Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008007

Physical Location & Seq

Genomic Coordinates Forward (+)

39207651 .. 39210791

Gene Structure 3141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G471100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGAGGGAAGTAAAGTTGAAAATGGAAGCTCAAGCGAGGGCCGGCCTCCCAACCCTCTCGCCGGGGCGTACTGGCAGTGCTTTAGCCATGACGGCGTTCCTGTGCTTTGCAAGAAATCGCTTGTTCGACACCCATCTCTTATGAAGACAAAGACATCTGACATTAAAGTTGAACCGGGAGTTCAAGCAGAGGAATTTGAATCTAAGTTCATTCCAGTTGTCCGGTCCGGAGCATGGGCTGACATAGGGTCTCGTCCCAGCATGGAAGATGTATATGTCTGTGTTGACAATTTTATGCACGATTATGGGCTCAAGAATCGTACTGATGGCCCAAGTGCCTTTTATGGGGTGTTTGATGGACATGGAGGAAAGCATGCTGCTGACTTTGCTTGCTTTCATTTGCCAAAGTTCATTATTGAGAATGAAGACTTCCCTAGGGATATTGAAAGGGTTGTCACTTCAGCCTTTCTTCATACTGACACTGCCTTTGAAGAAGCTTGCACCTTGGATGCCACCCTTGCCTCTGGTACCACTGCATTGACCGCTCTTCTCATTGGAAGGTTGTTGGTGGTAGCAAATGCTGGAGATTGTCGAGCAGTGCTGTGCCGCCGTGGCAAAGCAATTGAAATGTCAAGAGATCACAAACCGATTTGCGGCAAAGAGAAACAACGCATCGAGGCATCTGGAGGATATGTGTATGATGGTTACCTTAATGGACAGCTTAACGTTGCTCGTGCATTGGGAGACTGGCATATGGAAGGGATGAAGGGCAGGGACGGTGGGCCACTCAGTGCAGAGCCAGAATTTATGACTGCAAAACTTACAGAGGATGATGAGTTCCTTATCATTGGCTGTGACGGGATCTGGGATGTGTTTATGAGTCAAAATGCTGTGGATTTTGCTCGGCGCAGGCTTCAGGAGCACAATGACCCAGCCACATGTAGCAAGGATTTGGTTGATGAGGCTTTGAAGAGGAAGAGTGGGGACAATTTGGCTGTTGTCGTAGTCTGCTTCCAACCACAGCGTCCACCTAACCTGATTGCCCCTCGCTCAAGAGTGCAGAGGAGTTTTTCTGCTGAAGGGTTGAGGGAGTTGCAAAGCTTCTTGGATGACTTGAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002697 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0031347 GO:0032101 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0050688 GO:0050789 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

375

Amino Acids

41.21

Weight (kDa)

5.55

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25620 AT2G25620
fragaria_vesca	FvH4_2g29850 FvH4_2g29850 FvH4_2g29850
malus_domestica	MD08G1140800.v1.1 MD15G1117700.v1.1
prunus_persica	Prupe.1G471100_v2.0.a1 Prupe.1G471100_v2.0.a1
pyrus_communis	pycom08g11880 pycom15g10610
rosa_chinensis	RchiOBHm_Chr6g0298921
rosa_laevigata	RLG00000011473
rosa_multiflora	Rmu_co8054612.1_g000001 Rmu_ssc0000397.1_g000049 Rmu_ssc0000397.1_g000050
rosa_roxburghii	Rroxscaffold_7G00169210
rosa_rugosa	Rorug06G0283600 Rorug06G0283700
rosa_samantha	Rh6AG395500 Rh6BG403600 Rh6CG409300 Rh6DG396300
rosa_wichuraiana	Rw6G034610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	527
AccB1I	GGYRCC	1 cut(s)	527
AccBSI	CCGCTC	1 cut(s)	545
AccIII	TCCGGA	1 cut(s)	227
AciI	CCGC	3 cut(s)	543, 607, 654
AclI	AACGTT	1 cut(s)	726
AclWI	GGATC	1 cut(s)	869
AcsI	RAATTY	2 cut(s)	194, 803
AcuI	CTGAAG	3 cut(s)	444, 899, 1098
AdeI	CACNNNGTG	1 cut(s)	791
AfaI	GTAC	3 cut(s)	71, 322, 529
AfiI	CCNNNNNNNGG	4 cut(s)	62, 234, 345, 653
AflIII	ACRYGT	1 cut(s)	938
AgsI	TTSAA	9 cut(s)	20, 173, 185, 200, 446, 491, 626, 970, 1117
AhdI	GACNNNNNGTC	1 cut(s)	247
AloI	GAACNNNNNNTCC	2 cut(s)	821, 853
AluBI	AGCT	4 cut(s)	30, 497, 721, 1101
AluI	AGCT	4 cut(s)	30, 497, 721, 1101
Alw21I	GWGCWC	1 cut(s)	924
Alw26I	GTCTC	2 cut(s)	255, 738
AlwI	GGATC	1 cut(s)	869
Aor13HI	TCCGGA	1 cut(s)	227
AoxI	GGCC	4 cut(s)	40, 44, 328, 782
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	2 cut(s)	194, 803
ArsI	GACNNNNNNTTYG	2 cut(s)	470, 502
Asp718I	GGTACC	1 cut(s)	527
AspA2I	CCTAGG	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	909
AspS9I	GGNCC	4 cut(s)	40, 225, 329, 782
AsuC2I	CCSGG	2 cut(s)	64, 177
AvaII	GGWCC	1 cut(s)	225
AvrII	CCTAGG	1 cut(s)	434
BanI	GGYRCC	1 cut(s)	527
BanII	GRGCYC	1 cut(s)	312
BauI	CACGAG	1 cut(s)	732
BbsI	GAAGAC	2 cut(s)	152, 432
Bbv12I	GWGCWC	1 cut(s)	924
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	4 cut(s)	142, 320, 350, 695
BceAI	ACGGC	2 cut(s)	109, 594
BcnI	CCSGG	2 cut(s)	64, 177
BcoDI	GTCTC	2 cut(s)	255, 738
BfaI	CTAG	1 cut(s)	435
BglI	GCCNNNNNGGC	2 cut(s)	93, 612
BisI	GCNGC	3 cut(s)	378, 607, 655
BlnI	CCTAGG	1 cut(s)	434
BlsI	GCNGC	3 cut(s)	379, 608, 656
Bme1390I	CCNGG	2 cut(s)	64, 177
Bme18I	GGWCC	1 cut(s)	225
BmeRI	GACNNNNNGTC	1 cut(s)	247
BmgT120I	GGNCC	4 cut(s)	40, 225, 329, 782
BmiI	GGNNCC	1 cut(s)	529
BmrFI	CCNGG	2 cut(s)	64, 177
BmsI	GCATC	3 cut(s)	499, 681, 689
BpiI	GAAGAC	2 cut(s)	152, 432
BpmI	CTGGAG	2 cut(s)	603, 705
BpuEI	CTTGAG	3 cut(s)	16, 296, 1036
BpuMI	CCSGG	2 cut(s)	64, 177
BsaI	GGTCTC	1 cut(s)	255
BsaJI	CCNNGG	4 cut(s)	63, 434, 504, 610
BsaWI	WCCGGW	2 cut(s)	222, 227
BsaXI	ACNNNNNCTCC	2 cut(s)	678, 708
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 234, 345, 653
Bse118I	RCCGGY	1 cut(s)	42
Bse1I	ACTGG	3 cut(s)	77, 215, 752
BseAI	TCCGGA	1 cut(s)	227
BseDI	CCNNGG	4 cut(s)	63, 434, 504, 610
BseGI	GGATG	5 cut(s)	514, 768, 835, 874, 1114
BseLI	CCNNNNNNNGG	4 cut(s)	62, 234, 345, 653
BseMII	CTCAG	1 cut(s)	802
BseNI	ACTGG	3 cut(s)	77, 215, 752
BseRI	GAGGAG	1 cut(s)	1078
BseXI	GCAGC	1 cut(s)	364
BseYI	CCCAGC	2 cut(s)	257, 931
BsgI	GTGCAG	2 cut(s)	813, 1079
BshFI	GGCC	4 cut(s)	42, 46, 330, 784
BshNI	GGYRCC	1 cut(s)	527
BsiHKAI	GWGCWC	1 cut(s)	924
BsiSI	CCGG	5 cut(s)	43, 63, 176, 223, 228
BslFI	GGGAC	3 cut(s)	240, 788, 998
BslI	CCNNNNNNNGG	4 cut(s)	62, 234, 345, 653
BsmAI	GTCTC	2 cut(s)	255, 738
BsmFI	GGGAC	3 cut(s)	240, 788, 998
BsnI	GGCC	4 cut(s)	42, 46, 330, 784
Bso31I	GGTCTC	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	312, 924
Bsp13I	TCCGGA	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	637, 861
BspACI	CCGC	3 cut(s)	543, 607, 654
BspANI	GGCC	4 cut(s)	42, 46, 330, 784
BspCNI	CTCAG	1 cut(s)	801
BspEI	TCCGGA	1 cut(s)	227
BspLI	GGNNCC	1 cut(s)	529
BspPI	GGATC	1 cut(s)	869
BspQI	GCTCTTC	1 cut(s)	552
BspT107I	GGYRCC	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	255
BsrBI	CCGCTC	1 cut(s)	545
BsrFI	RCCGGY	1 cut(s)	42
BsrI	ACTGG	3 cut(s)	77, 215, 752
BssAI	RCCGGY	1 cut(s)	42
BssECI	CCNNGG	4 cut(s)	63, 434, 504, 610
BssMI	GATC	2 cut(s)	637, 861
BssSI	CACGAG	1 cut(s)	732
BssT1I	CCWWGG	2 cut(s)	434, 504
Bst2BI	CACGAG	1 cut(s)	732
Bst4CI	ACNGT	1 cut(s)	779
Bst6I	CTCTTC	3 cut(s)	552, 965, 971
BstC8I	GCNNGC	5 cut(s)	44, 375, 391, 499, 911
BstDEI	CTNAG	2 cut(s)	204, 788
BstDSI	CCRYGG	1 cut(s)	610
BstEII	GGTNACC	1 cut(s)	704
BstF5I	GGATG	5 cut(s)	514, 768, 835, 874, 1114
BstHHI	GCGC	1 cut(s)	909
BstKTI	GATC	2 cut(s)	640, 864
BstMAI	GTCTC	2 cut(s)	255, 738
BstMBI	GATC	2 cut(s)	637, 861
BstMWI	GCNNNNNNNGC	6 cut(s)	93, 386, 518, 542, 612, 919
BstNSI	RCATGY	2 cut(s)	377, 942
BstPI	GGTNACC	1 cut(s)	704
BstSCI	CCNGG	2 cut(s)	62, 175
BstV1I	GCAGC	1 cut(s)	364
BstV2I	GAAGAC	2 cut(s)	152, 432
BstX2I	RGATCY	1 cut(s)	861
BstYI	RGATCY	1 cut(s)	861
BsuRI	GGCC	4 cut(s)	42, 46, 330, 784
BtgI	CCRYGG	1 cut(s)	610
BtsCI	GGATG	5 cut(s)	514, 768, 835, 874, 1114
BtsI	GCAGTG	4 cut(s)	83, 480, 531, 603
BtsIMutI	CAGTG	5 cut(s)	83, 480, 531, 603, 796
Cac8I	GCNNGC	5 cut(s)	44, 375, 391, 499, 911
CfoI	GCGC	1 cut(s)	909
Cfr10I	RCCGGY	1 cut(s)	42
Cfr13I	GGNCC	4 cut(s)	40, 225, 329, 782
CpoI	CGGWCCG	1 cut(s)	225
CseI	GACGC	1 cut(s)	1013
Csp6I	GTAC	3 cut(s)	70, 321, 528
CspI	CGGWCCG	1 cut(s)	225
CviAII	CATG	6 cut(s)	89, 234, 262, 362, 374, 939
CviQI	GTAC	3 cut(s)	70, 321, 528
DdeI	CTNAG	2 cut(s)	204, 788
DpnI	GATC	2 cut(s)	639, 863
DpnII	GATC	2 cut(s)	637, 861
DraIII	CACNNNGTG	1 cut(s)	791
DriI	GACNNNNNGTC	1 cut(s)	247
Eam1104I	CTCTTC	3 cut(s)	552, 965, 971
Eam1105I	GACNNNNNGTC	1 cut(s)	247
EarI	CTCTTC	3 cut(s)	552, 965, 971
Eco130I	CCWWGG	2 cut(s)	434, 504
Eco24I	GRGCYC	1 cut(s)	312
Eco31I	GGTCTC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	225
Eco57I	CTGAAG	3 cut(s)	444, 899, 1098
Eco91I	GGTNACC	1 cut(s)	704
EcoO65I	GGTNACC	1 cut(s)	704
EcoT14I	CCWWGG	2 cut(s)	434, 504
EcoT38I	GRGCYC	1 cut(s)	312
ErhI	CCWWGG	2 cut(s)	434, 504
FaeI	CATG	6 cut(s)	92, 237, 265, 365, 377, 942
FaqI	GGGAC	3 cut(s)	240, 788, 998
FatI	CATG	6 cut(s)	88, 233, 261, 361, 373, 938
FauNDI	CATATG	1 cut(s)	753
Fnu4HI	GCNGC	3 cut(s)	378, 607, 655
FokI	GGATG	5 cut(s)	521, 775, 842, 881, 1121
FriOI	GRGCYC	1 cut(s)	312
FseI	GGCCGGCC	1 cut(s)	46
Fsp4HI	GCNGC	3 cut(s)	378, 607, 655
FspBI	CTAG	1 cut(s)	435
GlaI	GCGC	1 cut(s)	908
GluI	GCNGC	3 cut(s)	378, 607, 655
GsaI	CCCAGC	2 cut(s)	261, 935
GsuI	CTGGAG	2 cut(s)	603, 705
HaeIII	GGCC	4 cut(s)	42, 46, 330, 784
HapII	CCGG	5 cut(s)	43, 63, 176, 223, 228
HgaI	GACGC	1 cut(s)	1013
HhaI	GCGC	1 cut(s)	909
Hin1II	CATG	6 cut(s)	92, 237, 265, 365, 377, 942
Hin6I	GCGC	1 cut(s)	907
HinP1I	GCGC	1 cut(s)	907
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	2 cut(s)	495, 1099
HinfI	GANTC	3 cut(s)	200, 316, 880
HpaII	CCGG	5 cut(s)	43, 63, 176, 223, 228
Hpy166II	GTNNAC	2 cut(s)	286, 1028
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	6 cut(s)	228, 313, 633, 684, 917, 1053
Hpy8I	GTNNAC	2 cut(s)	286, 1028
HpyAV	CCTTC	4 cut(s)	552, 752, 760, 1073
HpyCH4III	ACNGT	1 cut(s)	779
HpyCH4IV	ACGT	1 cut(s)	726
HpyCH4V	TGCA	9 cut(s)	111, 298, 501, 536, 737, 794, 815, 1060, 1096
HpyF10VI	GCNNNNNNNGC	6 cut(s)	93, 386, 518, 542, 612, 919
HpyF3I	CTNAG	2 cut(s)	204, 788
HpySE526I	ACGT	1 cut(s)	726
Hsp92II	CATG	6 cut(s)	92, 237, 265, 365, 377, 942
HspAI	GCGC	1 cut(s)	907
Kpn2I	TCCGGA	1 cut(s)	227
KpnI	GGTACC	1 cut(s)	531
KroI	GCCGGC	1 cut(s)	42
KroNI	GCCGGC	1 cut(s)	44
Kzo9I	GATC	2 cut(s)	637, 861
LguI	GCTCTTC	1 cut(s)	552
LmnI	GCTCC	2 cut(s)	230, 919
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	3 cut(s)	499, 681, 689
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	1 cut(s)	726
MaeIII	GTNAC	3 cut(s)	454, 704, 854
MalI	GATC	2 cut(s)	639, 863
MbiI	CCGCTC	1 cut(s)	545
MboI	GATC	2 cut(s)	637, 861
MboII	GAAGA	8 cut(s)	157, 278, 437, 461, 503, 539, 982, 988
MfeI	CAATTG	1 cut(s)	621
MflI	RGATCY	1 cut(s)	861
MhlI	GDGCHC	2 cut(s)	312, 924
MluCI	AATT	5 cut(s)	194, 289, 621, 803, 988
MlyI	GAGTC	1 cut(s)	889
MmeI	TCCRAC	1 cut(s)	1039
MroI	TCCGGA	1 cut(s)	227
MroNI	GCCGGC	1 cut(s)	42
MseI	TTAA	3 cut(s)	165, 711, 723
MslI	CAYNNNNRTG	1 cut(s)	303
MspI	CCGG	5 cut(s)	43, 63, 176, 223, 228
MspR9I	CCNGG	2 cut(s)	64, 177
MunI	CAATTG	1 cut(s)	621
MwoI	GCNNNNNNNGC	6 cut(s)	93, 386, 518, 542, 612, 919
NaeI	GCCGGC	1 cut(s)	44
NciI	CCSGG	2 cut(s)	64, 177
NdeI	CATATG	1 cut(s)	753
NdeII	GATC	2 cut(s)	637, 861
NgoMIV	GCCGGC	1 cut(s)	42
NlaIII	CATG	6 cut(s)	92, 237, 265, 365, 377, 942
NlaIV	GGNNCC	1 cut(s)	529
NmeAIII	GCCGAG	1 cut(s)	883
NmuCI	GTSAC	2 cut(s)	454, 854
NspI	RCATGY	2 cut(s)	377, 942
PaeI	GCATGC	1 cut(s)	377
PciI	ACATGT	1 cut(s)	938
PciSI	GCTCTTC	1 cut(s)	552
PdiI	GCCGGC	1 cut(s)	44
PfeI	GAWTC	2 cut(s)	200, 316
PkrI	GCNGC	3 cut(s)	379, 608, 656
PleI	GAGTC	1 cut(s)	888
PpsI	GAGTC	1 cut(s)	888
PscI	ACATGT	1 cut(s)	938
Psp1406I	AACGTT	1 cut(s)	726
PspEI	GGTNACC	1 cut(s)	704
PspFI	CCCAGC	2 cut(s)	257, 931
PspN4I	GGNNCC	1 cut(s)	529
PspPI	GGNCC	4 cut(s)	40, 225, 329, 782
PsuI	RGATCY	1 cut(s)	861
RigI	GGCCGGCC	1 cut(s)	46
RsaI	GTAC	3 cut(s)	71, 322, 529
RsaNI	GTAC	3 cut(s)	70, 321, 528
RseI	CAYNNNNRTG	1 cut(s)	303
Rsr2I	CGGWCCG	1 cut(s)	225
RsrII	CGGWCCG	1 cut(s)	225
SapI	GCTCTTC	1 cut(s)	552
SaqAI	TTAA	3 cut(s)	165, 711, 723
SatI	GCNGC	3 cut(s)	378, 607, 655
Sau3AI	GATC	2 cut(s)	637, 861
Sau96I	GGNCC	4 cut(s)	40, 225, 329, 782
SchI	GAGTC	1 cut(s)	889
ScrFI	CCNGG	2 cut(s)	64, 177
SduI	GDGCHC	2 cut(s)	312, 924
SfaNI	GCATC	3 cut(s)	499, 681, 689
SinI	GGWCC	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	3 cut(s)	31, 311, 1051
SmoI	CTYRAG	3 cut(s)	31, 311, 1051
SphI	GCATGC	1 cut(s)	377
Sse9I	AATT	5 cut(s)	194, 289, 621, 803, 988
SsiI	CCGC	3 cut(s)	543, 607, 654
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	2 cut(s)	62, 175
StyI	CCWWGG	2 cut(s)	434, 504
TaaI	ACNGT	1 cut(s)	779
TaiI	ACGT	1 cut(s)	729
TaqI	TCGA	3 cut(s)	127, 592, 675
TasI	AATT	5 cut(s)	194, 289, 621, 803, 988
TauI	GCSGC	2 cut(s)	609, 657
TfiI	GAWTC	2 cut(s)	200, 316
Tru1I	TTAA	3 cut(s)	165, 711, 723
Tru9I	TTAA	3 cut(s)	165, 711, 723
TscAI	CASTG	5 cut(s)	83, 487, 538, 603, 796
TseFI	GTSAC	2 cut(s)	454, 854
TseI	GCWGC	1 cut(s)	377
Tsp45I	GTSAC	2 cut(s)	454, 854
TspDTI	ATGAA	7 cut(s)	158, 199, 386, 400, 438, 461, 779
TspRI	CASTG	5 cut(s)	83, 487, 538, 603, 796
VpaK11BI	GGWCC	1 cut(s)	225
XapI	RAATTY	2 cut(s)	194, 803
XceI	RCATGY	2 cut(s)	377, 942
XmaJI	CCTAGG	1 cut(s)	434
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.