 693, 951
PaeI	GCATGC	1 cut(s)	386
PciI	ACATGT	1 cut(s)	947
PciSI	GCTCTTC	2 cut(s)	561, 770
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PkrI	GCNGC	7 cut(s)	92, 388, 617, 665, 729, 1006, 1032
PleI	GAGTC	4 cut(s)	121, 217, 814, 897
PpsI	GAGTC	4 cut(s)	121, 217, 814, 897
PscI	ACATGT	1 cut(s)	947
PspFI	CCCAGC	1 cut(s)	940
PspN4I	GGNNCC	1 cut(s)	538
PspPI	GGNCC	3 cut(s)	246, 338, 791
PsuI	RGATCY	1 cut(s)	698
PvuII	CAGCTG	1 cut(s)	730
RsaI	GTAC	2 cut(s)	40, 74
RsaNI	GTAC	2 cut(s)	39, 73
RseI	CAYNNNNRTG	1 cut(s)	312
SapI	GCTCTTC	2 cut(s)	561, 770
SaqAI	TTAA	2 cut(s)	720, 816
SatI	GCNGC	7 cut(s)	91, 387, 616, 664, 728, 1005, 1031
Sau3AI	GATC	3 cut(s)	263, 646, 698
Sau96I	GGNCC	3 cut(s)	246, 338, 791
SchI	GAGTC	4 cut(s)	121, 218, 814, 898
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	933
SfaNI	GCATC	1 cut(s)	508
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	3 cut(s)	320, 815, 1060
SmoI	CTYRAG	3 cut(s)	320, 815, 1060
SphI	GCATGC	1 cut(s)	386
Sse9I	AATT	4 cut(s)	225, 406, 997, 1042
SsiI	CCGC	4 cut(s)	79, 91, 387, 616
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	63
TaaI	ACNGT	3 cut(s)	101, 178, 599
TaiI	ACGT	2 cut(s)	74, 174
TaqI	TCGA	3 cut(s)	262, 601, 684
TasI	AATT	4 cut(s)	225, 406, 997, 1042
TauI	GCSGC	3 cut(s)	93, 389, 618
Tru1I	TTAA	2 cut(s)	720, 816
Tru9I	TTAA	2 cut(s)	720, 816
TscAI	CASTG	5 cut(s)	496, 547, 612, 805, 906
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	4 cut(s)	663, 727, 1004, 1030
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	3 cut(s)	208, 409, 447
TspGWI	ACGGA	1 cut(s)	347
TspRI	CASTG	5 cut(s)	496, 547, 612, 805, 906
Vha464I	CTTAAG	1 cut(s)	815
XapI	RAATTY	1 cut(s)	406
XceI	RCATGY	3 cut(s)	386, 693, 951
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.