Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008007

Physical Location & Seq

Genomic Coordinates Forward (+)

43186771 .. 43187394

Gene Structure 624 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0283600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGAAGGTGAGGAGAAAGTAGTCACAACACAAAATGGTAATGATCAAGCAAGCAATAAAGAAGAAGATGCAGCATCAAGACTATTTCCTTGTCTCTTCTGTTCAAGGAAGTTCTACAGCTCTCAAGCCTTGGGAGGCCACCAAAACGCTCACAAAAAGGAAAGAACTGCTGCAAGAAAAGCCAAACGTGCCTCTGATCACTATGCATCAGTCACTTTTCCTTCTCATATTTCACCACCCCCAATGGTTTTTGCTCCAAATCATCACTTGGGCCTCTTGCACCCTTCAATGTTCATGACTGCTCATGCTTCCAACCTCAGATACTACCCCAATCACCAATATTCGGACCGTTTCGGGTCAAATGGTGCGCCCAAGTTTGAGAATTTAGTGTACTATGGTGGGAATACCTGTTCCAGCTATGTTAACAATGGTTACAATAGTAACAGTGAGGAAGATGAGAAGAGCTTCTTAAATTGGCAGAGGAGCCCAAGATGCTATGGTTTCAGCGGAGAGTCTTCTCAACAACATTCATCAATGATAACTAACAATCACAATAGTCTTGGGATTAATAGTGATCATAAGGGTCATGAAGAGCAAAAGCTTGACCTTTCTCTCCGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002697 GO:0002831 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0031347 GO:0032101 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0050688 GO:0050789 GO:0065007 GO:0080134

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

207

Amino Acids

23.28

Weight (kDa)

7.78

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008007)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25620 AT2G25620
fragaria_vesca	FvH4_2g29850 FvH4_2g29850 FvH4_2g29850
malus_domestica	MD08G1140800.v1.1 MD15G1117700.v1.1
prunus_persica	Prupe.1G471100_v2.0.a1 Prupe.1G471100_v2.0.a1
pyrus_communis	pycom08g11880 pycom15g10610
rosa_chinensis	RchiOBHm_Chr6g0298921
rosa_laevigata	RLG00000011473
rosa_multiflora	Rmu_co8054612.1_g000001 Rmu_ssc0000397.1_g000049 Rmu_ssc0000397.1_g000050
rosa_roxburghii	Rroxscaffold_7G00169210
rosa_rugosa	Rorug06G0283600 Rorug06G0283700
rosa_samantha	Rh6AG395500 Rh6BG403600 Rh6CG409300 Rh6DG396300
rosa_wichuraiana	Rw6G034610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	507
AcsI	RAATTY	1 cut(s)	382
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	2 cut(s)	105, 288
AloI	GAACNNNNNNTCC	2 cut(s)	394, 426
AluBI	AGCT	4 cut(s)	120, 417, 465, 601
AluI	AGCT	4 cut(s)	120, 417, 465, 601
Alw26I	GTCTC	1 cut(s)	98
AoxI	GGCC	2 cut(s)	136, 271
ApeKI	GCWGC	2 cut(s)	71, 170
ApoI	RAATTY	1 cut(s)	382
AseI	ATTAAT	1 cut(s)	567
Asp700I	GAANNNNTTC	1 cut(s)	464
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	2 cut(s)	271, 346
AsuHPI	GGTGA	3 cut(s)	20, 225, 326
AvaII	GGWCC	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	507
BbvI	GCAGC	2 cut(s)	83, 157
BclI	TGATCA	3 cut(s)	43, 196, 574
BcoDI	GTCTC	1 cut(s)	98
BfmI	CTRYAG	1 cut(s)	115
BisI	GCNGC	2 cut(s)	72, 171
BlsI	GCNGC	2 cut(s)	73, 172
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	2 cut(s)	271, 346
BmiI	GGNNCC	1 cut(s)	485
BmsI	GCATC	4 cut(s)	58, 83, 215, 482
BpiI	GAAGAC	1 cut(s)	507
BpuEI	CTTGAG	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
BseDI	CCNNGG	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	331
BseRI	GAGGAG	2 cut(s)	26, 496
BseXI	GCAGC	2 cut(s)	83, 157
BshFI	GGCC	2 cut(s)	138, 273
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	138, 273
Bsp1286I	GDGCHC	1 cut(s)	488
Bsp143I	GATC	3 cut(s)	43, 196, 574
BspACI	CCGC	1 cut(s)	507
BspANI	GGCC	2 cut(s)	138, 273
BspCNI	CTCAG	1 cut(s)	330
BspHI	TCATGA	2 cut(s)	294, 586
BspLI	GGNNCC	1 cut(s)	485
BspQI	GCTCTTC	2 cut(s)	455, 585
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	3 cut(s)	43, 196, 574
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	2 cut(s)	350, 446
Bst6I	CTCTTC	3 cut(s)	101, 455, 585
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	1 cut(s)	317
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	3 cut(s)	46, 199, 577
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	3 cut(s)	43, 196, 574
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 188, 492
BstSFI	CTRYAG	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	83, 157
BstV2I	GAAGAC	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	138, 273
BtsIMutI	CAGTG	1 cut(s)	451
Cac8I	GCNNGC	1 cut(s)	52
CciI	TCATGA	2 cut(s)	294, 586
CfoI	GCGC	1 cut(s)	370
Cfr13I	GGNCC	2 cut(s)	271, 346
CpoI	CGGWCCG	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	391
CspI	CGGWCCG	1 cut(s)	346
CviAII	CATG	3 cut(s)	295, 305, 587
CviJI	RGCY	9 cut(s)	120, 128, 138, 182, 273, 417, 465, 486, 601
CviKI_1	RGCY	9 cut(s)	120, 128, 138, 182, 273, 417, 465, 486, 601
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	3 cut(s)	45, 198, 576
DpnII	GATC	3 cut(s)	43, 196, 574
Eam1104I	CTCTTC	3 cut(s)	101, 455, 585
EarI	CTCTTC	3 cut(s)	101, 455, 585
Eco130I	CCWWGG	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	488
Eco47I	GGWCC	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	129
EcoT22I	ATGCAT	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	488
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	3 cut(s)	298, 308, 590
FaiI	YATR	9 cut(s)	204, 228, 296, 306, 396, 420, 498, 579, 588
FalI	AAGNNNNNCTT	2 cut(s)	452, 484
FatI	CATG	3 cut(s)	294, 304, 586
FbaI	TGATCA	3 cut(s)	43, 196, 574
Fnu4HI	GCNGC	2 cut(s)	72, 171
FriOI	GRGCYC	1 cut(s)	488
Fsp4HI	GCNGC	2 cut(s)	72, 171
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	2 cut(s)	72, 171
HaeIII	GGCC	2 cut(s)	138, 273
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	3 cut(s)	298, 308, 590
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	1 cut(s)	512
HpaI	GTTAAC	1 cut(s)	424
HphI	GGTGA	3 cut(s)	20, 225, 326
Hpy166II	GTNNAC	2 cut(s)	391, 424
Hpy188I	TCNGA	3 cut(s)	196, 320, 346
Hpy188III	TCNNGA	3 cut(s)	78, 295, 587
Hpy8I	GTNNAC	2 cut(s)	391, 424
HpyAV	CCTTC	2 cut(s)	231, 294
HpyCH4III	ACNGT	2 cut(s)	350, 446
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	4 cut(s)	71, 173, 206, 280
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 188, 492
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	3 cut(s)	298, 308, 590
HspAI	GCGC	1 cut(s)	368
Ksp22I	TGATCA	3 cut(s)	43, 196, 574
KspAI	GTTAAC	1 cut(s)	424
Kzo9I	GATC	3 cut(s)	43, 196, 574
LguI	GCTCTTC	2 cut(s)	455, 585
LmnI	GCTCC	2 cut(s)	259, 483
LpnPI	CCDG	2 cut(s)	421, 427
Lsp1109I	GCAGC	2 cut(s)	83, 157
LweI	GCATC	4 cut(s)	58, 83, 215, 482
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	4 cut(s)	22, 211, 431, 440
MalI	GATC	3 cut(s)	45, 198, 576
MboI	GATC	3 cut(s)	43, 196, 574
MboII	GAAGA	7 cut(s)	74, 77, 88, 464, 472, 507, 602
MhlI	GDGCHC	1 cut(s)	488
MluCI	AATT	2 cut(s)	382, 472
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	1 cut(s)	336
MnlI	CCTC	7 cut(s)	4, 128, 202, 284, 326, 442, 474
Mph1103I	ATGCAT	1 cut(s)	208
MroXI	GAANNNNTTC	1 cut(s)	464
MseI	TTAA	3 cut(s)	423, 470, 567
MspA1I	CMGCKG	1 cut(s)	507
MwoI	GCNNNNNNNGC	3 cut(s)	179, 188, 492
NdeII	GATC	3 cut(s)	43, 196, 574
NlaIII	CATG	3 cut(s)	298, 308, 590
NlaIV	GGNNCC	1 cut(s)	485
NmuCI	GTSAC	2 cut(s)	22, 211
NsiI	ATGCAT	1 cut(s)	208
PagI	TCATGA	2 cut(s)	294, 586
PciSI	GCTCTTC	2 cut(s)	455, 585
PdmI	GAANNNNTTC	1 cut(s)	464
PkrI	GCNGC	2 cut(s)	73, 172
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PshBI	ATTAAT	1 cut(s)	567
PspN4I	GGNNCC	1 cut(s)	485
PspPI	GGNCC	2 cut(s)	271, 346
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
Rsr2I	CGGWCCG	1 cut(s)	346
RsrII	CGGWCCG	1 cut(s)	346
SapI	GCTCTTC	2 cut(s)	455, 585
SaqAI	TTAA	3 cut(s)	423, 470, 567
SatI	GCNGC	2 cut(s)	72, 171
Sau3AI	GATC	3 cut(s)	43, 196, 574
Sau96I	GGNCC	2 cut(s)	271, 346
SchI	GAGTC	1 cut(s)	521
SduI	GDGCHC	1 cut(s)	488
SetI	ASST	9 cut(s)	10, 122, 190, 318, 410, 419, 467, 603, 609
SfaNI	GCATC	4 cut(s)	58, 83, 215, 482
SfcI	CTRYAG	1 cut(s)	115
SinI	GGWCC	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
Sse9I	AATT	2 cut(s)	382, 472
SsiI	CCGC	1 cut(s)	507
SspI	AATATT	1 cut(s)	341
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	2 cut(s)	350, 446
TaiI	ACGT	1 cut(s)	190
TasI	AATT	2 cut(s)	382, 472
TatI	WGTACW	1 cut(s)	390
Tru1I	TTAA	3 cut(s)	423, 470, 567
Tru9I	TTAA	3 cut(s)	423, 470, 567
TscAI	CASTG	1 cut(s)	451
TseFI	GTSAC	2 cut(s)	22, 211
TseI	GCWGC	2 cut(s)	71, 170
Tsp45I	GTSAC	2 cut(s)	22, 211
TspDTI	ATGAA	3 cut(s)	283, 519, 603
TspGWI	ACGGA	1 cut(s)	605
TspRI	CASTG	1 cut(s)	451
VpaK11BI	GGWCC	1 cut(s)	346
VspI	ATTAAT	1 cut(s)	567
XapI	RAATTY	1 cut(s)	382
XmnI	GAANNNNTTC	1 cut(s)	464
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.