Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000397.1

Orthogroup ID

OG0008007

Physical Location & Seq

Genomic Coordinates Reverse (-)

194878 .. 195441

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000397.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ctgttggtggtagctaatgctggagactgtcgagcagtgctttgccgccgtggaaaagcaattgcgatgtcaagcgatcacaaacctatatgcagcaaagagatcaaacgcgtcgaggcatgtggaggatcagtgtatgatggctaccttaatgggcagcttaatgtcactcgcgctttgggagactggcatatggaaggaatgaagagcagggatggtgggccactcagtgcagagccagaggttaagactgtaaaactaacggaggaagacgagttccttatcattggctgtgatgggatctgggatgtgtttaggagtcaaaatgcagtggattttgctcgtcgcaggcttcaggagcacaatgacccagccacatgtagcaaggatttagttgatgaggctttgaagaggaagagtagcgacaatctggctgttgtggtagtttgcttccaacacgagcctccacccaatttgattgcccctcgctcaagagtgcagaggagcttctctgctgaaggtttgagggagttgcaaagcttcttggatgacttgaaaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002697 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0031347 GO:0032101 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0050688 GO:0050789 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

187

Amino Acids

20.71

Weight (kDa)

6.13

Isoelectric Point (pI)

57.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25620 AT2G25620
fragaria_vesca	FvH4_2g29850 FvH4_2g29850 FvH4_2g29850
malus_domestica	MD08G1140800.v1.1 MD15G1117700.v1.1
prunus_persica	Prupe.1G471100_v2.0.a1 Prupe.1G471100_v2.0.a1
pyrus_communis	pycom08g11880 pycom15g10610
rosa_chinensis	RchiOBHm_Chr6g0298921
rosa_laevigata	RLG00000011473
rosa_multiflora	Rmu_co8054612.1_g000001 Rmu_ssc0000397.1_g000049 Rmu_ssc0000397.1_g000050
rosa_roxburghii	Rroxscaffold_7G00169210
rosa_rugosa	Rorug06G0283600 Rorug06G0283700
rosa_samantha	Rh6AG395500 Rh6BG403600 Rh6CG409300 Rh6DG396300
rosa_wichuraiana	Rw6G034610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	111, 174
AciI	CCGC	1 cut(s)	46
AclWI	GGATC	2 cut(s)	136, 308
AcuI	CTGAAG	2 cut(s)	338, 537
AdeI	CACNNNGTG	1 cut(s)	230
AflIII	ACRYGT	2 cut(s)	109, 377
AgsI	TTSAA	2 cut(s)	409, 556
AloI	GAACNNNNNNTCC	2 cut(s)	260, 292
AluBI	AGCT	4 cut(s)	14, 160, 507, 540
AluI	AGCT	4 cut(s)	14, 160, 507, 540
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	2 cut(s)	18, 177
AlwI	GGATC	2 cut(s)	136, 308
AoxI	GGCC	1 cut(s)	221
ApeKI	GCWGC	2 cut(s)	93, 157
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	221
BauI	CACGAG	1 cut(s)	458
BbsI	GAAGAC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	2 cut(s)	105, 169
BccI	CCATC	3 cut(s)	134, 209, 290
BceAI	ACGGC	1 cut(s)	33
BcoDI	GTCTC	2 cut(s)	18, 177
BisI	GCNGC	3 cut(s)	46, 94, 158
BlsI	GCNGC	3 cut(s)	47, 95, 159
BmgT120I	GGNCC	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	475
BsaJI	CCNNGG	1 cut(s)	49
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bse1I	ACTGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	3 cut(s)	220, 313, 553
BseMII	CTCAG	1 cut(s)	241
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	517
BseXI	GCAGC	2 cut(s)	105, 169
BseYI	CCCAGC	1 cut(s)	370
BsgI	GTGCAG	2 cut(s)	252, 518
Bsh1236I	CGCG	2 cut(s)	111, 174
BshFI	GGCC	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	363
BsmAI	GTCTC	2 cut(s)	18, 177
BsnI	GGCC	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	4 cut(s)	76, 102, 128, 300
BspACI	CCGC	1 cut(s)	46
BspANI	GGCC	1 cut(s)	223
BspCNI	CTCAG	1 cut(s)	240
BspFNI	CGCG	2 cut(s)	111, 174
BspPI	GGATC	2 cut(s)	136, 308
BspQI	GCTCTTC	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	4 cut(s)	76, 102, 128, 300
BssSI	CACGAG	1 cut(s)	458
Bst2BI	CACGAG	1 cut(s)	458
Bst4CI	ACNGT	2 cut(s)	29, 253
Bst6I	CTCTTC	3 cut(s)	200, 404, 410
BstC8I	GCNNGC	1 cut(s)	350
BstDEI	CTNAG	1 cut(s)	227
BstDSI	CCRYGG	1 cut(s)	49
BstF5I	GGATG	3 cut(s)	220, 313, 553
BstFNI	CGCG	2 cut(s)	111, 174
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	4 cut(s)	79, 105, 131, 303
BstMAI	GTCTC	2 cut(s)	18, 177
BstMBI	GATC	4 cut(s)	76, 102, 128, 300
BstMWI	GCNNNNNNNGC	1 cut(s)	358
BstNSI	RCATGY	2 cut(s)	123, 381
BstUI	CGCG	2 cut(s)	111, 174
BstV1I	GCAGC	2 cut(s)	105, 169
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	223
BtgI	CCRYGG	1 cut(s)	49
BtgZI	GCGATG	1 cut(s)	80
BtsCI	GGATG	3 cut(s)	220, 313, 553
BtsI	GCAGTG	2 cut(s)	42, 336
BtsIMutI	CAGTG	4 cut(s)	42, 138, 235, 336
Cac8I	GCNNGC	1 cut(s)	350
CfoI	GCGC	1 cut(s)	176
Cfr13I	GGNCC	1 cut(s)	221
CseI	GACGC	1 cut(s)	100
CspCI	CAANNNNNGTGG	2 cut(s)	456, 491
CviAII	CATG	2 cut(s)	120, 378
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	4 cut(s)	78, 104, 130, 302
DpnII	GATC	4 cut(s)	76, 102, 128, 300
DraIII	CACNNNGTG	1 cut(s)	230
Eam1104I	CTCTTC	3 cut(s)	200, 404, 410
EarI	CTCTTC	3 cut(s)	200, 404, 410
Eco57I	CTGAAG	2 cut(s)	338, 537
FaeI	CATG	2 cut(s)	123, 381
FaiI	YATR	7 cut(s)	89, 91, 121, 138, 192, 194, 379
FatI	CATG	2 cut(s)	119, 377
FauNDI	CATATG	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	46, 94, 158
FokI	GGATG	3 cut(s)	227, 320, 560
Fsp4HI	GCNGC	3 cut(s)	46, 94, 158
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	3 cut(s)	46, 94, 158
GsaI	CCCAGC	1 cut(s)	374
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	223
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	2 cut(s)	123, 381
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HindIII	AAGCTT	1 cut(s)	538
HinfI	GANTC	1 cut(s)	319
Hpy188III	TCNNGA	2 cut(s)	356, 492
Hpy99I	CGWCG	2 cut(s)	116, 348
HpyAV	CCTTC	2 cut(s)	191, 512
HpyCH4III	ACNGT	2 cut(s)	29, 253
HpyCH4V	TGCA	5 cut(s)	93, 233, 329, 499, 535
HpyF10VI	GCNNNNNNNGC	1 cut(s)	358
HpyF3I	CTNAG	1 cut(s)	227
Hsp92II	CATG	2 cut(s)	123, 381
HspAI	GCGC	1 cut(s)	174
Kzo9I	GATC	4 cut(s)	76, 102, 128, 300
LguI	GCTCTTC	1 cut(s)	200
LmnI	GCTCC	2 cut(s)	358, 504
LpnPI	CCDG	9 cut(s)	6, 172, 196, 252, 289, 334, 341, 384, 416
Lsp1109I	GCAGC	2 cut(s)	105, 169
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	4 cut(s)	78, 104, 130, 302
MboI	GATC	4 cut(s)	76, 102, 128, 300
MboII	GAAGA	4 cut(s)	217, 281, 421, 427
MfeI	CAATTG	1 cut(s)	60
MflI	RGATCY	1 cut(s)	300
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	2 cut(s)	60, 472
MluI	ACGCGT	1 cut(s)	109
MlyI	GAGTC	1 cut(s)	328
MmeI	TCCRAC	1 cut(s)	478
MseI	TTAA	3 cut(s)	150, 162, 246
MunI	CAATTG	1 cut(s)	60
MvnI	CGCG	2 cut(s)	111, 174
MwoI	GCNNNNNNNGC	1 cut(s)	358
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	4 cut(s)	76, 102, 128, 300
NlaIII	CATG	2 cut(s)	123, 381
NmuCI	GTSAC	1 cut(s)	166
NspI	RCATGY	2 cut(s)	123, 381
PciI	ACATGT	1 cut(s)	377
PciSI	GCTCTTC	1 cut(s)	200
PkrI	GCNGC	3 cut(s)	47, 95, 159
PleI	GAGTC	1 cut(s)	327
PpsI	GAGTC	1 cut(s)	327
PscI	ACATGT	1 cut(s)	377
PspFI	CCCAGC	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	300
SapI	GCTCTTC	1 cut(s)	200
SaqAI	TTAA	3 cut(s)	150, 162, 246
SatI	GCNGC	3 cut(s)	46, 94, 158
Sau3AI	GATC	4 cut(s)	76, 102, 128, 300
Sau96I	GGNCC	1 cut(s)	221
SchI	GAGTC	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	8 cut(s)	16, 88, 150, 162, 246, 509, 523, 542
SmlI	CTYRAG	1 cut(s)	490
SmoI	CTYRAG	1 cut(s)	490
Sse9I	AATT	2 cut(s)	60, 472
SsiI	CCGC	1 cut(s)	46
TaaI	ACNGT	2 cut(s)	29, 253
TaqI	TCGA	2 cut(s)	31, 114
TasI	AATT	2 cut(s)	60, 472
TauI	GCSGC	1 cut(s)	48
Tru1I	TTAA	3 cut(s)	150, 162, 246
Tru9I	TTAA	3 cut(s)	150, 162, 246
TscAI	CASTG	4 cut(s)	42, 138, 235, 336
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	2 cut(s)	93, 157
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	218
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	4 cut(s)	42, 138, 235, 336
XceI	RCATGY	2 cut(s)	123, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.